Wall clock time and date at job start Tue Mar 31 2020 14:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00289 * 9 7 5 11 11 H 1.48505 * 109.47382 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47234 * 300.00263 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.50699 * 109.46991 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99941 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00207 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00297 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47255 * 179.97438 * 19 18 16 21 21 C 1.38241 * 120.00491 * 105.00069 * 20 19 18 22 22 C 1.38217 * 120.01182 * 179.97438 * 21 20 19 23 23 C 1.38262 * 120.03117 * 0.04554 * 22 21 20 24 24 C 1.38197 * 120.00829 * 359.97438 * 23 22 21 25 25 C 1.38328 * 120.00912 * 284.72688 * 20 19 18 26 26 Cl 1.73598 * 120.01244 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 28 28 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 29 29 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 30 30 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 31 31 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 32 32 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 33 33 H 1.00909 * 110.99674 * 329.16913 * 13 3 2 34 34 H 1.08990 * 109.47166 * 305.19100 * 14 13 3 35 35 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 36 36 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 37 37 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 38 38 H 0.97001 * 119.99590 * 359.97438 * 18 16 15 39 39 H 1.08999 * 109.47383 * 300.00195 * 19 18 16 40 40 H 1.09005 * 109.47032 * 60.00357 * 19 18 16 41 41 H 1.08002 * 119.99273 * 0.02562 * 21 20 19 42 42 H 1.08000 * 119.98353 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.99677 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.00534 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5948 0.1482 -0.2882 11 1 6.3694 0.2278 -2.7017 12 1 6.4845 2.2867 -1.4263 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2262 5.6993 2.2845 17 8 1.3619 6.1938 1.1854 18 7 0.9974 6.4867 3.3541 19 6 0.9119 7.9399 3.1890 20 6 0.6513 8.5829 4.5267 21 6 1.6704 9.2446 5.1861 22 6 1.4313 9.8349 6.4128 23 6 0.1732 9.7633 6.9817 24 6 -0.8462 9.1018 6.3237 25 6 -0.6092 8.5162 5.0926 26 17 -1.8915 7.6922 4.2616 27 1 -0.3633 0.5981 -0.8357 28 1 -0.3633 -1.0227 -0.1001 29 1 -0.3633 0.4248 0.9358 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.7978 -0.0492 -2.9747 33 1 0.7987 1.7197 1.6188 34 1 2.5182 3.9269 0.6895 35 1 0.7651 3.7925 0.4126 36 1 0.3756 3.8293 2.8612 37 1 2.1288 3.9637 3.1380 38 1 0.8892 6.0913 4.2332 39 1 1.8508 8.3152 2.7819 40 1 0.0975 8.1807 2.5057 41 1 2.6534 9.3009 4.7421 42 1 2.2278 10.3520 6.9272 43 1 -0.0128 10.2244 7.9404 44 1 -1.8291 9.0463 6.7680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574216916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:32 Heat of formation + Delta-G solvation = -31.201146 kcal Electronic energy + Delta-G solvation = -24126.814035 eV Core-core repulsion = 20490.223960 eV Total energy + Delta-G solvation = -3636.590074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.18173 -39.23108 -36.80161 -36.35932 -35.06987 -33.05677 -31.90822 -31.42669 -31.15322 -29.19331 -26.74057 -25.84487 -23.20596 -23.09887 -22.09121 -21.50206 -20.17294 -19.46581 -17.69738 -16.84785 -16.32635 -16.19681 -16.08460 -15.46605 -15.38597 -14.68445 -14.37524 -14.25801 -13.95717 -13.91420 -13.44438 -13.33327 -13.10538 -12.72331 -12.50096 -12.05768 -11.94530 -11.91939 -11.83129 -11.64400 -11.41923 -11.10643 -11.06753 -10.75514 -10.61138 -10.52196 -9.91762 -9.87024 -9.63242 -9.57136 -9.35309 -9.15265 -9.08239 -9.00692 -8.27257 -7.17702 -5.89517 -3.93226 0.60054 0.73364 1.74759 2.84059 2.97163 3.39769 3.43189 3.43669 3.46993 4.14012 4.27979 4.48613 4.51221 4.75685 4.83889 4.92746 5.11711 5.22653 5.33459 5.37789 5.41731 5.52723 5.54973 5.70499 5.88131 5.90195 5.93301 6.00560 6.20165 6.21371 6.26959 6.34934 6.46167 6.53971 6.82814 6.89201 7.14931 7.25408 7.49857 7.56771 7.84089 7.98275 8.31577 8.39339 8.46308 8.82649 9.13736 9.71117 11.16090 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.002340 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.274301 B =11964.351218 C =12961.929410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.689 5.689 14 C 0.083 3.917 15 C -0.135 4.135 16 C 0.517 3.483 17 O -0.534 6.534 18 N -0.731 5.731 19 C 0.159 3.841 20 C -0.097 4.097 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.103 4.103 24 C -0.113 4.113 25 C -0.024 4.024 26 Cl -0.058 7.058 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.259 0.741 33 H 0.314 0.686 34 H 0.081 0.919 35 H 0.022 0.978 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 18.347 19.835 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.320 5.320 14 C -0.047 4.047 15 C -0.175 4.175 16 C 0.304 3.696 17 O -0.409 6.409 18 N -0.384 5.384 19 C 0.035 3.965 20 C -0.098 4.098 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.051 4.051 26 Cl -0.029 7.029 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.234 0.766 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.442 18.544 18.962 27.834 hybrid contribution -0.078 -0.104 -0.182 0.223 sum -8.520 18.440 18.781 27.665 Atomic orbital electron populations 1.21883 0.99644 0.99662 0.99555 1.21765 0.91193 1.00334 1.03053 1.19143 0.95501 0.89909 0.84271 0.97960 1.21161 0.91255 1.36382 1.04235 0.92157 1.24958 0.98077 0.95722 0.95853 1.69861 1.34720 1.39606 1.09536 0.86606 0.85852 0.78136 0.77053 1.20355 1.21495 1.20411 1.60694 1.35799 1.02125 1.33344 1.21510 1.01564 0.89371 0.92250 1.21673 1.03860 0.89764 1.02200 1.20965 0.75136 0.89749 0.83755 1.90723 1.48647 1.76297 1.25262 1.46022 1.75238 1.05922 1.11247 1.20131 1.03118 0.80698 0.92524 1.19857 0.92172 1.00468 0.97283 1.21155 0.98648 0.96224 0.94727 1.21295 0.97337 0.99323 0.95535 1.21196 0.92690 0.98260 1.00006 1.21105 1.00515 0.98102 0.93452 1.20948 0.89809 0.99552 0.94789 1.98410 1.49497 1.77050 1.77924 0.93879 0.94415 0.94641 0.88240 0.94054 0.93078 0.86914 0.90067 0.96016 0.89665 0.88245 0.76624 0.90285 0.90149 0.84664 0.85108 0.84970 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.65 37.16 0.36 -2.60 16 2 C -0.12 -2.99 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.60 2.02 -68.86 -0.14 5.47 16 4 H 0.00 0.08 7.85 -51.93 -0.41 -0.33 16 5 C -0.49 -13.91 8.55 -34.44 -0.29 -14.20 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -26.15 11.29 55.43 0.63 -25.53 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.69 -14.76 6.27 -107.95 -0.68 -15.43 16 14 C 0.08 1.67 4.74 -3.82 -0.02 1.65 16 15 C -0.13 -1.98 6.00 -27.88 -0.17 -2.15 16 16 C 0.52 7.74 7.83 -10.99 -0.09 7.66 16 17 O -0.53 -10.32 15.98 5.55 0.09 -10.23 16 18 N -0.73 -8.10 5.46 -61.47 -0.34 -8.43 16 19 C 0.16 1.64 5.14 -5.20 -0.03 1.61 16 20 C -0.10 -0.81 5.25 -104.59 -0.55 -1.36 16 21 C -0.09 -0.61 9.67 -39.59 -0.38 -0.99 16 22 C -0.12 -0.66 10.05 -39.58 -0.40 -1.05 16 23 C -0.10 -0.56 10.05 -39.59 -0.40 -0.96 16 24 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 25 C -0.02 -0.20 6.31 -39.50 -0.25 -0.45 16 26 Cl -0.06 -0.54 27.56 -51.86 -1.43 -1.97 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.62 6.65 -51.93 -0.35 0.27 16 30 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.31 6.03 6.65 -39.29 -0.26 5.76 16 34 H 0.08 1.87 7.88 -51.93 -0.41 1.46 16 35 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.40 3.58 8.46 -40.82 -0.35 3.23 16 39 H 0.08 0.83 7.95 -51.93 -0.41 0.42 16 40 H 0.08 0.93 7.57 -51.93 -0.39 0.54 16 41 H 0.14 0.77 8.00 -52.49 -0.42 0.35 16 42 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -32.36 379.22 -10.66 -43.02 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.65 Total: 6.04 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.98 Total: -10.20 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.39 Total: -49.39 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.36 -10.66 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574216916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.821 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds