Wall clock time and date at job start Tue Mar 31 2020 14:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47003 * 2 1 4 4 H 1.08995 * 109.47169 * 52.61612 * 3 2 1 5 5 C 1.50697 * 109.46992 * 292.61266 * 3 2 1 6 6 H 1.08003 * 119.99818 * 60.79149 * 5 3 2 7 7 C 1.37874 * 120.00723 * 240.78831 * 5 3 2 8 8 N 1.31517 * 119.99607 * 291.15746 * 7 5 3 9 9 Si 1.86797 * 120.00197 * 111.14884 * 7 5 3 10 10 H 1.48499 * 109.46956 * 115.56246 * 9 7 5 11 11 H 1.48496 * 109.47312 * 235.56864 * 9 7 5 12 12 H 1.48502 * 109.47010 * 355.56463 * 9 7 5 13 13 N 1.46904 * 109.46792 * 172.62064 * 3 2 1 14 14 C 1.46900 * 110.99723 * 276.50031 * 13 3 2 15 15 C 1.50701 * 109.47122 * 184.42737 * 14 13 3 16 16 O 1.21288 * 120.00198 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99986 * 180.02562 * 15 14 13 18 18 C 1.39982 * 120.00198 * 184.77821 * 17 15 14 19 19 C 1.38857 * 120.06841 * 91.36241 * 18 17 15 20 20 C 1.50699 * 120.03322 * 0.02562 * 19 18 17 21 21 C 1.38122 * 119.93838 * 179.97438 * 19 18 17 22 22 C 1.38295 * 120.09394 * 0.02562 * 21 19 18 23 23 C 1.50696 * 119.92936 * 179.97438 * 22 21 19 24 24 C 1.38267 * 120.14774 * 359.97438 * 22 21 19 25 25 C 1.38231 * 120.05560 * 359.75495 * 24 22 21 26 26 Cl 1.73600 * 120.04482 * 180.25214 * 25 24 22 27 27 H 1.08993 * 109.47467 * 64.20692 * 1 2 3 28 28 H 1.09008 * 109.47013 * 184.21149 * 1 2 3 29 29 H 1.09004 * 109.46969 * 304.20257 * 1 2 3 30 30 H 1.08995 * 109.47185 * 239.99769 * 2 1 3 31 31 H 1.09003 * 109.47075 * 119.99578 * 2 1 3 32 32 H 0.96998 * 119.99459 * 179.97438 * 8 7 5 33 33 H 1.00900 * 111.00316 * 40.45672 * 13 3 2 34 34 H 1.09002 * 109.47903 * 304.43028 * 14 13 3 35 35 H 1.09006 * 109.47009 * 64.42940 * 14 13 3 36 36 H 0.97004 * 120.00470 * 4.77999 * 17 15 14 37 37 H 1.09000 * 109.47128 * 90.00064 * 20 19 18 38 38 H 1.09004 * 109.47109 * 210.00006 * 20 19 18 39 39 H 1.09001 * 109.47035 * 329.99973 * 20 19 18 40 40 H 1.07998 * 119.95721 * 180.02562 * 21 19 18 41 41 H 1.08997 * 109.47065 * 89.99348 * 23 22 21 42 42 H 1.08997 * 109.47287 * 209.99701 * 23 22 21 43 43 H 1.09000 * 109.46816 * 329.99893 * 23 22 21 44 44 H 1.07997 * 119.97081 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5728 1.9930 0.8165 5 6 1.6923 2.0982 -1.3116 6 1 0.6586 2.1981 -1.6081 7 6 2.6937 2.5706 -2.1331 8 7 3.4055 3.6147 -1.7685 9 14 3.0398 1.7275 -3.7637 10 1 2.7451 2.6643 -4.8776 11 1 4.4681 1.3253 -3.8197 12 1 2.1810 0.5226 -3.8900 13 7 3.4982 1.4463 0.1779 14 6 3.8552 1.3509 1.5996 15 6 5.3501 1.4668 1.7510 16 8 6.0493 1.6149 0.7710 17 7 5.9102 1.4060 2.9753 18 6 7.2863 1.6135 3.1266 19 6 7.7741 2.8892 3.3770 20 6 6.8225 4.0525 3.4868 21 6 9.1324 3.0907 3.5264 22 6 10.0068 2.0240 3.4264 23 6 11.4881 2.2482 3.5894 24 6 9.5251 0.7522 3.1772 25 6 8.1665 0.5425 3.0322 26 17 7.5614 -1.0555 2.7258 27 1 -0.3634 0.4471 -0.9252 28 1 -0.3633 -1.0250 0.0755 29 1 -0.3633 0.5777 0.8500 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.1102 3.9468 -2.3463 33 1 3.9293 0.7050 -0.3538 34 1 3.3706 2.1567 2.1510 35 1 3.5236 0.3902 1.9939 36 1 5.3598 1.2184 3.7517 37 1 6.5073 4.1675 4.5239 38 1 7.3221 4.9631 3.1559 39 1 5.9499 3.8685 2.8601 40 1 9.5121 4.0827 3.7216 41 1 11.7590 2.1370 4.6393 42 1 12.0340 1.5166 2.9938 43 1 11.7426 3.2533 3.2531 44 1 10.2105 -0.0789 3.1000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521456893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:38 Heat of formation + Delta-G solvation = -8.768437 kcal Electronic energy + Delta-G solvation = -25356.730961 eV Core-core repulsion = 21721.113642 eV Total energy + Delta-G solvation = -3635.617319 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43641 -38.66776 -36.55951 -36.10977 -34.92123 -32.77445 -32.24802 -31.69675 -31.20252 -27.71952 -27.38306 -26.26603 -24.42375 -22.73282 -22.33182 -20.99971 -20.12672 -19.95879 -17.71740 -16.97126 -16.46097 -15.89093 -15.63172 -14.84214 -14.54007 -14.28020 -14.22972 -13.90734 -13.66494 -13.53793 -13.27979 -13.16707 -12.97373 -12.71379 -12.63977 -12.49272 -12.12565 -11.87831 -11.66691 -11.51296 -11.42401 -11.09155 -11.05769 -10.93272 -10.77214 -10.44500 -10.40890 -9.95641 -9.73258 -9.47602 -9.31344 -9.20510 -8.76531 -8.62879 -7.51246 -7.02977 -6.39140 -3.50913 0.96653 1.06851 2.07310 3.06752 3.21836 3.44438 3.46099 3.66632 3.74828 4.55840 4.56132 4.72477 4.93860 4.97629 5.04113 5.08407 5.20781 5.32557 5.34171 5.43800 5.49332 5.57736 5.64174 5.70045 5.86875 5.92018 5.96233 6.09220 6.09669 6.11713 6.23168 6.33077 6.37292 6.47877 6.69568 6.87207 6.90540 7.01514 7.12508 7.39852 7.59733 7.86320 8.24142 8.56630 8.64178 8.81958 9.35747 9.83183 10.73063 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.003523 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.858878 B = 7944.995084 C = 8383.932620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 C 0.236 3.764 4 H 0.014 0.986 5 C -0.659 4.659 6 H 0.068 0.932 7 C 0.196 3.804 8 N -0.721 5.721 9 Si 0.754 3.246 10 H -0.289 1.289 11 H -0.281 1.281 12 H -0.269 1.269 13 N -0.641 5.641 14 C 0.048 3.952 15 C 0.517 3.483 16 O -0.498 6.498 17 N -0.698 5.698 18 C 0.148 3.852 19 C -0.059 4.059 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.072 4.072 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.020 4.020 26 Cl -0.061 7.061 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.259 0.741 33 H 0.331 0.669 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.406 0.594 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.840 -2.983 16.890 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.191 4.191 3 C 0.128 3.872 4 H 0.032 0.968 5 C -0.687 4.687 6 H 0.086 0.914 7 C -0.026 4.026 8 N -0.342 5.342 9 Si 0.573 3.427 10 H -0.215 1.215 11 H -0.207 1.207 12 H -0.193 1.193 13 N -0.271 5.271 14 C -0.085 4.085 15 C 0.305 3.695 16 O -0.368 6.368 17 N -0.353 5.353 18 C 0.056 3.944 19 C -0.061 4.061 20 C -0.170 4.170 21 C -0.133 4.133 22 C -0.072 4.072 23 C -0.169 4.169 24 C -0.137 4.137 25 C -0.048 4.048 26 Cl -0.032 7.032 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.243 0.757 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.452 -2.079 16.127 21.103 hybrid contribution -0.105 -1.902 -0.585 1.993 sum 13.346 -3.982 15.542 20.869 Atomic orbital electron populations 1.21531 0.96816 0.98650 1.01831 1.22530 0.96179 1.02099 0.98276 1.19070 0.81538 0.89408 0.97225 0.96818 1.19923 0.92783 1.51084 1.04866 0.91421 1.24373 0.93363 0.90272 0.94618 1.71006 1.14102 1.13357 1.35734 0.88776 0.78683 0.84859 0.90336 1.21524 1.20655 1.19310 1.60370 1.12215 1.52035 1.02437 1.21771 0.89944 1.00806 0.95999 1.21246 0.91406 0.75141 0.81729 1.90734 1.63674 1.45007 1.37377 1.43518 1.05436 1.75839 1.10466 1.17068 0.84272 0.91041 1.02059 1.20122 0.94695 0.93854 0.97435 1.20761 0.98822 0.95025 1.02434 1.20913 0.91879 0.99056 1.01443 1.19841 0.96401 0.92397 0.98579 1.20788 0.90861 1.02895 1.02370 1.20792 0.92872 0.97591 1.02413 1.21301 0.93759 0.86473 1.03314 1.98371 1.88349 1.22400 1.94110 0.91914 0.95329 0.94115 0.92983 0.96065 0.93051 0.85168 0.88704 0.94124 0.75719 0.90838 0.91075 0.90575 0.85167 0.90897 0.91287 0.91151 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.68 37.16 0.36 -2.11 16 2 C -0.15 -3.16 5.38 -26.73 -0.14 -3.30 16 3 C 0.24 5.65 2.58 -68.86 -0.18 5.47 16 4 H 0.01 0.34 7.75 -51.93 -0.40 -0.06 16 5 C -0.66 -18.17 8.20 -34.44 -0.28 -18.46 16 6 H 0.07 1.94 7.33 -52.48 -0.38 1.55 16 7 C 0.20 5.48 4.23 -17.82 -0.08 5.40 16 8 N -0.72 -20.63 13.64 55.43 0.76 -19.87 16 9 Si 0.75 19.71 29.68 -169.99 -5.05 14.66 16 10 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.64 -14.88 4.54 -109.22 -0.50 -15.37 16 14 C 0.05 0.88 5.98 -4.98 -0.03 0.85 16 15 C 0.52 9.39 7.27 -10.99 -0.08 9.31 16 16 O -0.50 -11.46 16.28 5.55 0.09 -11.37 16 17 N -0.70 -9.69 3.75 -9.84 -0.04 -9.73 16 18 C 0.15 2.09 5.26 -83.64 -0.44 1.65 16 19 C -0.06 -0.75 5.90 -104.44 -0.62 -1.37 16 20 C -0.11 -1.31 9.77 36.01 0.35 -0.96 16 21 C -0.11 -1.24 9.35 -39.60 -0.37 -1.61 16 22 C -0.07 -0.74 5.88 -104.59 -0.62 -1.36 16 23 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 24 C -0.12 -1.36 9.48 -39.57 -0.38 -1.74 16 25 C -0.02 -0.28 6.34 -39.32 -0.25 -0.52 16 26 Cl -0.06 -0.84 28.44 -51.86 -1.47 -2.32 16 27 H 0.06 1.28 7.11 -51.93 -0.37 0.91 16 28 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 1.15 8.13 -51.93 -0.42 0.73 16 31 H 0.02 0.39 7.28 -51.93 -0.38 0.01 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.33 8.00 8.37 -39.29 -0.33 7.67 16 34 H 0.09 1.63 7.95 -51.93 -0.41 1.22 16 35 H 0.04 0.66 7.34 -51.93 -0.38 0.27 16 36 H 0.41 4.31 8.83 -40.82 -0.36 3.95 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.08 1.07 6.98 -51.93 -0.36 0.71 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 43 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -32.61 381.26 -9.58 -42.19 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.73 Total: 5.24 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.38 Total: -9.18 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.22 Total: -44.98 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.05 Total: 14.66 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.47 Total: -2.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.61 -9.58 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521456893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.419 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds