Wall clock time and date at job start Tue Mar 31 2020 14:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46928 * 2 1 4 4 H 1.09001 * 109.46770 * 304.24939 * 3 2 1 5 5 C 1.50698 * 109.47084 * 184.24632 * 3 2 1 6 6 H 1.07998 * 120.00190 * 239.99845 * 5 3 2 7 7 C 1.37883 * 119.99935 * 60.00053 * 5 3 2 8 8 N 1.31516 * 119.99818 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99960 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47203 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47080 * 120.00128 * 9 7 5 12 12 H 1.48501 * 109.47149 * 240.00188 * 9 7 5 13 13 N 1.46901 * 109.46829 * 64.24648 * 3 2 1 14 14 C 1.46900 * 110.99802 * 205.89132 * 13 3 2 15 15 C 1.50700 * 109.47000 * 174.71344 * 14 13 3 16 16 O 1.21283 * 120.00138 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00361 * 180.27647 * 17 15 14 19 19 H 1.09004 * 109.46957 * 324.71667 * 18 17 15 20 20 C 1.52995 * 109.47558 * 84.71623 * 18 17 15 21 21 C 1.50699 * 109.47639 * 204.72233 * 18 17 15 22 22 C 1.38244 * 119.98374 * 319.72814 * 21 18 17 23 23 C 1.38213 * 120.01353 * 179.72528 * 22 21 18 24 24 C 1.38359 * 119.98380 * 0.54354 * 23 22 21 25 25 Cl 1.73602 * 120.01165 * 179.70651 * 24 23 22 26 26 C 1.38350 * 119.97566 * 359.72574 * 24 23 22 27 27 C 1.38215 * 119.98417 * 359.97438 * 26 24 23 28 28 H 1.08993 * 109.47068 * 294.92728 * 1 2 3 29 29 H 1.08991 * 109.47318 * 54.93169 * 1 2 3 30 30 H 1.09003 * 109.46438 * 174.93103 * 1 2 3 31 31 H 1.09005 * 109.47122 * 240.00234 * 2 1 3 32 32 H 1.09002 * 109.47379 * 120.00073 * 2 1 3 33 33 H 0.97006 * 119.99396 * 179.97438 * 8 7 5 34 34 H 1.00907 * 110.99890 * 81.94099 * 13 3 2 35 35 H 1.09000 * 109.46806 * 54.71091 * 14 13 3 36 36 H 1.09005 * 109.47186 * 294.71357 * 14 13 3 37 37 H 0.97001 * 119.99759 * 359.97438 * 17 15 14 38 38 H 1.09005 * 109.47106 * 60.00572 * 20 18 17 39 39 H 1.08998 * 109.47769 * 180.02562 * 20 18 17 40 40 H 1.08998 * 109.47496 * 300.00635 * 20 18 17 41 41 H 1.08001 * 119.99206 * 359.97438 * 22 21 18 42 42 H 1.08001 * 120.01243 * 180.26561 * 23 22 21 43 43 H 1.08000 * 120.00869 * 179.97438 * 26 24 23 44 44 H 1.08003 * 119.99290 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6158 1.9779 -0.8495 5 6 3.5433 1.4440 -0.1052 6 1 4.1389 1.8920 0.6764 7 6 4.1583 0.8732 -1.1994 8 7 3.4330 0.3272 -2.1509 9 14 6.0217 0.8755 -1.3301 10 1 6.6008 1.5457 -0.1382 11 1 6.5148 -0.5235 -1.3991 12 1 6.4310 1.6057 -2.5568 13 7 1.6358 2.1048 1.2474 14 6 1.5386 3.5590 1.0639 15 6 0.9985 4.1891 2.3218 16 8 0.7214 3.4950 3.2770 17 7 0.8225 5.5238 2.3850 18 6 0.3033 6.1370 3.6099 19 1 -0.4249 5.4691 4.0702 20 6 1.4561 6.3843 4.5849 21 6 -0.3600 7.4477 3.2735 22 6 0.2109 8.2911 2.3387 23 6 -0.3998 9.4907 2.0255 24 6 -1.5770 9.8526 2.6560 25 17 -2.3408 11.3627 2.2687 26 6 -2.1451 9.0107 3.5955 27 6 -1.5366 7.8085 3.9033 28 1 -0.3633 0.4331 0.9319 29 1 -0.3633 0.5904 -0.8410 30 1 -0.3632 -1.0237 -0.0908 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8657 -0.0739 -2.9208 34 1 2.2688 1.8768 1.9994 35 1 0.8685 3.7762 0.2321 36 1 2.5272 3.9651 0.8496 37 1 1.0438 6.0789 1.6209 38 1 2.1842 7.0524 4.1247 39 1 1.0697 6.8402 5.4964 40 1 1.9358 5.4364 4.8283 41 1 1.1324 8.0106 1.8500 42 1 0.0440 10.1476 1.2920 43 1 -3.0637 9.2929 4.0883 44 1 -1.9801 7.1510 4.6364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517956413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:58 Heat of formation + Delta-G solvation = -29.858907 kcal Electronic energy + Delta-G solvation = -24429.301358 eV Core-core repulsion = 20792.769487 eV Total energy + Delta-G solvation = -3636.531870 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29455 -39.05858 -36.97752 -36.06164 -35.23082 -32.53314 -31.82742 -31.40681 -30.94714 -29.33229 -27.21371 -25.13737 -23.91001 -23.32015 -22.47876 -21.05431 -20.06737 -19.53251 -17.81939 -16.90878 -16.50857 -16.39395 -15.57840 -15.14332 -15.02348 -14.74157 -14.25420 -13.93455 -13.90347 -13.85357 -13.51391 -13.44576 -12.99631 -12.67751 -12.45392 -12.17397 -12.01139 -11.86186 -11.81090 -11.55901 -11.25758 -11.21725 -11.17544 -11.12058 -10.90701 -10.66283 -10.18875 -9.79254 -9.57114 -9.44862 -9.33858 -9.10144 -9.05462 -8.89898 -8.41841 -7.28747 -6.03575 -4.17256 0.70474 0.88736 1.75930 3.00799 3.12026 3.23015 3.32114 3.34691 3.37444 4.26409 4.35953 4.36822 4.48392 4.89093 4.94307 5.02271 5.14753 5.19878 5.26379 5.29307 5.49670 5.51420 5.52442 5.72838 5.80973 5.82631 5.93516 6.03187 6.12403 6.13369 6.37158 6.43151 6.54464 6.55912 6.74745 7.09675 7.21645 7.40272 7.53057 7.64914 7.75459 8.06262 8.09362 8.27831 8.52415 8.63691 8.95743 9.50813 10.96244 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.017145 B = 0.002292 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.759989 B =12215.734538 C =12564.481225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.671 5.671 14 C 0.050 3.950 15 C 0.515 3.485 16 O -0.525 6.525 17 N -0.737 5.737 18 C 0.183 3.817 19 H 0.098 0.902 20 C -0.158 4.158 21 C -0.081 4.081 22 C -0.101 4.101 23 C -0.106 4.106 24 C -0.037 4.037 25 Cl -0.073 7.073 26 C -0.107 4.107 27 C -0.096 4.096 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.024 0.976 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.337 0.663 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.963 19.764 9.499 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.302 5.302 14 C -0.083 4.083 15 C 0.303 3.697 16 O -0.399 6.399 17 N -0.392 5.392 18 C 0.078 3.922 19 H 0.116 0.884 20 C -0.216 4.216 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.064 4.064 25 Cl -0.044 7.044 26 C -0.126 4.126 27 C -0.114 4.114 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.232 0.768 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.895 19.146 9.874 23.706 hybrid contribution 2.060 0.756 -0.705 2.305 sum -7.836 19.903 9.169 23.272 Atomic orbital electron populations 1.21693 0.98926 0.98333 1.00471 1.21485 0.92178 0.98943 1.01763 1.19211 0.92767 0.91405 0.85827 0.94933 1.21904 0.92640 1.38297 1.05851 0.92764 1.24935 0.98016 0.94890 0.95634 1.69893 1.34839 1.37891 1.09530 0.86594 0.85993 0.77842 0.77879 1.19924 1.20908 1.21041 1.60633 1.56259 1.03386 1.09948 1.21662 1.00226 0.92728 0.93691 1.21241 0.76994 0.81030 0.90480 1.90657 1.49254 1.61639 1.38382 1.46241 1.68608 1.08066 1.16314 1.19711 0.95885 0.90272 0.86325 0.88448 1.22173 0.98020 1.02764 0.98692 1.20137 0.95207 0.96191 0.96635 1.20948 1.00074 0.93332 0.97597 1.21056 0.94166 0.97291 0.99918 1.20972 0.96037 0.89284 1.00086 1.98378 1.81240 1.31315 1.93515 1.21053 1.00501 0.93809 0.97202 1.21012 0.94542 0.96128 0.99753 0.93270 0.94544 0.95638 0.89109 0.94931 0.92871 0.84589 0.89171 0.92491 0.76769 0.92301 0.91696 0.91223 0.84910 0.84724 0.84767 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.73 37.16 0.36 -2.52 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.22 1.98 -68.86 -0.14 5.08 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -14.35 8.47 -34.44 -0.29 -14.65 16 6 H 0.05 1.42 7.73 -52.49 -0.41 1.01 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.78 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -14.25 5.29 -109.21 -0.58 -14.83 16 14 C 0.05 0.88 5.99 -4.98 -0.03 0.85 16 15 C 0.52 8.25 7.84 -10.99 -0.09 8.16 16 16 O -0.53 -10.21 15.98 5.55 0.09 -10.12 16 17 N -0.74 -8.62 5.03 -54.94 -0.28 -8.90 16 18 C 0.18 1.90 2.77 -69.09 -0.19 1.71 16 19 H 0.10 1.16 7.44 -51.93 -0.39 0.77 16 20 C -0.16 -1.54 9.46 37.16 0.35 -1.19 16 21 C -0.08 -0.71 4.95 -104.62 -0.52 -1.23 16 22 C -0.10 -0.81 9.05 -39.59 -0.36 -1.16 16 23 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 24 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 25 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.10 16 26 C -0.11 -0.84 9.83 -39.55 -0.39 -1.22 16 27 C -0.10 -0.77 9.67 -39.59 -0.38 -1.15 16 28 H 0.05 1.02 7.87 -51.93 -0.41 0.61 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 2.41 5.97 -51.93 -0.31 2.10 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.34 7.41 8.29 -39.29 -0.33 7.09 16 35 H 0.09 1.51 7.92 -51.93 -0.41 1.10 16 36 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.40 3.74 6.88 -40.82 -0.28 3.46 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.13 0.87 6.93 -52.49 -0.36 0.50 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.14 0.88 8.04 -52.48 -0.42 0.46 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -29.69 380.24 -10.13 -39.83 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.65 Total: 8.61 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.55 Total: -10.07 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.23 Total: -47.51 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.69 -10.13 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517956413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.968 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds