Wall clock time and date at job start Tue Mar 31 2020 14:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47286 * 2 1 4 4 H 1.09002 * 109.46838 * 305.64483 * 3 2 1 5 5 C 1.50696 * 109.47269 * 185.64504 * 3 2 1 6 6 H 1.07998 * 119.99842 * 240.00393 * 5 3 2 7 7 C 1.37875 * 119.99840 * 59.99912 * 5 3 2 8 8 N 1.31516 * 120.00319 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00289 * 9 7 5 11 11 H 1.48505 * 109.47382 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47234 * 300.00263 * 9 7 5 13 13 N 1.46903 * 109.46936 * 65.64480 * 3 2 1 14 14 C 1.46898 * 110.99806 * 205.21786 * 13 3 2 15 15 C 1.53002 * 109.46719 * 185.19339 * 14 13 3 16 16 C 1.50699 * 109.46991 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99941 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00207 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00297 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47255 * 179.97438 * 19 18 16 21 21 C 1.38241 * 120.00491 * 105.00069 * 20 19 18 22 22 C 1.38217 * 120.01182 * 179.97438 * 21 20 19 23 23 C 1.38262 * 120.03117 * 0.04554 * 22 21 20 24 24 C 1.38197 * 120.00829 * 359.97438 * 23 22 21 25 25 C 1.38328 * 120.00912 * 284.72688 * 20 19 18 26 26 Cl 1.73598 * 120.01244 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.47156 * 54.40949 * 1 2 3 28 28 H 1.08992 * 109.47262 * 174.41151 * 1 2 3 29 29 H 1.09004 * 109.47084 * 294.41315 * 1 2 3 30 30 H 1.09003 * 109.46488 * 240.00550 * 2 1 3 31 31 H 1.08998 * 109.47087 * 120.00340 * 2 1 3 32 32 H 0.96995 * 120.00210 * 179.97438 * 8 7 5 33 33 H 1.00909 * 110.99674 * 329.16913 * 13 3 2 34 34 H 1.08990 * 109.47166 * 305.19100 * 14 13 3 35 35 H 1.08999 * 109.47131 * 65.19315 * 14 13 3 36 36 H 1.09003 * 109.47317 * 299.99607 * 15 14 13 37 37 H 1.08999 * 109.47339 * 60.00103 * 15 14 13 38 38 H 0.97001 * 119.99590 * 359.97438 * 18 16 15 39 39 H 1.08999 * 109.47383 * 300.00195 * 19 18 16 40 40 H 1.09005 * 109.47032 * 60.00357 * 19 18 16 41 41 H 1.08002 * 119.99273 * 0.02562 * 21 20 19 42 42 H 1.08000 * 119.98353 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.99677 * 179.97438 * 23 22 21 44 44 H 1.08002 * 120.00534 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1301 0.8831 -1.2523 8 7 3.3830 0.3457 -2.1918 9 14 5.9900 0.8865 -1.4259 10 1 6.5948 0.1482 -0.2882 11 1 6.3694 0.2278 -2.7017 12 1 6.4845 2.2867 -1.4263 13 7 1.6648 2.0946 1.2618 14 6 1.5792 3.5517 1.0962 15 6 1.3147 4.2045 2.4544 16 6 1.2262 5.6993 2.2845 17 8 1.3619 6.1938 1.1854 18 7 0.9974 6.4867 3.3541 19 6 0.9119 7.9399 3.1890 20 6 0.6513 8.5829 4.5267 21 6 1.6704 9.2446 5.1861 22 6 1.4313 9.8349 6.4128 23 6 0.1732 9.7633 6.9817 24 6 -0.8462 9.1018 6.3237 25 6 -0.6092 8.5162 5.0926 26 17 -1.8915 7.6922 4.2616 27 1 -0.3633 0.5981 -0.8357 28 1 -0.3633 -1.0227 -0.1001 29 1 -0.3633 0.4248 0.9358 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.7978 -0.0492 -2.9747 33 1 0.7987 1.7197 1.6188 34 1 2.5182 3.9269 0.6895 35 1 0.7651 3.7925 0.4126 36 1 0.3756 3.8293 2.8612 37 1 2.1288 3.9637 3.1380 38 1 0.8892 6.0913 4.2332 39 1 1.8508 8.3152 2.7819 40 1 0.0975 8.1807 2.5057 41 1 2.6534 9.3009 4.7421 42 1 2.2278 10.3520 6.9272 43 1 -0.0128 10.2244 7.9404 44 1 -1.8291 9.0463 6.7680 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574216916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:31 Heat of formation + Delta-G solvation = -52.311489 kcal Electronic energy + Delta-G solvation = -24127.729448 eV Core-core repulsion = 20490.223960 eV Total energy + Delta-G solvation = -3637.505487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03982 -40.14844 -38.19269 -37.43083 -36.06814 -34.87621 -33.47360 -32.56487 -31.68401 -30.65220 -28.39842 -27.07401 -24.87591 -23.70838 -23.41496 -22.38672 -21.62412 -21.18324 -18.54665 -18.31184 -17.78013 -17.16283 -16.99995 -16.73097 -16.55466 -16.08578 -15.84108 -15.60179 -14.91635 -14.79213 -14.63567 -14.56752 -14.38170 -13.89956 -13.82168 -13.57594 -13.27988 -13.16036 -12.92979 -12.63682 -12.58079 -12.54584 -12.51042 -12.31941 -12.12241 -11.96245 -11.72808 -11.55008 -11.45804 -11.05293 -10.97970 -10.42336 -10.17091 -9.94681 -9.70968 -9.05754 -8.06335 -6.18352 0.06366 0.24023 1.14335 1.41128 1.43495 1.50878 1.63608 2.15728 2.44548 2.71869 3.18669 3.49563 3.63846 3.74076 3.91375 4.06330 4.16688 4.27030 4.36965 4.38734 4.50932 4.54521 4.57862 4.58400 4.67690 4.71970 4.75770 4.93029 4.99284 5.09078 5.14498 5.23889 5.26038 5.33315 5.38214 5.40679 5.45438 5.60562 5.74755 5.82455 5.90880 6.34489 6.45757 6.50436 6.93845 7.01407 7.23621 7.50066 8.97167 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.002340 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.274301 B =11964.351218 C =12961.929410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.222 3.778 4 H -0.039 1.039 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.921 5.921 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.089 3.911 15 C -0.121 4.121 16 C 0.518 3.482 17 O -0.586 6.586 18 N -0.709 5.709 19 C 0.161 3.839 20 C -0.108 4.108 21 C -0.094 4.094 22 C -0.114 4.114 23 C -0.097 4.097 24 C -0.118 4.118 25 C -0.036 4.036 26 Cl -0.076 7.076 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.260 0.740 33 H 0.331 0.669 34 H 0.042 0.958 35 H 0.005 0.995 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.414 0.586 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.080 19.043 22.998 31.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.114 3.886 4 H -0.022 1.022 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.561 5.561 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.041 4.041 15 C -0.161 4.161 16 C 0.306 3.694 17 O -0.466 6.466 18 N -0.362 5.362 19 C 0.038 3.962 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.136 4.136 25 C -0.063 4.063 26 Cl -0.047 7.047 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.250 0.750 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.178 0.822 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.443 19.246 22.196 30.567 hybrid contribution -0.097 -0.226 -1.086 1.113 sum -8.540 19.020 21.110 29.671 Atomic orbital electron populations 1.21761 0.96240 1.01193 1.00540 1.21576 0.94249 0.98511 1.01460 1.18948 0.94170 0.90884 0.84596 1.02170 1.21446 0.92798 1.36547 1.04346 0.93123 1.25728 1.02538 0.95372 0.95549 1.70001 1.36357 1.39960 1.09818 0.85628 0.80570 0.78099 0.77421 1.19297 1.20822 1.20356 1.60571 1.36863 1.02773 1.30963 1.21359 0.98936 0.88683 0.95119 1.21511 1.06157 0.89327 0.99090 1.20970 0.74704 0.90070 0.83704 1.90711 1.51394 1.77074 1.27377 1.45824 1.73178 1.06283 1.10869 1.20093 1.02293 0.79988 0.93867 1.19678 0.92942 1.01791 0.96547 1.21338 0.98632 0.96005 0.95312 1.21628 0.98206 0.98501 0.94850 1.21575 0.92086 0.97073 1.00764 1.21347 1.01653 0.97815 0.92827 1.21067 0.89274 1.00430 0.95531 1.98401 1.50305 1.77541 1.78441 0.94996 0.92184 0.91945 0.91486 0.93868 0.93071 0.85007 0.93950 0.97707 0.86396 0.86511 0.74992 0.90700 0.91749 0.83825 0.82587 0.82153 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 9.65 71.98 0.69 -4.65 16 2 C -0.12 -5.75 5.36 30.60 0.16 -5.59 16 3 C 0.22 11.70 2.02 44.17 0.09 11.79 16 4 H -0.04 -2.36 7.85 -2.39 -0.02 -2.38 16 5 C -0.51 -29.79 8.55 25.60 0.22 -29.57 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.35 5.29 84.65 0.45 0.80 16 8 N -0.92 -55.07 11.29 21.45 0.24 -54.83 16 9 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 N -0.68 -29.16 6.27 -495.45 -3.11 -32.26 16 14 C 0.09 3.66 4.74 86.30 0.41 4.07 16 15 C -0.12 -3.43 6.00 29.85 0.18 -3.25 16 16 C 0.52 15.52 7.83 87.66 0.69 16.21 16 17 O -0.59 -23.57 15.98 -3.05 -0.05 -23.62 16 18 N -0.71 -15.22 5.46 -466.79 -2.55 -17.77 16 19 C 0.16 3.33 5.14 85.63 0.44 3.77 16 20 C -0.11 -1.70 5.25 -19.84 -0.10 -1.80 16 21 C -0.09 -1.11 9.67 22.27 0.22 -0.89 16 22 C -0.11 -0.91 10.05 22.27 0.22 -0.69 16 23 C -0.10 -0.73 10.05 22.27 0.22 -0.50 16 24 C -0.12 -1.29 9.83 22.29 0.22 -1.07 16 25 C -0.04 -0.55 6.31 22.32 0.14 -0.41 16 26 Cl -0.08 -1.37 27.56 -2.72 -0.07 -1.45 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.03 6.65 -2.39 -0.02 2.01 16 30 H 0.07 3.69 5.94 -2.39 -0.01 3.67 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.33 12.21 6.65 -89.69 -0.60 11.61 16 34 H 0.04 2.05 7.88 -2.39 -0.02 2.03 16 35 H 0.00 0.21 8.10 -2.39 -0.02 0.19 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.41 6.69 8.46 -92.71 -0.78 5.90 16 39 H 0.07 1.61 7.95 -2.39 -0.02 1.59 16 40 H 0.06 1.56 7.57 -2.38 -0.02 1.54 16 41 H 0.14 1.38 8.00 -2.91 -0.02 1.36 16 42 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 44 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -73.64 379.22 0.37 -73.27 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.37 Total: 20.63 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.25 Total: -11.80 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -5.41 Total: -104.86 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.45 kcal Total: -73.64 0.37 -73.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574216916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.961 kcal (2) G-P(sol) polarization free energy of solvation -73.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds