Wall clock time and date at job start Tue Mar 31 2020 14:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47421 * 2 1 4 4 H 1.09000 * 109.46854 * 304.48612 * 3 2 1 5 5 C 1.50694 * 109.47314 * 184.48601 * 3 2 1 6 6 H 1.08006 * 120.00184 * 245.41944 * 5 3 2 7 7 C 1.37874 * 120.00380 * 65.41115 * 5 3 2 8 8 N 1.31511 * 120.00499 * 192.33639 * 7 5 3 9 9 Si 1.86806 * 119.99737 * 12.33766 * 7 5 3 10 10 H 1.48503 * 109.47024 * 95.30635 * 9 7 5 11 11 H 1.48493 * 109.47210 * 215.30237 * 9 7 5 12 12 H 1.48499 * 109.47243 * 335.30639 * 9 7 5 13 13 N 1.46901 * 109.47020 * 64.48522 * 3 2 1 14 14 C 1.46901 * 110.99850 * 257.36164 * 13 3 2 15 15 C 1.50698 * 109.47362 * 184.42256 * 14 13 3 16 16 O 1.21281 * 119.99775 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00331 * 179.97438 * 15 14 13 18 18 C 1.46506 * 120.00250 * 180.02562 * 17 15 14 19 19 C 1.52992 * 109.47323 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47404 * 179.97438 * 19 18 17 21 21 C 1.38247 * 119.98732 * 269.73129 * 20 19 18 22 22 C 1.38210 * 120.01265 * 179.72219 * 21 20 19 23 23 C 1.38359 * 119.98719 * 0.54904 * 22 21 20 24 24 Cl 1.73595 * 120.01332 * 179.70474 * 23 22 21 25 25 C 1.38356 * 119.96780 * 359.72062 * 23 22 21 26 26 C 1.38208 * 119.98875 * 0.02562 * 25 23 22 27 27 H 1.08991 * 109.47703 * 176.39128 * 1 2 3 28 28 H 1.09000 * 109.46869 * 296.38712 * 1 2 3 29 29 H 1.09000 * 109.47246 * 56.38117 * 1 2 3 30 30 H 1.09003 * 109.46572 * 240.00462 * 2 1 3 31 31 H 1.08998 * 109.47387 * 120.00498 * 2 1 3 32 32 H 0.97006 * 120.00311 * 180.02562 * 8 7 5 33 33 H 1.00901 * 111.00313 * 21.31131 * 13 3 2 34 34 H 1.09004 * 109.47319 * 304.42630 * 14 13 3 35 35 H 1.09005 * 109.47236 * 64.41920 * 14 13 3 36 36 H 0.97002 * 119.99794 * 0.02562 * 17 15 14 37 37 H 1.09000 * 109.46825 * 300.00294 * 18 17 15 38 38 H 1.09003 * 109.46592 * 59.99974 * 18 17 15 39 39 H 1.09004 * 109.47403 * 300.00373 * 19 18 17 40 40 H 1.09005 * 109.47109 * 59.99637 * 19 18 17 41 41 H 1.08001 * 119.99101 * 359.97438 * 21 20 19 42 42 H 1.07996 * 120.01089 * 180.26858 * 22 21 20 43 43 H 1.08002 * 119.99992 * 179.97438 * 25 23 22 44 44 H 1.08008 * 119.99084 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6126 1.9790 -0.8471 5 6 3.5429 1.4439 -0.1111 6 1 4.1446 1.8112 0.7072 7 6 4.1499 0.9762 -1.2573 8 7 5.4451 0.7484 -1.2695 9 14 3.1325 0.6661 -2.7930 10 1 3.1962 1.8570 -3.6778 11 1 3.6714 -0.5152 -3.5136 12 1 1.7212 0.4100 -2.4085 13 7 1.6408 2.1030 1.2499 14 6 0.4941 2.9947 1.0311 15 6 0.1825 3.7345 2.3065 16 8 0.8503 3.5387 3.2998 17 7 -0.8376 4.6146 2.3431 18 6 -1.1401 5.3343 3.5828 19 6 -2.3345 6.2628 3.3550 20 6 -2.6461 7.0026 4.6303 21 6 -3.5385 6.4663 5.5399 22 6 -3.8203 7.1416 6.7124 23 6 -3.2179 8.3601 6.9705 24 17 -3.5772 9.2125 8.4395 25 6 -2.3292 8.8989 6.0573 26 6 -2.0442 8.2202 4.8876 27 1 -0.3634 -1.0255 -0.0647 28 1 -0.3633 0.4567 0.9206 29 1 -0.3634 0.5690 -0.8558 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.8722 0.4197 -2.0761 33 1 1.4392 1.4246 1.9691 34 1 0.7352 3.7106 0.2454 35 1 -0.3726 2.4052 0.7320 36 1 -1.3714 4.7715 1.5485 37 1 -1.3815 4.6186 4.3687 38 1 -0.2731 5.9235 3.8816 39 1 -2.0936 6.9785 2.5689 40 1 -3.2013 5.6733 3.0562 41 1 -4.0123 5.5174 5.3360 42 1 -4.5141 6.7205 7.4249 43 1 -1.8589 9.8502 6.2581 44 1 -1.3507 8.6410 4.1744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577409511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:46 Heat of formation + Delta-G solvation = -23.496879 kcal Electronic energy + Delta-G solvation = -23771.004982 eV Core-core repulsion = 20134.748989 eV Total energy + Delta-G solvation = -3636.255992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01615 -39.35643 -37.02423 -36.61008 -35.37226 -32.82685 -32.36306 -31.52235 -31.31998 -28.99695 -27.80646 -25.37293 -23.47801 -23.31192 -22.35955 -21.50006 -20.29621 -19.96141 -17.56730 -17.08390 -16.42755 -16.30915 -16.15529 -15.65914 -15.43104 -14.85785 -14.61096 -14.11720 -13.97810 -13.94613 -13.85763 -13.61192 -13.19035 -12.96030 -12.61937 -12.51890 -12.20825 -11.92345 -11.86322 -11.73231 -11.61142 -11.60171 -11.40334 -11.21550 -10.95853 -10.78998 -10.47567 -10.00273 -9.67580 -9.49831 -9.37468 -9.23981 -9.05494 -8.99838 -8.40977 -7.35427 -6.02290 -3.95873 0.65673 0.84114 1.71737 2.92053 3.05597 3.26471 3.27408 3.35291 3.37748 4.26990 4.37009 4.43631 4.45123 4.66549 4.67548 4.86299 5.02890 5.08468 5.10943 5.18253 5.22767 5.32149 5.45796 5.57549 5.62814 5.74785 5.75622 5.76782 5.78276 5.78857 5.80988 5.96261 6.09412 6.33123 6.42861 6.43704 6.51183 6.70902 6.79334 7.16063 7.51720 7.75408 7.91551 8.29376 8.48163 8.74186 9.16506 9.62315 11.11279 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.031360 B = 0.001781 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.652436 B =15718.980811 C =15970.525191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.153 4.153 3 C 0.194 3.806 4 H 0.024 0.976 5 C -0.497 4.497 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.896 5.896 9 Si 0.860 3.140 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.253 1.253 13 N -0.655 5.655 14 C 0.040 3.960 15 C 0.512 3.488 16 O -0.519 6.519 17 N -0.743 5.743 18 C 0.127 3.873 19 C -0.093 4.093 20 C -0.074 4.074 21 C -0.101 4.101 22 C -0.109 4.109 23 C -0.038 4.038 24 Cl -0.073 7.073 25 C -0.108 4.108 26 C -0.100 4.100 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.262 0.738 33 H 0.337 0.663 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.398 0.602 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.714 14.714 11.438 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.192 4.192 3 C 0.086 3.914 4 H 0.042 0.958 5 C -0.535 4.535 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.687 3.313 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.286 5.286 14 C -0.093 4.093 15 C 0.298 3.702 16 O -0.393 6.393 17 N -0.398 5.398 18 C 0.003 3.997 19 C -0.131 4.131 20 C -0.075 4.075 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.064 4.064 24 Cl -0.045 7.045 25 C -0.127 4.127 26 C -0.118 4.118 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.232 0.768 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.600 15.067 12.140 29.751 hybrid contribution -1.464 -0.625 -1.291 2.049 sum -24.063 14.442 10.849 30.088 Atomic orbital electron populations 1.21961 0.98608 1.00424 1.00286 1.22651 0.92681 1.01631 1.02251 1.19627 0.96898 0.88148 0.86774 0.95817 1.21011 0.88870 1.40839 1.02791 0.90009 1.24930 0.94733 0.95063 0.98521 1.69949 1.09899 1.45387 1.28218 0.87273 0.81893 0.77888 0.84201 1.20874 1.21424 1.17771 1.60313 1.33155 1.24657 1.10479 1.21964 0.95183 0.97771 0.94412 1.21037 0.78927 0.79173 0.91040 1.90702 1.48330 1.63930 1.36328 1.46049 1.35056 1.44704 1.13976 1.21213 0.96758 0.94397 0.87371 1.20820 0.98851 0.98440 0.94966 1.19807 0.96534 0.94930 0.96224 1.21063 0.97839 0.99918 0.93116 1.21066 1.00171 0.93527 0.97984 1.20975 1.00745 0.95018 0.89704 1.98378 1.93993 1.77090 1.35000 1.21079 0.97412 1.00735 0.93458 1.21083 0.99380 0.94529 0.96855 0.93789 0.93728 0.93576 0.91870 0.92118 0.92819 0.84477 0.88556 0.93264 0.76817 0.91528 0.91357 0.89845 0.89961 0.84899 0.84869 0.84820 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.86 37.16 0.33 -2.20 16 2 C -0.15 -3.15 4.48 -26.73 -0.12 -3.27 16 3 C 0.19 4.41 1.74 -68.87 -0.12 4.29 16 4 H 0.02 0.54 6.20 -51.93 -0.32 0.22 16 5 C -0.50 -13.99 9.29 -34.44 -0.32 -14.31 16 6 H 0.08 2.61 8.06 -52.48 -0.42 2.18 16 7 C 0.07 1.97 5.37 -17.82 -0.10 1.87 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 9 Si 0.86 20.62 25.74 -169.99 -4.38 16.24 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.56 5.34 56.52 0.30 -5.26 16 13 N -0.65 -13.52 5.61 -109.22 -0.61 -14.14 16 14 C 0.04 0.63 5.60 -4.98 -0.03 0.60 16 15 C 0.51 7.89 7.88 -10.99 -0.09 7.80 16 16 O -0.52 -10.34 16.30 5.56 0.09 -10.25 16 17 N -0.74 -7.79 5.56 -60.29 -0.33 -8.12 16 18 C 0.13 1.19 5.66 -4.04 -0.02 1.17 16 19 C -0.09 -0.56 5.46 -27.89 -0.15 -0.72 16 20 C -0.07 -0.52 5.13 -104.62 -0.54 -1.05 16 21 C -0.10 -0.68 9.70 -39.59 -0.38 -1.07 16 22 C -0.11 -0.78 9.83 -39.55 -0.39 -1.17 16 23 C -0.04 -0.30 6.32 -39.49 -0.25 -0.55 16 24 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.07 16 25 C -0.11 -0.79 9.83 -39.55 -0.39 -1.18 16 26 C -0.10 -0.70 9.70 -39.59 -0.38 -1.08 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.66 6.34 -51.93 -0.33 0.33 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.38 4.80 -51.93 -0.25 1.13 16 31 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.34 6.84 7.74 -39.29 -0.30 6.53 16 34 H 0.10 1.47 7.99 -51.93 -0.42 1.06 16 35 H 0.05 0.67 6.14 -51.93 -0.32 0.35 16 36 H 0.40 2.90 8.47 -40.82 -0.35 2.55 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -33.79 373.62 -9.86 -43.65 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.58 Total: 6.58 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.95 Total: -10.86 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.17 Total: -48.93 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.38 Total: 16.24 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.79 -9.86 -43.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577409511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.157 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds