Wall clock time and date at job start Tue Mar 31 2020 14:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47027 * 2 1 4 4 H 1.09002 * 109.46966 * 54.54754 * 3 2 1 5 5 C 1.50699 * 109.47157 * 174.54631 * 3 2 1 6 6 H 1.08006 * 119.99946 * 120.00043 * 5 3 2 7 7 C 1.37878 * 120.00294 * 300.00445 * 5 3 2 8 8 N 1.31515 * 119.99724 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99911 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47621 * 59.99728 * 9 7 5 11 11 H 1.48503 * 109.47033 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46962 * 299.99626 * 9 7 5 13 13 N 1.46899 * 109.47355 * 294.55075 * 3 2 1 14 14 C 1.46898 * 111.00271 * 153.67248 * 13 3 2 15 15 H 1.09002 * 110.53855 * 30.13517 * 14 13 3 16 16 C 1.54624 * 110.48933 * 152.75280 * 14 13 3 17 17 C 1.54473 * 101.76857 * 143.47722 * 16 14 13 18 18 N 1.46763 * 105.47351 * 334.58605 * 17 16 14 19 19 C 1.40169 * 124.35262 * 196.75376 * 18 17 16 20 20 C 1.38984 * 120.08127 * 269.72618 * 19 18 17 21 21 F 1.35094 * 120.04517 * 359.97081 * 20 19 18 22 22 C 1.38346 * 119.91183 * 179.74134 * 20 19 18 23 23 C 1.38274 * 120.08458 * 0.52906 * 22 20 19 24 24 C 1.38261 * 120.16846 * 359.72205 * 23 22 20 25 25 C 1.38341 * 120.09167 * 0.02562 * 24 23 22 26 26 F 1.35098 * 120.04918 * 179.97438 * 25 24 23 27 27 C 1.34417 * 111.30175 * 17.01543 * 18 17 16 28 28 O 1.21297 * 124.94529 * 179.57760 * 27 18 17 29 29 H 1.08994 * 109.47493 * 61.60366 * 1 2 3 30 30 H 1.08997 * 109.46871 * 181.60746 * 1 2 3 31 31 H 1.09004 * 109.47129 * 301.60426 * 1 2 3 32 32 H 1.08998 * 109.46903 * 240.00627 * 2 1 3 33 33 H 1.08995 * 109.47371 * 120.00192 * 2 1 3 34 34 H 0.96994 * 119.99676 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99809 * 29.72347 * 13 3 2 36 36 H 1.08999 * 110.97043 * 25.35597 * 16 14 13 37 37 H 1.09005 * 110.96854 * 261.59480 * 16 14 13 38 38 H 1.08999 * 110.24924 * 215.58185 * 17 16 14 39 39 H 1.08999 * 110.32123 * 93.61975 * 17 16 14 40 40 H 1.07997 * 119.96186 * 180.27447 * 22 20 19 41 41 H 1.07999 * 119.91397 * 179.74447 * 23 22 20 42 42 H 1.08007 * 119.95589 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9837 0.8372 5 6 3.5409 1.4447 0.1350 6 1 4.1520 1.8873 -0.6378 7 6 4.1341 0.8816 1.2451 8 7 3.3900 0.3431 2.1863 9 14 5.9946 0.8838 1.4120 10 1 6.4901 2.2836 1.4116 11 1 6.3781 0.2227 2.6852 12 1 6.5947 0.1460 0.2715 13 7 1.6607 2.0960 -1.2597 14 6 1.5499 3.5505 -1.0858 15 1 2.2347 3.8963 -0.3114 16 6 1.8307 4.2781 -2.4209 17 6 0.8328 5.4553 -2.3541 18 7 -0.2498 5.0014 -1.4732 19 6 -1.5127 5.6046 -1.3966 20 6 -1.7410 6.6296 -0.4862 21 9 -0.7460 7.0460 0.3272 22 6 -2.9874 7.2262 -0.4172 23 6 -4.0082 6.7965 -1.2450 24 6 -3.7864 5.7736 -2.1483 25 6 -2.5414 5.1755 -2.2269 26 9 -2.3257 4.1758 -3.1095 27 6 0.1273 3.9362 -0.7452 28 8 -0.5713 3.3673 0.0670 29 1 -0.3634 0.4887 -0.9039 30 1 -0.3633 -1.0272 0.0288 31 1 -0.3633 0.5386 0.8753 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8073 -0.0526 2.9673 35 1 0.8029 1.7091 -1.6238 36 1 1.6143 3.6310 -3.2709 37 1 2.8584 4.6397 -2.4595 38 1 0.4430 5.6763 -3.3477 39 1 1.3157 6.3377 -1.9342 40 1 -3.1644 8.0258 0.2869 41 1 -4.9813 7.2614 -1.1860 42 1 -4.5863 5.4404 -2.7930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577230761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:12 Heat of formation + Delta-G solvation = -85.446496 kcal Electronic energy + Delta-G solvation = -28347.840728 eV Core-core repulsion = 24157.101719 eV Total energy + Delta-G solvation = -4190.739009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.16719 -49.13899 -40.60220 -38.78515 -36.19577 -36.04693 -33.28866 -31.77846 -30.64117 -30.42052 -28.61994 -26.94474 -25.43448 -23.57400 -23.17262 -22.61479 -21.31774 -19.81087 -19.54312 -18.36848 -17.62969 -17.36619 -16.47611 -16.17378 -15.96625 -15.81734 -15.50332 -15.45101 -15.11144 -14.64705 -14.58507 -14.11032 -13.72175 -13.53531 -13.02904 -12.98372 -12.81913 -12.53918 -12.42309 -12.26804 -12.12556 -11.88667 -11.79539 -11.43983 -11.03928 -10.86520 -10.68615 -10.60651 -9.95813 -9.92215 -9.58137 -9.53536 -9.24747 -9.06506 -8.97473 -8.93481 -8.30434 -7.31971 -5.91698 -3.97204 0.57954 0.65747 2.76881 2.81729 2.99154 3.36481 3.41156 3.43544 3.56282 4.11546 4.36691 4.46604 4.53494 4.63301 4.76828 4.86256 4.95757 5.09292 5.26313 5.37115 5.50673 5.52557 5.56308 5.60612 5.67763 5.79710 5.88825 6.18507 6.22743 6.31210 6.32748 6.39332 6.59330 6.76427 6.99383 7.06103 7.18807 7.24378 7.54149 7.81395 7.91762 8.23083 8.35390 8.42838 8.68737 9.09670 9.67152 11.13580 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.003665 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.728783 B = 7637.972524 C = 7978.912751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.216 3.784 4 H 0.014 0.986 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.654 5.654 14 C 0.073 3.927 15 H 0.121 0.879 16 C -0.118 4.118 17 C 0.107 3.893 18 N -0.586 5.586 19 C 0.081 3.919 20 C 0.136 3.864 21 F -0.122 7.122 22 C -0.162 4.162 23 C -0.060 4.060 24 C -0.162 4.162 25 C 0.136 3.864 26 F -0.122 7.122 27 C 0.494 3.506 28 O -0.505 6.505 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.260 0.740 35 H 0.323 0.677 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 15.185 -10.206 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.109 3.891 4 H 0.032 0.968 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.285 5.285 14 C -0.041 4.041 15 H 0.139 0.861 16 C -0.156 4.156 17 C -0.015 4.015 18 N -0.320 5.320 19 C -0.012 4.012 20 C 0.115 3.885 21 F -0.100 7.100 22 C -0.181 4.181 23 C -0.078 4.078 24 C -0.181 4.181 25 C 0.114 3.886 26 F -0.100 7.100 27 C 0.281 3.719 28 O -0.377 6.377 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.142 0.858 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.867 14.731 -9.789 21.872 hybrid contribution 0.269 0.003 0.665 0.718 sum -12.597 14.733 -9.124 21.425 Atomic orbital electron populations 1.21825 0.99237 0.99083 1.00124 1.21745 0.91489 1.00063 1.02900 1.19286 0.95289 0.90330 0.84221 0.96809 1.21169 0.91047 1.37074 1.04464 0.91986 1.24966 0.98061 0.95623 0.95822 1.69884 1.34770 1.39064 1.09485 0.86601 0.85769 0.78088 0.77122 1.20435 1.21510 1.20317 1.61067 1.35913 0.98772 1.32717 1.22343 0.90792 0.92824 0.98186 0.86098 1.22678 0.99222 0.95132 0.98595 1.22261 0.87137 0.98445 0.93623 1.45780 1.10273 1.31887 1.44102 1.17454 0.87154 0.97385 0.99212 1.17775 0.86113 0.94506 0.90143 1.91551 1.59829 1.88591 1.70007 1.21180 0.91268 1.02863 1.02793 1.20892 0.99067 0.94808 0.93021 1.21172 0.95676 0.98871 1.02405 1.17754 0.93458 0.87652 0.89688 1.91549 1.95319 1.57634 1.65473 1.22877 0.91642 0.78278 0.79093 1.90734 1.59623 1.54506 1.32845 0.95017 0.94754 0.93373 0.94258 0.88201 0.93003 0.85798 0.89353 0.88674 0.90620 0.90853 0.83572 0.83573 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.72 37.16 0.36 -2.85 16 2 C -0.12 -3.08 5.35 -26.73 -0.14 -3.22 16 3 C 0.22 5.54 1.87 -68.87 -0.13 5.41 16 4 H 0.01 0.41 7.69 -51.93 -0.40 0.01 16 5 C -0.50 -13.73 8.62 -34.44 -0.30 -14.03 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.89 -25.96 11.29 55.43 0.63 -25.33 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.65 -14.12 6.12 -100.97 -0.62 -14.74 16 14 C 0.07 1.38 3.02 -67.72 -0.20 1.18 16 15 H 0.12 2.50 7.72 -51.93 -0.40 2.10 16 16 C -0.12 -1.61 6.88 -25.10 -0.17 -1.79 16 17 C 0.11 1.31 7.28 -3.13 -0.02 1.28 16 18 N -0.59 -9.22 2.62 -112.13 -0.29 -9.52 16 19 C 0.08 1.16 5.40 -83.49 -0.45 0.71 16 20 C 0.14 1.76 7.31 -39.27 -0.29 1.47 16 21 F -0.12 -1.77 17.08 2.25 0.04 -1.74 16 22 C -0.16 -1.47 10.02 -39.53 -0.40 -1.87 16 23 C -0.06 -0.44 10.04 -39.56 -0.40 -0.84 16 24 C -0.16 -1.45 10.02 -39.53 -0.40 -1.85 16 25 C 0.14 1.73 7.31 -39.27 -0.29 1.44 16 26 F -0.12 -1.72 17.08 2.25 0.04 -1.68 16 27 C 0.49 9.66 7.31 -10.86 -0.08 9.58 16 28 O -0.51 -11.87 17.56 5.54 0.10 -11.78 16 29 H 0.03 0.66 6.50 -51.93 -0.34 0.32 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 2.77 5.94 -51.93 -0.31 2.46 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 35 H 0.32 6.84 6.19 -39.29 -0.24 6.60 16 36 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -32.94 359.36 -8.17 -41.11 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.46 Total: 5.65 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -3.00 Total: -3.89 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.29 Total: -49.59 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.10 Total: -11.78 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.94 -8.17 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577230761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.332 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds