Wall clock time and date at job start Tue Mar 31 2020 14:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47074 * 2 1 4 4 H 1.09007 * 109.47355 * 305.62096 * 3 2 1 5 5 C 1.50704 * 109.47156 * 185.62198 * 3 2 1 6 6 H 1.07993 * 120.00359 * 240.27603 * 5 3 2 7 7 C 1.37877 * 119.99515 * 59.99856 * 5 3 2 8 8 N 1.31514 * 120.00685 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99969 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47149 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47448 * 119.99844 * 9 7 5 12 12 H 1.48503 * 109.47319 * 240.00194 * 9 7 5 13 13 N 1.46905 * 109.47473 * 65.62217 * 3 2 1 14 14 C 1.46901 * 111.00211 * 203.67149 * 13 3 2 15 15 H 1.08998 * 110.43468 * 329.20818 * 14 13 3 16 16 C 1.54625 * 110.48557 * 206.66375 * 14 13 3 17 17 C 1.54480 * 101.76328 * 216.52607 * 16 14 13 18 18 N 1.46768 * 105.47311 * 25.41670 * 17 16 14 19 19 C 1.40174 * 124.34827 * 162.96202 * 18 17 16 20 20 C 1.38982 * 120.08384 * 269.72555 * 19 18 17 21 21 F 1.35095 * 120.04640 * 359.97438 * 20 19 18 22 22 C 1.38350 * 119.91060 * 179.74809 * 20 19 18 23 23 C 1.38267 * 120.08480 * 0.50619 * 22 20 19 24 24 C 1.38268 * 120.17318 * 359.76745 * 23 22 20 25 25 C 1.38348 * 120.08751 * 359.97438 * 24 23 22 26 26 F 1.35093 * 120.04773 * 179.97438 * 25 24 23 27 27 C 1.34417 * 111.30097 * 342.98195 * 18 17 16 28 28 O 1.21291 * 124.94223 * 180.40770 * 27 18 17 29 29 H 1.08999 * 109.47260 * 174.35734 * 1 2 3 30 30 H 1.08997 * 109.47475 * 294.36522 * 1 2 3 31 31 H 1.08999 * 109.46796 * 54.36220 * 1 2 3 32 32 H 1.09000 * 109.47090 * 239.99796 * 2 1 3 33 33 H 1.09002 * 109.46787 * 119.99807 * 2 1 3 34 34 H 0.97000 * 120.00514 * 179.97438 * 8 7 5 35 35 H 1.00896 * 110.99895 * 327.63513 * 13 3 2 36 36 H 1.09004 * 110.96940 * 334.64077 * 16 14 13 37 37 H 1.09000 * 110.97305 * 98.40860 * 16 14 13 38 38 H 1.09005 * 110.24996 * 144.41327 * 17 16 14 39 39 H 1.08997 * 110.24632 * 266.33053 * 17 16 14 40 40 H 1.07996 * 119.95832 * 180.23085 * 22 20 19 41 41 H 1.07997 * 119.91602 * 179.74937 * 23 22 20 42 42 H 1.08002 * 119.96075 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9846 -0.8354 5 6 3.5406 1.4447 -0.1392 6 1 4.1540 1.8825 0.6343 7 6 4.1305 0.8828 -1.2515 8 7 3.3838 0.3453 -2.1912 9 14 5.9906 0.8849 -1.4238 10 1 6.5966 1.5459 -0.2401 11 1 6.4809 -0.5138 -1.5154 12 1 6.3730 1.6251 -2.6532 13 7 1.6643 2.0947 1.2615 14 6 1.6145 3.5545 1.1050 15 1 2.3350 3.8817 0.3553 16 6 1.8855 4.2534 2.4574 17 6 0.9356 5.4692 2.3795 18 7 -0.1384 5.0689 1.4628 19 6 -1.3768 5.7182 1.3640 20 6 -2.4433 5.3086 2.1554 21 9 -2.2884 4.2833 3.0214 22 6 -3.6625 5.9554 2.0587 23 6 -3.8236 7.0011 1.1685 24 6 -2.7666 7.4077 0.3754 25 6 -1.5427 6.7695 0.4701 26 9 -0.5107 7.1671 -0.3056 27 6 0.2178 3.9994 0.7306 28 8 -0.4791 3.4684 -0.1081 29 1 -0.3634 -1.0227 -0.1010 30 1 -0.3634 0.4239 0.9361 31 1 -0.3633 0.5988 -0.8352 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7989 -0.0498 -2.9739 35 1 0.7856 1.7377 1.6055 36 1 1.6205 3.6042 3.2919 37 1 2.9247 4.5743 2.5294 38 1 0.5267 5.6922 3.3650 39 1 1.4651 6.3369 1.9862 40 1 -4.4907 5.6402 2.6760 41 1 -4.7777 7.5014 1.0923 42 1 -2.8964 8.2247 -0.3191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577230764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:20 Heat of formation + Delta-G solvation = -86.002518 kcal Electronic energy + Delta-G solvation = -28346.868738 eV Core-core repulsion = 24156.105618 eV Total energy + Delta-G solvation = -4190.763120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.16510 -49.13659 -40.59731 -38.78156 -36.19327 -36.04019 -33.28773 -31.77790 -30.63843 -30.43212 -28.61793 -26.93682 -25.44044 -23.57390 -23.17048 -22.61769 -21.31094 -19.80515 -19.54181 -18.36611 -17.62620 -17.36204 -16.49245 -16.17974 -15.96237 -15.81528 -15.49304 -15.44948 -15.09488 -14.64608 -14.58274 -14.10251 -13.72475 -13.53089 -13.02830 -12.99745 -12.82299 -12.53605 -12.42017 -12.26478 -12.12631 -11.88359 -11.79233 -11.45433 -11.05922 -10.87420 -10.69190 -10.55695 -9.95343 -9.93481 -9.59889 -9.53347 -9.23270 -9.06235 -8.97199 -8.92197 -8.31640 -7.31577 -5.92411 -3.97853 0.58224 0.65965 2.77147 2.82377 2.99379 3.33709 3.41591 3.45623 3.56549 4.11795 4.36918 4.46366 4.53751 4.63683 4.77054 4.86631 4.96052 5.09558 5.26563 5.36824 5.50885 5.52786 5.56524 5.60847 5.68056 5.79938 5.89752 6.18699 6.23032 6.30901 6.31803 6.39712 6.58685 6.76815 6.99219 7.06249 7.20281 7.24213 7.54900 7.80586 7.91585 8.22431 8.35569 8.42529 8.68789 9.09739 9.66695 11.12932 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.003697 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.909588 B = 7572.884767 C = 7948.083641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.214 3.786 4 H 0.014 0.986 5 C -0.498 4.498 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.654 5.654 14 C 0.073 3.927 15 H 0.123 0.877 16 C -0.118 4.118 17 C 0.107 3.893 18 N -0.586 5.586 19 C 0.081 3.919 20 C 0.136 3.864 21 F -0.122 7.122 22 C -0.162 4.162 23 C -0.060 4.060 24 C -0.162 4.162 25 C 0.136 3.864 26 F -0.122 7.122 27 C 0.494 3.506 28 O -0.506 6.506 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.259 0.741 35 H 0.323 0.677 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 15.424 10.236 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.107 3.893 4 H 0.032 0.968 5 C -0.537 4.537 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.285 5.285 14 C -0.041 4.041 15 H 0.140 0.860 16 C -0.156 4.156 17 C -0.015 4.015 18 N -0.321 5.321 19 C -0.012 4.012 20 C 0.114 3.886 21 F -0.100 7.100 22 C -0.181 4.181 23 C -0.078 4.078 24 C -0.181 4.181 25 C 0.115 3.885 26 F -0.100 7.100 27 C 0.281 3.719 28 O -0.377 6.377 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.463 14.967 9.824 21.814 hybrid contribution 0.271 0.014 -0.699 0.750 sum -12.191 14.981 9.125 21.362 Atomic orbital electron populations 1.21837 0.99299 0.99327 0.99929 1.21726 0.91461 1.00007 1.02893 1.19310 0.95367 0.90368 0.84213 0.96787 1.21239 0.91061 1.37089 1.04281 0.91886 1.24968 0.98058 0.95611 0.95856 1.69903 1.34578 1.39202 1.09467 0.86499 0.85802 0.77596 0.77821 1.19757 1.21159 1.21281 1.61059 1.34548 0.99251 1.33600 1.22334 0.91515 0.92404 0.97885 0.85982 1.22682 0.99727 0.94815 0.98423 1.22260 0.87512 0.98812 0.92883 1.45784 1.12424 1.31428 1.42415 1.17457 0.87386 0.96587 0.99774 1.17757 0.93610 0.87012 0.90181 1.91548 1.96118 1.55833 1.66478 1.21174 0.96226 0.98290 1.02436 1.20891 0.98767 0.94976 0.93160 1.21180 0.91308 1.02671 1.02943 1.17775 0.85457 0.94438 0.90867 1.91551 1.56960 1.89300 1.72163 1.22881 0.91117 0.78355 0.79512 1.90732 1.58552 1.56805 1.31659 0.94687 0.95035 0.93342 0.88213 0.94228 0.93113 0.85872 0.89381 0.88673 0.90629 0.90833 0.83581 0.83575 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.64 37.16 0.36 -2.86 16 2 C -0.12 -3.05 5.37 -26.73 -0.14 -3.19 16 3 C 0.21 5.51 1.89 -68.86 -0.13 5.38 16 4 H 0.01 0.42 7.60 -51.93 -0.39 0.03 16 5 C -0.50 -13.69 8.48 -34.44 -0.29 -13.99 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.89 -25.94 11.29 55.43 0.63 -25.32 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.65 -14.11 6.11 -100.96 -0.62 -14.73 16 14 C 0.07 1.39 3.02 -67.72 -0.20 1.18 16 15 H 0.12 2.53 7.63 -51.93 -0.40 2.13 16 16 C -0.12 -1.62 6.88 -25.10 -0.17 -1.79 16 17 C 0.11 1.31 7.28 -3.12 -0.02 1.28 16 18 N -0.59 -9.25 2.62 -112.12 -0.29 -9.54 16 19 C 0.08 1.16 5.40 -83.49 -0.45 0.71 16 20 C 0.14 1.73 7.31 -39.26 -0.29 1.45 16 21 F -0.12 -1.73 17.08 2.25 0.04 -1.69 16 22 C -0.16 -1.46 10.02 -39.53 -0.40 -1.86 16 23 C -0.06 -0.44 10.04 -39.56 -0.40 -0.84 16 24 C -0.16 -1.48 10.02 -39.53 -0.40 -1.87 16 25 C 0.14 1.76 7.31 -39.26 -0.29 1.47 16 26 F -0.12 -1.78 17.08 2.25 0.04 -1.74 16 27 C 0.49 9.70 7.31 -10.86 -0.08 9.62 16 28 O -0.51 -11.95 17.42 5.55 0.10 -11.85 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.64 6.65 -51.93 -0.35 0.30 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 2.76 5.94 -51.93 -0.31 2.45 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.32 6.82 6.29 -39.29 -0.25 6.58 16 36 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -33.03 359.07 -8.18 -41.21 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.46 Total: 5.63 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -3.00 Total: -3.84 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.29 Total: -49.59 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.10 Total: -11.85 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.03 -8.18 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577230764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.796 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds