Wall clock time and date at job start Tue Mar 31 2020 14:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 H 1.09003 * 109.46913 * 183.89907 * 3 2 1 5 5 C 1.50700 * 109.47042 * 303.89968 * 3 2 1 6 6 H 1.08000 * 120.00014 * 115.36533 * 5 3 2 7 7 C 1.37874 * 120.00191 * 295.35546 * 5 3 2 8 8 N 1.31515 * 120.00080 * 354.19681 * 7 5 3 9 9 Si 1.86798 * 119.99986 * 174.19347 * 7 5 3 10 10 H 1.48507 * 109.47056 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47560 * 300.00204 * 9 7 5 12 12 H 1.48498 * 109.47052 * 60.00617 * 9 7 5 13 13 N 1.46896 * 109.47135 * 63.90002 * 3 2 1 14 14 C 1.46899 * 110.99857 * 80.80501 * 13 3 2 15 15 C 1.53010 * 109.46868 * 184.83675 * 14 13 3 16 16 C 1.50700 * 109.46889 * 180.02562 * 15 14 13 17 17 O 1.21289 * 120.00072 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00229 * 180.02562 * 16 15 14 19 19 C 1.46493 * 120.00149 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47131 * 179.97438 * 19 18 16 21 21 C 1.38238 * 120.00893 * 104.99632 * 20 19 18 22 22 C 1.38219 * 120.01437 * 179.97438 * 21 20 19 23 23 C 1.38256 * 120.02806 * 0.05006 * 22 21 20 24 24 C 1.38192 * 120.01303 * 359.97357 * 23 22 21 25 25 C 1.38332 * 120.00587 * 284.73280 * 20 19 18 26 26 Cl 1.73597 * 120.01654 * 359.96610 * 25 20 19 27 27 H 1.09006 * 109.47483 * 64.86845 * 1 2 3 28 28 H 1.08999 * 109.47210 * 184.86683 * 1 2 3 29 29 H 1.09003 * 109.47338 * 304.86327 * 1 2 3 30 30 H 1.09003 * 109.46846 * 240.00223 * 2 1 3 31 31 H 1.08994 * 109.47484 * 120.00578 * 2 1 3 32 32 H 0.97001 * 120.00049 * 354.16763 * 8 7 5 33 33 H 1.00898 * 111.00085 * 316.85394 * 13 3 2 34 34 H 1.09003 * 109.47152 * 304.83386 * 14 13 3 35 35 H 1.08991 * 109.47653 * 64.83747 * 14 13 3 36 36 H 1.08996 * 109.47254 * 299.99487 * 15 14 13 37 37 H 1.09001 * 109.47023 * 60.00183 * 15 14 13 38 38 H 0.97002 * 119.99128 * 0.02562 * 18 16 15 39 39 H 1.09003 * 109.47297 * 299.99757 * 19 18 16 40 40 H 1.09001 * 109.47063 * 60.00343 * 19 18 16 41 41 H 1.08005 * 119.99050 * 0.02562 * 21 20 19 42 42 H 1.08005 * 119.98601 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.99494 * 179.97438 * 23 22 21 44 44 H 1.08008 * 120.00600 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1277 1.4432 -0.0699 5 6 1.4602 2.1802 -1.1793 6 1 0.7873 3.0097 -1.0197 7 6 1.7891 1.7964 -2.4621 8 7 2.6948 0.8630 -2.6574 9 14 0.9481 2.6019 -3.9226 10 1 1.4743 2.0162 -5.1817 11 1 -0.5160 2.3672 -3.8422 12 1 1.2171 4.0622 -3.9051 13 7 1.6287 2.1072 1.2437 14 6 2.5284 1.7561 2.3506 15 6 2.0010 2.3678 3.6502 16 6 2.9243 2.0082 4.7856 17 8 3.9071 1.3290 4.5761 18 7 2.6574 2.4403 6.0340 19 6 3.5546 2.0902 7.1378 20 6 3.0353 2.6927 8.4177 21 6 2.4176 1.8904 9.3588 22 6 1.9417 2.4428 10.5330 23 6 2.0822 3.7982 10.7667 24 6 2.6991 4.6014 9.8265 25 6 3.1815 4.0479 8.6536 26 17 3.9640 5.0549 7.4758 27 1 -0.3634 0.4365 -0.9304 28 1 -0.3633 -1.0239 0.0872 29 1 -0.3634 0.5874 0.8432 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.1920 0.5047 -1.9055 33 1 0.6711 1.8864 1.4722 34 1 2.5740 0.6717 2.4518 35 1 3.5260 2.1441 2.1451 36 1 1.9554 3.4521 3.5491 37 1 1.0034 1.9797 3.8557 38 1 1.8707 2.9825 6.2016 39 1 3.6006 1.0058 7.2387 40 1 4.5521 2.4786 6.9324 41 1 2.3075 0.8315 9.1768 42 1 1.4595 1.8154 11.2682 43 1 1.7097 4.2294 11.6842 44 1 2.8092 5.6602 10.0094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574216917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:34 Heat of formation + Delta-G solvation = -54.334111 kcal Electronic energy + Delta-G solvation = -24167.016683 eV Core-core repulsion = 20529.423488 eV Total energy + Delta-G solvation = -3637.593195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09379 -40.19391 -38.66918 -37.45305 -36.12177 -35.14238 -33.20246 -32.51566 -31.69834 -30.65155 -27.91221 -26.86330 -25.47858 -23.88695 -23.71621 -22.43300 -21.45744 -21.41733 -18.90452 -18.36737 -17.84264 -17.19347 -17.08585 -16.66054 -16.24661 -16.07441 -15.78516 -15.47132 -15.29292 -14.82895 -14.73926 -14.58334 -14.43001 -14.29117 -13.92240 -13.65348 -13.35415 -13.11866 -12.78099 -12.61753 -12.57318 -12.53130 -12.48805 -12.33167 -12.02724 -11.90239 -11.84393 -11.75077 -11.66658 -11.09531 -10.61390 -10.39749 -10.21735 -9.96779 -9.72955 -9.09448 -8.49787 -6.20193 0.04300 0.22262 1.12771 1.57048 1.57140 1.64922 1.83472 2.10780 2.62452 2.69760 3.26754 3.46781 3.53130 3.71872 3.81199 4.02715 4.05547 4.24520 4.25675 4.32799 4.35786 4.36219 4.49427 4.53934 4.54684 4.61070 4.72048 4.85668 4.91349 4.93742 4.99278 5.13504 5.21574 5.22360 5.28940 5.37296 5.41756 5.43627 5.53737 5.80833 5.95476 6.19984 6.43820 6.52795 6.75578 6.78804 7.17116 7.56797 8.85359 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.002120 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.920484 B =13202.149191 C =13628.013998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.146 4.146 3 C 0.206 3.794 4 H -0.016 1.016 5 C -0.573 4.573 6 H 0.051 0.949 7 C -0.033 4.033 8 N -0.941 5.941 9 Si 1.111 2.889 10 H -0.290 1.290 11 H -0.267 1.267 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.079 3.921 15 C -0.124 4.124 16 C 0.520 3.480 17 O -0.585 6.585 18 N -0.709 5.709 19 C 0.161 3.839 20 C -0.109 4.109 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.097 4.097 24 C -0.119 4.119 25 C -0.037 4.037 26 Cl -0.077 7.077 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.254 0.746 33 H 0.339 0.661 34 H 0.014 0.986 35 H 0.041 0.959 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.414 0.586 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 5.878 32.240 33.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.186 4.186 3 C 0.097 3.903 4 H 0.002 0.998 5 C -0.611 4.611 6 H 0.069 0.931 7 C -0.230 4.230 8 N -0.580 5.580 9 Si 0.934 3.066 10 H -0.216 1.216 11 H -0.193 1.193 12 H -0.201 1.201 13 N -0.308 5.308 14 C -0.051 4.051 15 C -0.164 4.164 16 C 0.307 3.693 17 O -0.465 6.465 18 N -0.361 5.361 19 C 0.038 3.962 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.131 4.131 23 C -0.115 4.115 24 C -0.137 4.137 25 C -0.064 4.064 26 Cl -0.049 7.049 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.032 0.968 35 H 0.059 0.941 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.250 0.750 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.178 0.822 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.670 6.042 30.212 31.162 hybrid contribution 0.426 -0.708 1.458 1.676 sum -4.244 5.334 31.669 32.395 Atomic orbital electron populations 1.21449 0.94375 1.00088 1.01673 1.22070 0.98107 0.99791 0.98591 1.19096 0.92939 0.89745 0.88567 0.99834 1.22076 1.29729 1.17362 0.91977 0.93053 1.27094 0.96660 0.95874 1.03386 1.70902 1.23849 1.28421 1.34796 0.83003 0.75790 0.75292 0.72499 1.21624 1.19260 1.20102 1.60691 1.05855 1.62038 1.02228 1.21513 0.96407 0.96757 0.90432 1.21537 0.99738 1.04522 0.90648 1.20881 0.85643 0.78408 0.84367 1.90707 1.30809 1.40417 1.84548 1.45832 1.29032 1.54846 1.06418 1.20102 0.93331 0.99976 0.82795 1.19683 1.02229 0.92136 0.96990 1.21340 0.95957 1.00651 0.93167 1.21637 0.98590 0.95767 0.97147 1.21576 0.96797 0.93685 0.99429 1.21347 0.98535 1.01797 0.92057 1.21093 1.01101 0.91303 0.92924 1.98409 1.79451 1.68846 1.58146 0.93521 0.93031 0.92294 0.94387 0.94953 0.93547 0.84138 0.96803 0.94075 0.86627 0.86161 0.74985 0.90349 0.91893 0.83586 0.82480 0.82192 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.38 71.98 0.68 -4.13 16 2 C -0.15 -6.94 5.46 30.59 0.17 -6.78 16 3 C 0.21 10.65 1.95 44.17 0.09 10.74 16 4 H -0.02 -0.97 7.31 -2.39 -0.02 -0.99 16 5 C -0.57 -32.04 7.42 25.60 0.19 -31.85 16 6 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 7 C -0.03 -1.88 5.27 84.65 0.45 -1.44 16 8 N -0.94 -58.25 12.88 21.45 0.28 -57.97 16 9 Si 1.11 50.80 29.91 68.60 2.05 52.85 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.68 -28.71 6.25 -495.45 -3.10 -31.81 16 14 C 0.08 3.03 4.79 86.31 0.41 3.44 16 15 C -0.12 -3.30 5.91 29.85 0.18 -3.13 16 16 C 0.52 14.55 7.83 87.66 0.69 15.23 16 17 O -0.58 -22.08 15.98 -3.06 -0.05 -22.13 16 18 N -0.71 -14.19 5.46 -466.79 -2.55 -16.74 16 19 C 0.16 3.11 5.14 85.63 0.44 3.55 16 20 C -0.11 -1.60 5.25 -19.84 -0.10 -1.70 16 21 C -0.09 -0.96 9.67 22.27 0.22 -0.75 16 22 C -0.11 -0.79 10.05 22.27 0.22 -0.57 16 23 C -0.10 -0.67 10.04 22.26 0.22 -0.45 16 24 C -0.12 -1.27 9.83 22.29 0.22 -1.05 16 25 C -0.04 -0.56 6.31 22.33 0.14 -0.42 16 26 Cl -0.08 -1.43 27.56 -2.72 -0.07 -1.51 16 27 H 0.05 2.08 7.30 -2.38 -0.02 2.07 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.08 6.24 -2.39 -0.01 2.07 16 30 H 0.04 2.03 6.27 -2.39 -0.01 2.02 16 31 H 0.03 1.44 7.04 -2.39 -0.02 1.42 16 32 H 0.25 16.12 6.04 -92.71 -0.56 15.56 16 33 H 0.34 12.78 6.44 -89.70 -0.58 12.20 16 34 H 0.01 0.56 6.96 -2.39 -0.02 0.55 16 35 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.41 6.20 8.46 -92.71 -0.78 5.41 16 39 H 0.08 1.52 7.95 -2.39 -0.02 1.50 16 40 H 0.06 1.47 7.57 -2.39 -0.02 1.45 16 41 H 0.15 1.12 8.00 -2.91 -0.02 1.10 16 42 H 0.16 0.28 8.06 -2.91 -0.02 0.25 16 43 H 0.16 0.23 8.06 -2.91 -0.02 0.20 16 44 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -74.11 373.78 0.63 -73.49 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.13 Total: 23.11 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.20 Total: -19.29 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -5.37 Total: -106.52 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.51 kcal Total: -74.11 0.63 -73.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574216917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.153 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds