Wall clock time and date at job start Tue Mar 31 2020 14:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47051 * 2 1 4 4 C 1.50696 * 109.47192 * 240.00357 * 2 1 3 5 5 H 1.08002 * 120.00354 * 240.00274 * 4 2 1 6 6 C 1.37873 * 120.00257 * 59.99555 * 4 2 1 7 7 N 1.31524 * 120.00061 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00391 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46920 * 59.99740 * 8 6 4 10 10 H 1.48496 * 109.47240 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46862 * 300.00336 * 8 6 4 12 12 C 1.53001 * 109.47444 * 119.99855 * 2 1 3 13 13 N 1.46490 * 109.47285 * 300.00186 * 12 2 1 14 14 C 1.34773 * 120.00326 * 179.97438 * 13 12 2 15 15 O 1.21591 * 120.00000 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00462 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00376 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47473 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 16 20 20 C 1.38239 * 120.00487 * 100.00100 * 19 18 17 21 21 C 1.38220 * 120.01336 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.02394 * 0.03851 * 21 20 19 23 23 C 1.38197 * 120.01707 * 359.97438 * 22 21 20 24 24 C 1.38331 * 120.00622 * 279.72913 * 19 18 17 25 25 Cl 1.73596 * 120.01445 * 359.97409 * 24 19 18 26 26 H 1.09006 * 109.46904 * 299.99313 * 1 2 3 27 27 H 1.08997 * 109.47710 * 60.00043 * 1 2 3 28 28 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47449 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47235 * 300.00613 * 3 2 1 31 31 H 1.09000 * 109.47268 * 60.00163 * 3 2 1 32 32 H 0.96993 * 120.00150 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47218 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.46609 * 60.00486 * 12 2 1 35 35 H 0.97004 * 120.00364 * 359.97438 * 13 12 2 36 36 H 0.97004 * 120.00228 * 0.02562 * 16 14 13 37 37 H 1.09002 * 109.47129 * 59.99747 * 17 16 14 38 38 H 1.08998 * 109.46845 * 300.00553 * 17 16 14 39 39 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 40 40 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 41 41 H 1.08002 * 119.99356 * 359.97438 * 20 19 18 42 42 H 1.08000 * 119.98661 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.99473 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00665 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8258 -0.4204 -5.2204 11 1 3.8062 -1.1207 -4.0082 12 6 2.0400 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6694 15 8 2.5753 -1.4805 3.7810 16 7 1.4282 0.1442 4.7699 17 6 1.7821 -0.3562 6.1005 18 6 1.1490 0.5392 7.1674 19 6 1.5126 0.0239 8.5361 20 6 2.5332 0.6222 9.2513 21 6 2.8665 0.1501 10.5069 22 6 2.1800 -0.9211 11.0479 23 6 1.1597 -1.5202 10.3338 24 6 0.8215 -1.0441 9.0793 25 17 -0.4654 -1.7910 8.1850 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 0.7087 1.1615 -3.4843 33 1 3.1301 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 0.8707 0.9331 4.6810 37 1 2.8661 -0.3480 6.2153 38 1 1.4124 -1.3751 6.2156 39 1 0.0651 0.5305 7.0524 40 1 1.5184 1.5582 7.0523 41 1 3.0702 1.4586 8.8288 42 1 3.6637 0.6181 11.0654 43 1 2.4411 -1.2899 12.0288 44 1 0.6233 -2.3567 10.7567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458059682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:28 Heat of formation + Delta-G solvation = -27.714043 kcal Electronic energy + Delta-G solvation = -24322.672457 eV Core-core repulsion = 20686.233595 eV Total energy + Delta-G solvation = -3636.438862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97473 -39.40638 -36.71667 -36.57864 -35.31424 -33.26985 -32.68678 -31.11487 -30.75055 -28.54225 -25.68857 -25.56227 -24.90017 -23.44417 -23.10202 -21.45297 -20.54943 -18.73891 -18.11562 -17.28952 -16.29214 -16.08758 -15.76050 -15.53897 -15.19084 -14.69391 -14.28939 -14.21860 -13.93370 -13.75916 -13.60947 -13.26814 -12.82793 -12.77587 -12.22787 -12.14039 -11.98083 -11.89039 -11.74855 -11.43145 -11.25047 -11.15897 -11.01281 -10.81158 -10.70212 -10.34466 -10.18157 -9.74219 -9.59221 -9.31265 -9.26089 -9.02142 -8.92213 -8.76379 -8.37885 -8.13755 -5.99111 -4.08885 0.75767 0.85801 1.85195 3.07285 3.28039 3.32444 3.36387 3.40843 3.70614 4.30935 4.35230 4.42276 4.56939 4.76918 4.81608 4.88001 4.96778 5.08123 5.17016 5.27482 5.39082 5.54694 5.70476 5.82211 5.91019 6.00358 6.06883 6.25804 6.39311 6.41022 6.54475 6.67744 6.84275 6.86421 6.94969 7.07011 7.14791 7.34772 7.46015 7.59433 7.72841 8.04642 8.15918 8.41795 8.53868 8.90837 9.10372 9.56580 11.02280 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.030354 B = 0.002092 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.221862 B =13383.442049 C =13601.126342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.599 6.599 16 N -0.754 5.754 17 C 0.147 3.853 18 C -0.097 4.097 19 C -0.069 4.069 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.032 4.032 25 Cl -0.061 7.061 26 H 0.006 0.994 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.006 0.994 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.393 0.607 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 2.474 26.621 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.478 6.478 16 N -0.411 5.411 17 C 0.023 3.977 18 C -0.135 4.135 19 C -0.070 4.070 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.059 4.059 25 Cl -0.032 7.032 26 H 0.025 0.975 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.228 0.772 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.924 1.580 26.447 26.511 hybrid contribution -0.312 0.184 -0.921 0.989 sum -1.236 1.764 25.526 25.617 Atomic orbital electron populations 1.21817 0.97788 0.99150 0.99971 1.18362 0.92795 0.92779 0.90570 1.21817 0.98562 0.98366 0.99973 1.20950 1.31412 1.12062 0.89876 0.92474 1.24884 0.94907 0.94950 0.98832 1.69798 1.36721 1.22760 1.23268 0.86628 0.79228 0.79794 0.82169 1.20294 1.21374 1.20288 1.21570 0.97846 0.95416 0.82414 1.45492 1.55661 1.33019 1.04585 1.16053 0.80557 0.82994 0.80661 1.90886 1.43153 1.27675 1.86106 1.45070 1.57751 1.33418 1.04867 1.21003 0.99627 0.97482 0.79637 1.20855 1.02446 0.99975 0.90203 1.19580 0.96031 0.95048 0.96368 1.21095 0.96266 1.00091 0.94549 1.21264 0.99693 0.96669 0.95613 1.21137 0.95579 0.96201 1.00084 1.21080 0.98228 1.00488 0.93029 1.20906 0.94029 0.96838 0.94122 1.98397 1.48706 1.81221 1.74916 0.97547 0.89673 0.95474 0.95471 0.89674 0.97547 0.93001 0.93002 0.93009 0.77229 0.77359 0.91779 0.91399 0.89555 0.89758 0.84891 0.85311 0.85143 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.50 -13.36 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.30 4.50 -4.05 -0.02 3.28 16 13 N -0.73 -13.47 4.96 -65.23 -0.32 -13.79 16 14 C 0.70 12.80 8.57 -86.92 -0.74 12.06 16 15 O -0.60 -13.52 16.34 5.29 0.09 -13.43 16 16 N -0.75 -10.06 5.56 -65.23 -0.36 -10.43 16 17 C 0.15 1.77 5.61 -4.04 -0.02 1.75 16 18 C -0.10 -0.83 4.92 -27.88 -0.14 -0.97 16 19 C -0.07 -0.60 5.14 -104.59 -0.54 -1.14 16 20 C -0.10 -0.75 9.67 -39.59 -0.38 -1.13 16 21 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 22 C -0.11 -0.73 10.05 -39.59 -0.40 -1.12 16 23 C -0.11 -0.85 9.83 -39.55 -0.39 -1.24 16 24 C -0.03 -0.30 6.31 -39.50 -0.25 -0.55 16 25 Cl -0.06 -0.62 26.65 -51.86 -1.38 -2.00 16 26 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 27 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 32 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 6.41 6.18 -40.82 -0.25 6.16 16 36 H 0.39 4.06 8.49 -40.82 -0.35 3.72 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.94 7.29 -51.93 -0.38 0.56 16 39 H 0.09 0.73 7.34 -51.93 -0.38 0.35 16 40 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 41 H 0.13 0.76 8.04 -52.49 -0.42 0.34 16 42 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -30.70 370.33 -10.49 -41.18 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.46 Total: 6.48 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.12 Total: -6.25 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.17 Total: -47.46 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.38 Total: -2.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.70 -10.49 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458059682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.470 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds