Wall clock time and date at job start Tue Mar 31 2020 14:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47098 * 2 1 4 4 H 1.09007 * 109.46704 * 181.59869 * 3 2 1 5 5 C 1.50697 * 109.47260 * 301.59731 * 3 2 1 6 6 H 1.08003 * 119.99868 * 114.37976 * 5 3 2 7 7 C 1.37881 * 120.00221 * 294.38846 * 5 3 2 8 8 N 1.31507 * 119.99959 * 355.25333 * 7 5 3 9 9 Si 1.86802 * 120.00025 * 175.25472 * 7 5 3 10 10 H 1.48497 * 109.47147 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46846 * 299.99728 * 9 7 5 12 12 H 1.48498 * 109.47107 * 59.99561 * 9 7 5 13 13 N 1.46898 * 109.47184 * 61.60302 * 3 2 1 14 14 C 1.46895 * 111.00187 * 89.14958 * 13 3 2 15 15 C 1.50708 * 109.47040 * 184.78251 * 14 13 3 16 16 O 1.21285 * 119.99791 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99715 * 179.97438 * 15 14 13 18 18 C 1.39979 * 119.99614 * 185.08974 * 17 15 14 19 19 C 1.38855 * 120.07172 * 130.47447 * 18 17 15 20 20 C 1.50699 * 120.02831 * 359.97438 * 19 18 17 21 21 C 1.38114 * 119.93842 * 179.97438 * 19 18 17 22 22 C 1.38292 * 120.09566 * 359.97438 * 21 19 18 23 23 C 1.50705 * 119.92484 * 179.97438 * 22 21 19 24 24 C 1.38259 * 120.15215 * 0.02562 * 22 21 19 25 25 C 1.38237 * 120.05155 * 359.74011 * 24 22 21 26 26 Cl 1.73596 * 120.04383 * 180.25887 * 25 24 22 27 27 H 1.08995 * 109.46758 * 304.47452 * 1 2 3 28 28 H 1.09000 * 109.46956 * 64.47285 * 1 2 3 29 29 H 1.08998 * 109.47082 * 184.47432 * 1 2 3 30 30 H 1.09003 * 109.47124 * 240.00201 * 2 1 3 31 31 H 1.08996 * 109.47185 * 119.99942 * 2 1 3 32 32 H 0.97007 * 119.99776 * 354.83629 * 8 7 5 33 33 H 1.00906 * 110.99625 * 325.19458 * 13 3 2 34 34 H 1.08998 * 109.47473 * 304.77898 * 14 13 3 35 35 H 1.08997 * 109.47219 * 64.78194 * 14 13 3 36 36 H 0.96994 * 120.00478 * 5.09682 * 17 15 14 37 37 H 1.09002 * 109.46653 * 90.00790 * 20 19 18 38 38 H 1.08997 * 109.46879 * 210.00184 * 20 19 18 39 39 H 1.08998 * 109.47145 * 330.00591 * 20 19 18 40 40 H 1.08004 * 119.94987 * 180.02562 * 21 19 18 41 41 H 1.09005 * 109.46824 * 90.00319 * 23 22 21 42 42 H 1.09003 * 109.46901 * 210.00152 * 23 22 21 43 43 H 1.09000 * 109.47198 * 330.00200 * 23 22 21 44 44 H 1.07993 * 119.97503 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0287 5 6 1.5056 2.1643 -1.2101 6 1 0.8149 2.9855 -1.0878 7 6 1.8983 1.7762 -2.4736 8 7 2.8093 0.8392 -2.6202 9 14 1.1363 2.5814 -3.9771 10 1 1.7250 1.9917 -5.2062 11 1 -0.3309 2.3521 -3.9712 12 1 1.4094 4.0408 -3.9489 13 7 1.5823 2.1238 1.2183 14 6 2.5460 1.9488 2.3130 15 6 1.9899 2.5586 3.5741 16 8 0.8984 3.0872 3.5618 17 7 2.7056 2.5163 4.7154 18 6 2.1467 2.9864 5.9096 19 6 2.1986 2.2057 7.0567 20 6 2.8564 0.8504 7.0174 21 6 1.6468 2.6724 8.2337 22 6 1.0434 3.9161 8.2713 23 6 0.4420 4.4213 9.5575 24 6 0.9896 4.6967 7.1314 25 6 1.5441 4.2377 5.9513 26 17 1.4824 5.2208 4.5218 27 1 -0.3633 0.5817 0.8472 28 1 -0.3633 0.4429 -0.9274 29 1 -0.3633 -1.0245 0.0802 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2591 0.4740 -1.8421 33 1 0.6649 1.8024 1.4893 34 1 2.7260 0.8857 2.4723 35 1 3.4833 2.4412 2.0541 36 1 3.6078 2.1603 4.7092 37 1 3.9142 0.9528 7.2595 38 1 2.3792 0.1937 7.7448 39 1 2.7515 0.4244 6.0196 40 1 1.6874 2.0654 9.1261 41 1 1.1964 4.9719 10.1196 42 1 -0.3963 5.0806 9.3323 43 1 0.0911 3.5770 10.1508 44 1 0.5173 5.6673 7.1639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521456894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:41 Heat of formation + Delta-G solvation = -15.114423 kcal Electronic energy + Delta-G solvation = -25204.275720 eV Core-core repulsion = 21568.383218 eV Total energy + Delta-G solvation = -3635.892502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63810 -38.87782 -36.61492 -36.29809 -35.18192 -32.91066 -32.67589 -31.43908 -30.69234 -27.66574 -27.49081 -26.12993 -24.39643 -23.51571 -22.62929 -21.03591 -20.31247 -19.55769 -17.94592 -17.31579 -16.45377 -16.08769 -15.62766 -15.38176 -14.67127 -14.40940 -14.10563 -13.88565 -13.66222 -13.64721 -13.52430 -13.37044 -13.15045 -12.92032 -12.67651 -12.52598 -12.25631 -12.00552 -11.84695 -11.67489 -11.50699 -11.11299 -11.01531 -10.76015 -10.74368 -10.29382 -10.09559 -10.03944 -9.93952 -9.87417 -9.38111 -8.73536 -8.59594 -8.28957 -8.26761 -7.33846 -6.27515 -3.96726 0.95320 1.00408 2.27936 2.82506 3.04885 3.38068 3.49830 3.50911 3.69463 4.42763 4.50017 4.57114 4.83473 4.93135 4.97300 5.00830 5.17731 5.22234 5.27067 5.31974 5.34708 5.41335 5.54806 5.60410 5.69779 5.76977 5.82217 5.88030 6.05693 6.09407 6.13760 6.24726 6.30700 6.35661 6.67440 6.73142 6.92026 6.98234 7.25975 7.27777 7.36411 7.89033 8.28822 8.31641 8.44733 8.68961 8.94987 9.70644 11.08260 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002931 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.835140 B = 9550.673372 C =10236.262052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 C 0.205 3.795 4 H 0.025 0.975 5 C -0.566 4.566 6 H 0.057 0.943 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.660 5.660 14 C 0.047 3.953 15 C 0.504 3.496 16 O -0.486 6.486 17 N -0.684 5.684 18 C 0.150 3.850 19 C -0.090 4.090 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.085 4.085 23 C -0.111 4.111 24 C -0.108 4.108 25 C -0.027 4.027 26 Cl -0.033 7.033 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.339 0.661 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 2.227 24.772 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.191 4.191 3 C 0.097 3.903 4 H 0.043 0.957 5 C -0.605 4.605 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.294 5.294 14 C -0.086 4.086 15 C 0.291 3.709 16 O -0.357 6.357 17 N -0.333 5.333 18 C 0.055 3.945 19 C -0.092 4.092 20 C -0.170 4.170 21 C -0.126 4.126 22 C -0.086 4.086 23 C -0.168 4.168 24 C -0.127 4.127 25 C -0.056 4.056 26 Cl -0.003 7.003 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.202 3.253 22.671 22.904 hybrid contribution 0.407 -0.993 1.828 2.119 sum 0.609 2.260 24.499 24.610 Atomic orbital electron populations 1.21560 0.96690 0.98400 1.02117 1.22228 0.96231 1.01108 0.99538 1.19368 0.94975 0.88323 0.87626 0.95721 1.21850 1.29447 1.18389 0.90776 0.92503 1.25712 0.96159 0.95955 1.00730 1.70817 1.24252 1.26489 1.34017 0.83588 0.75719 0.75605 0.75659 1.21030 1.21514 1.21522 1.60641 1.03833 1.62679 1.02244 1.21805 0.98854 0.98270 0.89696 1.21176 0.85894 0.79585 0.84218 1.90790 1.20677 1.39690 1.84496 1.43572 1.18478 1.64961 1.06292 1.17243 0.99500 0.91018 0.86730 1.19773 1.00760 0.96165 0.92528 1.20742 1.00258 0.92608 1.03406 1.20792 0.98862 0.95842 0.97141 1.19794 0.99022 0.94445 0.95358 1.20764 1.00556 1.01542 0.93897 1.20823 1.00562 1.00674 0.90627 1.21039 1.02944 0.91924 0.89676 1.98424 1.96676 1.68460 1.36750 0.94335 0.91303 0.95348 0.91001 0.96342 0.92183 0.84003 0.93443 0.88786 0.75445 0.90846 0.91008 0.91184 0.85331 0.91025 0.91343 0.91354 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.41 37.16 0.35 -2.41 16 2 C -0.15 -3.41 5.50 -26.73 -0.15 -3.56 16 3 C 0.21 5.00 1.96 -68.87 -0.14 4.86 16 4 H 0.02 0.64 7.18 -51.93 -0.37 0.27 16 5 C -0.57 -15.69 7.51 -34.44 -0.26 -15.94 16 6 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 7 C 0.02 0.49 5.28 -17.82 -0.09 0.39 16 8 N -0.92 -26.90 12.90 55.43 0.71 -26.18 16 9 Si 1.07 25.42 29.91 -169.99 -5.08 20.34 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.66 -14.42 5.96 -109.22 -0.65 -15.07 16 14 C 0.05 0.80 5.96 -4.97 -0.03 0.78 16 15 C 0.50 8.24 6.87 -10.98 -0.08 8.17 16 16 O -0.49 -9.60 12.47 5.55 0.07 -9.53 16 17 N -0.68 -8.59 4.24 -9.83 -0.04 -8.64 16 18 C 0.15 1.93 5.98 -83.64 -0.50 1.43 16 19 C -0.09 -0.92 5.90 -104.44 -0.62 -1.54 16 20 C -0.11 -0.87 9.63 36.00 0.35 -0.52 16 21 C -0.11 -0.98 9.35 -39.61 -0.37 -1.35 16 22 C -0.09 -0.81 5.88 -104.59 -0.62 -1.42 16 23 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 24 C -0.11 -1.23 9.48 -39.57 -0.38 -1.60 16 25 C -0.03 -0.37 5.84 -39.32 -0.23 -0.60 16 26 Cl -0.03 -0.52 24.63 -51.86 -1.28 -1.80 16 27 H 0.04 0.78 6.12 -51.93 -0.32 0.46 16 28 H 0.07 1.60 7.34 -51.93 -0.38 1.22 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.79 6.27 -51.93 -0.33 1.47 16 31 H 0.02 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.27 7.71 6.01 -40.82 -0.25 7.47 16 33 H 0.34 7.47 5.75 -39.29 -0.23 7.24 16 34 H 0.05 0.74 7.63 -51.93 -0.40 0.35 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.41 3.84 8.56 -40.82 -0.35 3.49 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.07 0.58 7.42 -51.93 -0.39 0.20 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 43 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -32.55 366.67 -9.53 -42.08 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.40 Total: 6.94 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.39 Total: -13.67 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.02 Total: -49.89 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.28 Total: -1.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.55 -9.53 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521456894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.971 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds