Wall clock time and date at job start Tue Mar 31 2020 14:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47531 * 2 1 4 4 H 1.09001 * 109.46474 * 304.45714 * 3 2 1 5 5 C 1.50694 * 109.47515 * 184.45727 * 3 2 1 6 6 H 1.08001 * 119.99947 * 240.00378 * 5 3 2 7 7 C 1.37870 * 120.00142 * 59.99723 * 5 3 2 8 8 N 1.31517 * 120.00196 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00035 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47753 * 119.99994 * 9 7 5 12 12 H 1.48500 * 109.46906 * 239.99930 * 9 7 5 13 13 N 1.46904 * 109.46912 * 64.44963 * 3 2 1 14 14 C 1.46901 * 110.99856 * 208.72639 * 13 3 2 15 15 H 1.08998 * 110.43394 * 29.39973 * 14 13 3 16 16 C 1.54631 * 110.48066 * 151.93522 * 14 13 3 17 17 C 1.54482 * 101.76360 * 93.88342 * 16 14 13 18 18 N 1.46762 * 105.47288 * 25.41274 * 17 16 14 19 19 C 1.40178 * 124.34997 * 162.98599 * 18 17 16 20 20 C 1.38984 * 120.08399 * 269.72675 * 19 18 17 21 21 F 1.35101 * 120.04264 * 359.97438 * 20 19 18 22 22 C 1.38338 * 119.91022 * 179.69839 * 20 19 18 23 23 C 1.38270 * 120.08959 * 0.59703 * 22 20 19 24 24 C 1.38266 * 120.16655 * 359.67421 * 23 22 20 25 25 C 1.38348 * 120.08862 * 0.02743 * 24 23 22 26 26 F 1.35098 * 120.04194 * 179.97438 * 25 24 23 27 27 C 1.34421 * 111.30340 * 342.98529 * 18 17 16 28 28 O 1.21293 * 124.94305 * 180.44771 * 27 18 17 29 29 H 1.08999 * 109.47272 * 174.95007 * 1 2 3 30 30 H 1.08993 * 109.47325 * 294.95425 * 1 2 3 31 31 H 1.09001 * 109.47047 * 54.95592 * 1 2 3 32 32 H 1.09003 * 109.47242 * 239.99486 * 2 1 3 33 33 H 1.09003 * 109.47207 * 120.00279 * 2 1 3 34 34 H 0.96998 * 120.00012 * 180.02562 * 8 7 5 35 35 H 1.00903 * 110.99583 * 84.77817 * 13 3 2 36 36 H 1.08996 * 110.96529 * 211.99547 * 16 14 13 37 37 H 1.08991 * 110.97166 * 335.76555 * 16 14 13 38 38 H 1.08998 * 110.24472 * 144.41451 * 17 16 14 39 39 H 1.09000 * 110.24306 * 266.41203 * 17 16 14 40 40 H 1.08007 * 119.95937 * 180.31444 * 22 20 19 41 41 H 1.07994 * 119.91379 * 179.70369 * 23 22 20 42 42 H 1.08004 * 119.95292 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6130 1.9788 -0.8474 5 6 3.5430 1.4439 -0.1104 6 1 4.1413 1.8909 0.6697 7 6 4.1542 0.8745 -1.2072 8 7 3.4256 0.3296 -2.1570 9 14 6.0172 0.8757 -1.3437 10 1 6.6004 1.5447 -0.1531 11 1 6.5092 -0.5235 -1.4164 12 1 6.4232 1.6074 -2.5705 13 7 1.6401 2.1032 1.2496 14 6 1.4772 3.5497 1.0514 15 1 1.1742 3.7615 0.0261 16 6 0.4431 4.1195 2.0500 17 6 1.3502 4.5898 3.2087 18 7 2.6585 4.8552 2.5988 19 6 3.6726 5.6130 3.2006 20 6 3.7396 6.9842 2.9836 21 9 2.8274 7.5891 2.1917 22 6 4.7382 7.7296 3.5844 23 6 5.6762 7.1105 4.3897 24 6 5.6162 5.7457 4.6034 25 6 4.6169 4.9943 4.0111 26 9 4.5594 3.6608 4.2201 27 6 2.7594 4.2781 1.3889 28 8 3.7365 4.3329 0.6724 29 1 -0.3634 -1.0237 -0.0905 30 1 -0.3633 0.4335 0.9316 31 1 -0.3633 0.5901 -0.8414 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.8557 -0.0713 -2.9285 35 1 2.3011 1.9116 1.9875 36 1 -0.0989 4.9585 1.6138 37 1 -0.2453 3.3434 2.3840 38 1 0.9504 5.5003 3.6550 39 1 1.4370 3.8064 3.9616 40 1 4.7880 8.7960 3.4204 41 1 6.4574 7.6944 4.8534 42 1 6.3509 5.2656 5.2328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577230763.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:17 Heat of formation + Delta-G solvation = -84.949365 kcal Electronic energy + Delta-G solvation = -28667.881633 eV Core-core repulsion = 24477.164181 eV Total energy + Delta-G solvation = -4190.717452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.08893 -48.99695 -40.48708 -38.67659 -36.11446 -35.80465 -33.23902 -31.60923 -30.54111 -30.43592 -28.64210 -26.86975 -25.24692 -23.50392 -23.06932 -22.65411 -21.13662 -19.89856 -19.51962 -18.25942 -17.50649 -17.20522 -16.72365 -16.16858 -15.81933 -15.68534 -15.36689 -15.33896 -14.80745 -14.58235 -14.48444 -13.85008 -13.67054 -13.44777 -13.02051 -12.89321 -12.81430 -12.58397 -12.28200 -12.16489 -12.11410 -11.82954 -11.34029 -11.28325 -11.01507 -10.84307 -10.76564 -10.65037 -10.16171 -9.83319 -9.53344 -9.47924 -9.12110 -8.96395 -8.83656 -8.76593 -8.26968 -7.43341 -5.89592 -3.97206 0.68477 0.75864 2.93535 2.99807 3.09025 3.37017 3.44498 3.53264 3.67259 4.21858 4.45868 4.54254 4.63405 4.72245 4.85451 4.86567 5.04671 5.16719 5.29070 5.40393 5.53846 5.60996 5.62847 5.68630 5.77068 5.88986 5.97110 6.16946 6.27950 6.33111 6.40464 6.49750 6.69326 6.90734 7.08602 7.15080 7.22807 7.39202 7.55384 7.87751 7.97615 8.14935 8.26872 8.56233 8.60233 9.09251 9.69304 11.12692 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.004914 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.799744 B = 5696.097674 C = 6769.173697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.212 3.788 4 H 0.035 0.965 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.656 5.656 14 C 0.075 3.925 15 H 0.107 0.893 16 C -0.125 4.125 17 C 0.111 3.889 18 N -0.590 5.590 19 C 0.084 3.916 20 C 0.134 3.866 21 F -0.124 7.124 22 C -0.163 4.163 23 C -0.061 4.061 24 C -0.162 4.162 25 C 0.137 3.863 26 F -0.119 7.119 27 C 0.496 3.504 28 O -0.484 6.484 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.258 0.742 35 H 0.333 0.667 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 13.417 15.313 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.105 3.895 4 H 0.053 0.947 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.286 5.286 14 C -0.039 4.039 15 H 0.125 0.875 16 C -0.164 4.164 17 C -0.010 4.010 18 N -0.325 5.325 19 C -0.009 4.009 20 C 0.113 3.887 21 F -0.102 7.102 22 C -0.183 4.183 23 C -0.079 4.079 24 C -0.182 4.182 25 C 0.116 3.884 26 F -0.097 7.097 27 C 0.282 3.718 28 O -0.352 6.352 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.479 13.169 14.585 19.807 hybrid contribution 1.984 0.180 -0.292 2.014 sum -0.495 13.349 14.294 19.564 Atomic orbital electron populations 1.21696 0.98941 0.98406 1.00294 1.21507 0.92056 0.98927 1.01956 1.19372 0.93648 0.91289 0.85239 0.94712 1.21785 0.92026 1.36590 1.05969 0.92604 1.24826 0.97798 0.95100 0.95643 1.69877 1.34594 1.38942 1.09644 0.86587 0.86547 0.77141 0.78057 1.19974 1.21257 1.21172 1.61235 1.52668 1.03173 1.11504 1.22266 0.90535 0.90562 1.00560 0.87531 1.22739 0.97280 1.01277 0.95096 1.22157 0.81372 1.00761 0.96746 1.45773 1.14334 1.52661 1.19759 1.17422 0.93784 0.89368 1.00283 1.17739 0.89215 0.89447 0.92306 1.91530 1.64643 1.82819 1.71192 1.21141 0.95464 1.01244 1.00439 1.20871 0.97531 0.93500 0.95998 1.21188 0.99123 0.94656 1.03201 1.17812 0.95399 0.78273 0.96893 1.91571 1.95710 1.29589 1.92835 1.22448 0.91614 0.78015 0.79724 1.90787 1.35034 1.57309 1.52078 0.95609 0.93525 0.94391 0.88864 0.95010 0.93165 0.84987 0.90284 0.87930 0.90979 0.90897 0.83700 0.83668 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.73 37.16 0.36 -2.34 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.21 5.25 2.00 -68.87 -0.14 5.11 16 4 H 0.04 0.96 7.33 -51.93 -0.38 0.57 16 5 C -0.52 -14.82 7.51 -34.45 -0.26 -15.07 16 6 H 0.06 1.66 6.81 -52.49 -0.36 1.31 16 7 C 0.07 1.96 5.29 -17.82 -0.09 1.86 16 8 N -0.89 -26.05 11.29 55.43 0.63 -25.42 16 9 Si 0.89 23.14 29.54 -169.99 -5.02 18.12 16 10 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 N -0.66 -13.36 5.62 -100.97 -0.57 -13.93 16 14 C 0.08 1.39 3.27 -67.72 -0.22 1.17 16 15 H 0.11 2.11 7.35 -51.93 -0.38 1.72 16 16 C -0.13 -1.63 6.89 -25.10 -0.17 -1.80 16 17 C 0.11 1.41 7.28 -3.12 -0.02 1.39 16 18 N -0.59 -9.80 2.62 -112.13 -0.29 -10.09 16 19 C 0.08 1.31 5.40 -83.49 -0.45 0.86 16 20 C 0.13 1.82 7.31 -39.27 -0.29 1.54 16 21 F -0.12 -1.80 17.08 2.25 0.04 -1.77 16 22 C -0.16 -1.63 10.02 -39.53 -0.40 -2.02 16 23 C -0.06 -0.52 10.04 -39.56 -0.40 -0.92 16 24 C -0.16 -1.72 10.02 -39.53 -0.40 -2.11 16 25 C 0.14 1.99 7.31 -39.27 -0.29 1.71 16 26 F -0.12 -1.96 17.08 2.25 0.04 -1.92 16 27 C 0.50 10.20 6.93 -10.86 -0.08 10.12 16 28 O -0.48 -12.39 16.15 5.55 0.09 -12.30 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.86 7.88 -51.93 -0.41 0.45 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 2.50 5.96 -51.93 -0.31 2.19 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.33 7.07 7.99 -39.29 -0.31 6.75 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 41 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -33.41 357.89 -8.19 -41.60 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.51 Total: 3.50 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.98 Total: -3.18 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.24 Total: -49.44 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.41 -8.19 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577230763.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.349 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds