Wall clock time and date at job start Tue Mar 31 2020 14:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47561 * 2 1 4 4 H 1.09005 * 109.47143 * 54.62142 * 3 2 1 5 5 C 1.50700 * 109.47395 * 174.62148 * 3 2 1 6 6 H 1.08007 * 119.99496 * 120.00250 * 5 3 2 7 7 C 1.37870 * 120.00180 * 300.00082 * 5 3 2 8 8 N 1.31523 * 119.99888 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00179 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47084 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47010 * 119.99981 * 9 7 5 12 12 H 1.48492 * 109.47255 * 239.99869 * 9 7 5 13 13 N 1.46905 * 109.46922 * 294.62398 * 3 2 1 14 14 C 1.46904 * 110.99894 * 130.22318 * 13 3 2 15 15 H 1.09000 * 110.43798 * 329.17836 * 14 13 3 16 16 C 1.54624 * 110.48323 * 206.63295 * 14 13 3 17 17 C 1.54481 * 101.76455 * 216.52579 * 16 14 13 18 18 N 1.46762 * 105.47519 * 25.41921 * 17 16 14 19 19 C 1.40164 * 124.35125 * 162.97560 * 18 17 16 20 20 C 1.38979 * 120.08754 * 269.72610 * 19 18 17 21 21 F 1.35099 * 120.04489 * 359.97438 * 20 19 18 22 22 C 1.38349 * 119.91405 * 179.74353 * 20 19 18 23 23 C 1.38271 * 120.08415 * 0.51251 * 22 20 19 24 24 C 1.38269 * 120.17157 * 359.76479 * 23 22 20 25 25 C 1.38350 * 120.08277 * 359.97438 * 24 23 22 26 26 F 1.35104 * 120.03767 * 179.97438 * 25 24 23 27 27 C 1.34662 * 111.33162 * 342.87003 * 18 17 16 28 28 O 1.21298 * 125.06675 * 180.50452 * 27 18 17 29 29 H 1.09005 * 109.47017 * 56.16493 * 1 2 3 30 30 H 1.09001 * 109.47365 * 176.16366 * 1 2 3 31 31 H 1.08995 * 109.47019 * 296.16505 * 1 2 3 32 32 H 1.08998 * 109.47273 * 239.99836 * 2 1 3 33 33 H 1.09007 * 109.47150 * 120.00194 * 2 1 3 34 34 H 0.97000 * 119.99878 * 180.02562 * 8 7 5 35 35 H 1.00900 * 111.00085 * 6.27296 * 13 3 2 36 36 H 1.08994 * 110.97577 * 334.64342 * 16 14 13 37 37 H 1.08998 * 110.96822 * 98.41245 * 16 14 13 38 38 H 1.09001 * 110.24533 * 144.41908 * 17 16 14 39 39 H 1.09000 * 110.24816 * 266.33455 * 17 16 14 40 40 H 1.07998 * 119.95997 * 180.23940 * 22 20 19 41 41 H 1.07996 * 119.91483 * 179.74208 * 23 22 20 42 42 H 1.07994 * 119.95725 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6002 1.9834 0.8379 5 6 3.5412 1.4445 0.1332 6 1 4.1513 1.8874 -0.6402 7 6 4.1356 0.8810 1.2422 8 7 3.3926 0.3422 2.1842 9 14 5.9963 0.8842 1.4076 10 1 6.5974 1.5465 0.2223 11 1 6.3827 1.6223 2.6369 12 1 6.4878 -0.5143 1.4949 13 7 1.6592 2.0965 -1.2591 14 6 1.0196 3.3944 -1.0056 15 1 0.4833 3.3757 -0.0569 16 6 0.0608 3.7602 -2.1622 17 6 0.2564 5.2893 -2.2619 18 7 1.5986 5.5481 -1.7275 19 6 2.3178 6.7330 -1.9356 20 6 3.1662 6.8500 -3.0302 21 9 3.2995 5.8213 -3.8957 22 6 3.8703 8.0232 -3.2350 23 6 3.7390 9.0745 -2.3465 24 6 2.9004 8.9598 -1.2532 25 6 2.1888 7.7918 -1.0446 26 9 1.3700 7.6805 0.0243 27 6 2.0500 4.5021 -1.0096 28 8 3.1248 4.4532 -0.4494 29 1 -0.3633 0.5722 -0.8537 30 1 -0.3634 -1.0254 -0.0688 31 1 -0.3633 0.4531 0.9223 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8108 -0.0539 2.9646 35 1 1.0604 1.4997 -1.8098 36 1 0.3597 3.2676 -3.0874 37 1 -0.9700 3.5147 -1.9067 38 1 0.1962 5.6103 -3.3019 39 1 -0.4949 5.8055 -1.6642 40 1 4.5268 8.1164 -4.0875 41 1 4.2931 9.9875 -2.5068 42 1 2.8007 9.7829 -0.5613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577230762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:15 Heat of formation + Delta-G solvation = -78.210419 kcal Electronic energy + Delta-G solvation = -28403.543477 eV Core-core repulsion = 24213.118248 eV Total energy + Delta-G solvation = -4190.425229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.05752 -48.99493 -40.37948 -38.63950 -36.22308 -35.87854 -33.25073 -31.67737 -30.52511 -30.38418 -28.55865 -26.94121 -25.36058 -23.47171 -23.05174 -22.60209 -21.53920 -19.69382 -19.46488 -18.22683 -17.52555 -17.19089 -16.52719 -16.03523 -15.80409 -15.66651 -15.33943 -15.32391 -14.91489 -14.54271 -14.46738 -13.94602 -13.73551 -13.45290 -13.30460 -12.90636 -12.75320 -12.65535 -12.36483 -12.14912 -12.06287 -11.86328 -11.67735 -11.58184 -11.04823 -10.97414 -10.70759 -10.45094 -9.85531 -9.73843 -9.60231 -9.52284 -9.12777 -8.94749 -8.79089 -8.74680 -8.15945 -7.30805 -5.79509 -3.77775 0.69900 0.77434 2.90179 3.10203 3.14639 3.45483 3.52271 3.61762 3.69113 4.23366 4.47342 4.58443 4.64145 4.66736 4.79789 4.87737 4.89292 5.17492 5.26153 5.48927 5.50213 5.57439 5.64541 5.67551 5.73892 5.81539 5.90480 5.90966 6.10879 6.13220 6.15583 6.33390 6.38248 6.78673 6.90614 7.01939 7.14353 7.25916 7.39037 7.81220 8.08439 8.30234 8.48688 8.72732 8.75993 9.29771 9.84569 11.27337 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.004477 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.376818 B = 6252.095669 C = 7218.846402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.220 3.780 4 H 0.016 0.984 5 C -0.462 4.462 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.664 5.664 14 C 0.070 3.930 15 H 0.079 0.921 16 C -0.137 4.137 17 C 0.116 3.884 18 N -0.595 5.595 19 C 0.086 3.914 20 C 0.138 3.862 21 F -0.120 7.120 22 C -0.163 4.163 23 C -0.061 4.061 24 C -0.163 4.163 25 C 0.135 3.865 26 F -0.123 7.123 27 C 0.530 3.470 28 O -0.467 6.467 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.255 0.745 35 H 0.330 0.670 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 16.538 -11.439 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.113 3.887 4 H 0.033 0.967 5 C -0.501 4.501 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.548 5.548 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.298 5.298 14 C -0.044 4.044 15 H 0.097 0.903 16 C -0.175 4.175 17 C -0.006 4.006 18 N -0.331 5.331 19 C -0.006 4.006 20 C 0.117 3.883 21 F -0.098 7.098 22 C -0.182 4.182 23 C -0.079 4.079 24 C -0.182 4.182 25 C 0.113 3.887 26 F -0.101 7.101 27 C 0.317 3.683 28 O -0.334 6.334 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.603 16.614 -11.022 21.003 hybrid contribution -0.009 -0.442 0.589 0.737 sum -6.613 16.172 -10.434 20.350 Atomic orbital electron populations 1.21884 0.99552 0.99516 0.99732 1.22022 0.91256 1.01007 1.03432 1.19334 0.96179 0.89272 0.83887 0.96653 1.21201 0.90839 1.33760 1.04267 0.91852 1.24899 0.97910 0.96156 0.95962 1.69869 1.34341 1.40834 1.09777 0.86487 0.86335 0.77008 0.77881 1.19859 1.21443 1.21491 1.60563 1.43910 1.02158 1.23165 1.22071 0.91987 0.92339 0.98043 0.90346 1.22878 1.00309 0.94147 1.00141 1.22027 0.82589 0.96832 0.99194 1.45728 1.18098 1.13771 1.55490 1.17381 0.99314 0.88117 0.95830 1.17786 0.96617 0.85505 0.88422 1.91561 1.94144 1.57009 1.67069 1.21174 1.02136 0.92233 1.02686 1.20871 0.96197 0.98527 0.92282 1.21151 0.99223 0.97219 1.00648 1.17787 0.91961 0.94091 0.84825 1.91539 1.69661 1.96351 1.52595 1.21325 0.87839 0.82368 0.76757 1.90799 1.21677 1.78810 1.42145 0.94864 0.94371 0.93787 0.94129 0.87818 0.93481 0.85034 0.89053 0.89277 0.90692 0.91152 0.83654 0.83678 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.80 37.16 0.36 -2.42 16 2 C -0.14 -3.23 5.14 -26.73 -0.14 -3.37 16 3 C 0.22 5.60 2.15 -68.86 -0.15 5.45 16 4 H 0.02 0.44 7.12 -51.93 -0.37 0.07 16 5 C -0.46 -13.60 8.20 -34.44 -0.28 -13.88 16 6 H 0.06 1.99 7.81 -52.48 -0.41 1.58 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.91 -27.02 11.29 55.43 0.63 -26.39 16 9 Si 0.89 23.52 29.54 -169.99 -5.02 18.50 16 10 H -0.27 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 N -0.66 -14.13 6.12 -100.96 -0.62 -14.75 16 14 C 0.07 1.29 3.21 -67.72 -0.22 1.08 16 15 H 0.08 1.50 7.34 -51.93 -0.38 1.11 16 16 C -0.14 -1.71 6.59 -25.10 -0.17 -1.88 16 17 C 0.12 1.40 7.28 -3.12 -0.02 1.38 16 18 N -0.59 -9.89 2.63 -112.06 -0.29 -10.18 16 19 C 0.09 1.33 5.41 -83.50 -0.45 0.88 16 20 C 0.14 1.94 7.31 -39.27 -0.29 1.65 16 21 F -0.12 -1.89 17.08 2.25 0.04 -1.85 16 22 C -0.16 -1.65 10.02 -39.53 -0.40 -2.05 16 23 C -0.06 -0.51 10.04 -39.56 -0.40 -0.90 16 24 C -0.16 -1.63 10.02 -39.53 -0.40 -2.02 16 25 C 0.13 1.85 7.31 -39.26 -0.29 1.56 16 26 F -0.12 -1.86 17.08 2.25 0.04 -1.82 16 27 C 0.53 11.21 7.64 -10.75 -0.08 11.13 16 28 O -0.47 -12.38 17.07 5.54 0.09 -12.28 16 29 H 0.03 0.53 6.78 -51.93 -0.35 0.18 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 2.77 5.95 -51.93 -0.31 2.46 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 35 H 0.33 6.10 6.38 -39.29 -0.25 5.85 16 36 H 0.09 1.11 8.01 -51.93 -0.42 0.70 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -35.55 358.26 -8.17 -43.72 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.43 Total: 1.69 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.00 Total: -2.03 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.29 Total: -51.33 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.08 Total: -3.67 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.55 -8.17 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577230762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.495 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds