Wall clock time and date at job start Tue Mar 31 2020 14:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99931 * 2 1 4 4 C 1.50699 * 109.47350 * 269.99854 * 3 2 1 5 5 C 1.38260 * 119.99753 * 269.72183 * 4 3 2 6 6 C 1.38218 * 120.02649 * 179.76735 * 5 4 3 7 7 C 1.38235 * 120.01336 * 0.50913 * 6 5 4 8 8 C 1.38327 * 119.98731 * 359.75169 * 7 6 5 9 9 Cl 1.73601 * 120.01461 * 180.02562 * 8 7 6 10 10 C 1.38196 * 119.98982 * 90.00598 * 4 3 2 11 11 C 1.34773 * 120.00095 * 180.02562 * 2 1 3 12 12 O 1.21588 * 120.00151 * 179.72667 * 11 2 1 13 13 N 1.34784 * 119.99935 * 359.97438 * 11 2 1 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 2 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46870 * 299.99298 * 15 14 13 17 17 C 1.53000 * 109.47499 * 59.99732 * 15 14 13 18 18 C 1.50708 * 109.46949 * 179.97438 * 15 14 13 19 19 H 1.07997 * 119.99690 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00050 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99915 * 0.02562 * 20 18 15 22 22 Si 1.86794 * 120.00185 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.46940 * 60.00393 * 22 20 18 24 24 H 1.48496 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47121 * 300.00922 * 22 20 18 26 26 H 1.09000 * 109.47191 * 269.99858 * 1 2 3 27 27 H 1.09004 * 109.46976 * 30.00047 * 1 2 3 28 28 H 1.08998 * 109.47074 * 149.99450 * 1 2 3 29 29 H 1.09003 * 109.47023 * 30.00279 * 3 2 1 30 30 H 1.09002 * 109.46896 * 149.99872 * 3 2 1 31 31 H 1.07999 * 119.98327 * 0.02562 * 5 4 3 32 32 H 1.08002 * 119.98687 * 180.26213 * 6 5 4 33 33 H 1.07997 * 120.00260 * 179.76739 * 7 6 5 34 34 H 1.07995 * 120.00753 * 359.94738 * 10 4 3 35 35 H 0.97005 * 119.99846 * 359.72693 * 13 11 2 36 36 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 37 37 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 38 38 H 1.09007 * 109.46830 * 60.00773 * 16 15 14 39 39 H 1.09005 * 109.46980 * 180.02562 * 16 15 14 40 40 H 1.08994 * 109.47292 * 300.00516 * 16 15 14 41 41 H 1.08992 * 109.46855 * 59.99654 * 17 15 14 42 42 H 1.08995 * 109.47095 * 179.97438 * 17 15 14 43 43 H 1.08998 * 109.46768 * 299.99888 * 17 15 14 44 44 H 0.97000 * 120.00246 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.6037 1.3094 -2.0705 6 6 3.8324 1.7041 -3.3752 7 6 2.9115 2.5022 -4.0278 8 6 1.7583 2.9015 -3.3765 9 17 0.6010 3.9032 -4.1955 10 6 1.5274 2.5017 -2.0720 11 6 2.1389 -1.1672 -0.0005 12 8 3.3548 -1.1672 -0.0055 13 7 1.4650 -2.3344 -0.0005 14 6 2.1975 -3.6031 -0.0071 15 6 1.2032 -4.7660 -0.0063 16 6 0.3289 -4.6885 1.2469 17 6 0.3184 -4.6815 -1.2516 18 6 1.9567 -6.0712 -0.0137 19 1 3.0367 -6.0711 -0.0189 20 6 1.2673 -7.2652 -0.0138 21 7 -0.0478 -7.2652 -0.0080 22 14 2.2012 -8.8829 -0.0237 23 1 3.0612 -8.9654 1.1842 24 1 1.2362 -10.0116 -0.0228 25 1 3.0488 -8.9577 -1.2407 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 1.6084 2.0283 0.5139 30 1 3.1499 1.1383 0.5139 31 1 4.3254 0.6892 -1.5597 32 1 4.7328 1.3922 -3.8836 33 1 3.0922 2.8136 -5.0460 34 1 0.6270 2.8128 -1.5632 35 1 0.4950 -2.3344 0.0039 36 1 2.8201 -3.6586 -0.9000 37 1 2.8282 -3.6632 0.8798 38 1 -0.2162 -3.7445 1.2518 39 1 -0.3792 -5.5172 1.2477 40 1 0.9592 -4.7487 2.1340 41 1 0.9413 -4.7366 -2.1443 42 1 -0.3896 -5.5102 -1.2512 43 1 -0.2266 -3.7375 -1.2466 44 1 -0.5329 -8.1052 -0.0084 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459228541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:34 Heat of formation + Delta-G solvation = -12.315286 kcal Electronic energy + Delta-G solvation = -25262.405566 eV Core-core repulsion = 21626.634444 eV Total energy + Delta-G solvation = -3635.771122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19806 -39.17458 -36.81803 -36.46780 -35.30641 -33.41638 -31.90021 -30.90999 -30.58804 -27.47764 -26.25096 -25.72464 -25.38632 -24.24825 -22.83346 -21.76288 -19.69831 -18.85419 -17.85315 -17.21865 -16.13162 -15.86237 -15.82390 -15.56604 -15.21674 -14.71609 -14.08645 -13.98109 -13.73698 -13.58544 -13.48775 -13.06353 -12.85944 -12.59714 -12.55506 -12.22972 -12.05017 -11.71210 -11.62853 -11.39733 -11.38245 -11.18662 -11.08129 -10.84311 -10.72454 -10.37965 -10.20359 -9.79852 -9.62759 -9.32461 -9.13603 -8.86140 -8.79523 -8.71909 -8.40222 -8.16363 -6.01725 -4.11726 0.97137 1.04903 1.90969 2.92003 3.30427 3.34673 3.38425 3.53449 3.60330 4.33186 4.45182 4.52897 4.60823 4.85819 5.02588 5.05629 5.13971 5.23372 5.25019 5.39896 5.54392 5.58750 5.64286 5.73771 5.98549 6.17351 6.20990 6.36796 6.37026 6.50430 6.53452 6.63328 6.79378 6.82393 6.91249 7.03369 7.09713 7.21802 7.38657 7.56101 7.69918 8.01378 8.12427 8.36610 8.41864 8.87695 9.00649 9.53980 10.99725 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.020341 B = 0.002585 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.201798 B =10828.218675 C =10851.519836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.635 5.635 3 C 0.175 3.825 4 C -0.092 4.092 5 C -0.085 4.085 6 C -0.110 4.110 7 C -0.110 4.110 8 C -0.040 4.040 9 Cl -0.078 7.078 10 C -0.099 4.099 11 C 0.701 3.299 12 O -0.596 6.596 13 N -0.732 5.732 14 C 0.150 3.850 15 C 0.057 3.943 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.394 0.606 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.005 0.995 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 20.915 -3.830 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.373 5.373 3 C 0.051 3.949 4 C -0.094 4.094 5 C -0.104 4.104 6 C -0.129 4.129 7 C -0.129 4.129 8 C -0.066 4.066 9 Cl -0.049 7.049 10 C -0.119 4.119 11 C 0.402 3.598 12 O -0.475 6.475 13 N -0.387 5.387 14 C 0.027 3.973 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.231 0.769 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.023 0.977 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.394 20.805 -3.880 21.167 hybrid contribution -0.246 -0.803 -0.246 0.875 sum 0.147 20.001 -4.126 20.423 Atomic orbital electron populations 1.21718 0.80034 1.02992 1.01671 1.47026 1.06082 1.04617 1.79575 1.20134 0.98731 0.84478 0.91566 1.20337 0.94289 0.96976 0.97773 1.21423 0.97201 0.97260 0.94512 1.21180 0.99317 0.97436 0.94929 1.21061 0.92947 0.98609 1.00320 1.20870 0.92796 0.99034 0.93950 1.98364 1.59261 1.68205 1.79052 1.20921 0.99640 0.98411 0.92894 1.16002 0.85424 0.80445 0.77945 1.90846 1.11594 1.86300 1.58740 1.45664 1.10146 1.05090 1.77789 1.21586 0.94999 0.80454 1.00288 1.18353 0.91933 0.91360 0.92756 1.21822 1.00257 0.99040 0.97623 1.21815 1.00238 0.98983 0.97645 1.20948 0.92860 0.89730 1.50897 0.92464 1.24874 0.94873 0.98943 0.94795 1.69793 1.05776 1.26386 1.50565 0.86630 0.79576 0.82947 0.78686 1.20275 1.21347 1.20282 0.92544 0.91229 0.91259 0.89781 0.88560 0.84395 0.85057 0.85186 0.85220 0.76940 0.93020 0.92940 0.97653 0.89625 0.95428 0.95472 0.89624 0.97728 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.20 59.85 0.61 1.41 16 2 N -0.64 -8.34 2.86 -188.74 -0.54 -8.88 16 3 C 0.17 1.92 5.53 -5.20 -0.03 1.89 16 4 C -0.09 -1.03 5.46 -104.63 -0.57 -1.60 16 5 C -0.09 -1.03 9.70 -39.58 -0.38 -1.41 16 6 C -0.11 -1.16 10.05 -39.59 -0.40 -1.56 16 7 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 8 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 9 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 10 C -0.10 -1.01 9.49 -39.55 -0.38 -1.38 16 11 C 0.70 12.28 8.28 -86.91 -0.72 11.56 16 12 O -0.60 -12.20 15.46 5.29 0.08 -12.12 16 13 N -0.73 -13.24 4.82 -65.23 -0.31 -13.55 16 14 C 0.15 3.21 4.50 -4.04 -0.02 3.19 16 15 C 0.06 1.31 0.50 -155.65 -0.08 1.23 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 18 C -0.51 -13.23 8.01 -34.44 -0.28 -13.50 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 22 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 28 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 29 H 0.08 0.67 8.02 -51.93 -0.42 0.26 16 30 H 0.10 1.17 7.37 -51.93 -0.38 0.78 16 31 H 0.14 1.83 7.59 -52.49 -0.40 1.43 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.39 6.51 3.90 -40.82 -0.16 6.35 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 39 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 44 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -28.96 369.58 -9.95 -38.91 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.37 Total: 5.61 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.37 Total: -5.92 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.34 Total: -45.47 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.96 -9.95 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459228541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.591 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds