Wall clock time and date at job start Tue Mar 31 2020 14:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 H 1.09001 * 109.47440 * 55.20128 * 3 2 1 5 5 C 1.50703 * 109.47122 * 175.20210 * 3 2 1 6 6 H 1.07997 * 120.00294 * 119.99980 * 5 3 2 7 7 C 1.37881 * 119.99619 * 299.99961 * 5 3 2 8 8 N 1.31514 * 120.00254 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99804 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47194 * 60.00328 * 9 7 5 11 11 H 1.48498 * 109.46949 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46864 * 299.99965 * 9 7 5 13 13 N 1.46901 * 109.47260 * 295.19954 * 3 2 1 14 14 C 1.46901 * 110.99919 * 154.05462 * 13 3 2 15 15 H 1.09004 * 109.47397 * 35.82424 * 14 13 3 16 16 C 1.53005 * 109.47206 * 275.82747 * 14 13 3 17 17 C 1.50694 * 109.47276 * 155.82857 * 14 13 3 18 18 O 1.21294 * 120.00095 * 359.97438 * 17 14 13 19 19 N 1.34780 * 119.99992 * 179.97438 * 17 14 13 20 20 C 1.39925 * 119.99863 * 184.69283 * 19 17 14 21 21 C 1.38903 * 120.06548 * 330.93848 * 20 19 17 22 22 C 1.38100 * 119.95666 * 179.97438 * 21 20 19 23 23 C 1.38288 * 120.08306 * 359.97438 * 22 21 20 24 24 C 1.38376 * 120.12562 * 359.97438 * 23 22 21 25 25 Cl 1.73602 * 119.97570 * 180.02562 * 24 23 22 26 26 C 1.38250 * 120.04834 * 359.75362 * 24 23 22 27 27 C 1.50697 * 120.04582 * 180.26902 * 26 24 23 28 28 H 1.08991 * 109.47285 * 65.94446 * 1 2 3 29 29 H 1.08997 * 109.46687 * 185.94732 * 1 2 3 30 30 H 1.09003 * 109.46556 * 305.94711 * 1 2 3 31 31 H 1.08999 * 109.47014 * 240.00775 * 2 1 3 32 32 H 1.09000 * 109.47516 * 119.99816 * 2 1 3 33 33 H 0.96997 * 120.00053 * 180.02562 * 8 7 5 34 34 H 1.00902 * 111.00035 * 30.10130 * 13 3 2 35 35 H 1.09000 * 109.47256 * 175.15169 * 16 14 13 36 36 H 1.08997 * 109.46886 * 295.15850 * 16 14 13 37 37 H 1.09002 * 109.46968 * 55.15002 * 16 14 13 38 38 H 0.96994 * 120.00265 * 4.69871 * 19 17 14 39 39 H 1.08006 * 120.02171 * 359.94396 * 21 20 19 40 40 H 1.08001 * 119.95893 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.93210 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47408 * 270.23364 * 27 26 24 43 43 H 1.08998 * 109.47156 * 30.23369 * 27 26 24 44 44 H 1.09007 * 109.47085 * 150.22965 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6082 1.9806 0.8439 5 6 3.5424 1.4442 0.1188 6 1 4.1451 1.8897 -0.6587 7 6 4.1474 0.8770 1.2204 8 7 3.4134 0.3341 2.1670 9 14 6.0096 0.8785 1.3674 10 1 6.5050 2.2784 1.3671 11 1 6.4066 0.2126 2.6340 12 1 6.5974 0.1450 0.2177 13 7 1.6473 2.1008 -1.2532 14 6 1.5472 3.5555 -1.0748 15 1 2.3186 3.8905 -0.3814 16 6 0.1684 3.9067 -0.5122 17 6 1.7360 4.2388 -2.4046 18 8 1.9349 3.5790 -3.4027 19 7 1.6838 5.5832 -2.4848 20 6 1.7608 6.2131 -3.7319 21 6 2.4607 5.6147 -4.7718 22 6 2.5347 6.2381 -6.0018 23 6 1.9125 7.4572 -6.1997 24 6 1.2135 8.0559 -5.1664 25 17 0.4333 9.5860 -5.4192 26 6 1.1312 7.4338 -3.9345 27 6 0.3648 8.0830 -2.8111 28 1 -0.3633 0.4189 -0.9383 29 1 -0.3632 -1.0221 0.1065 30 1 -0.3632 0.6033 0.8320 31 1 1.8934 -0.5137 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.8391 -0.0646 2.9421 34 1 0.7824 1.7194 -1.6063 35 1 0.1242 4.9747 -0.2990 36 1 -0.5984 3.6499 -1.2430 37 1 -0.0029 3.3455 0.4064 38 1 1.5931 6.1141 -1.6781 39 1 2.9471 4.6626 -4.6184 40 1 3.0786 5.7727 -6.8105 41 1 1.9724 7.9428 -7.1625 42 1 1.0330 8.7281 -2.2406 43 1 -0.4501 8.6780 -3.2234 44 1 -0.0430 7.3125 -2.1566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580842067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:57 Heat of formation + Delta-G solvation = -20.202497 kcal Electronic energy + Delta-G solvation = -25299.925886 eV Core-core repulsion = 21663.812749 eV Total energy + Delta-G solvation = -3636.113137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68303 -38.80410 -36.78473 -36.36559 -34.77019 -33.28191 -32.61209 -31.58673 -29.82994 -28.58082 -27.05061 -26.18607 -24.42852 -23.02090 -22.28517 -21.45093 -19.93514 -19.68468 -17.93558 -16.89283 -16.22332 -16.04001 -15.48784 -15.26734 -15.00398 -14.45984 -14.37983 -14.21386 -13.76027 -13.58085 -13.44430 -12.92393 -12.77949 -12.63329 -12.62041 -12.28029 -12.00766 -11.84257 -11.76684 -11.69955 -11.59113 -11.20709 -11.00215 -10.96353 -10.87370 -10.68023 -10.32456 -10.00086 -9.93819 -9.68812 -9.26436 -9.13692 -8.73828 -8.39333 -8.13648 -7.31672 -6.01430 -4.05909 1.07884 1.10461 1.92920 2.84911 3.10222 3.31787 3.36307 3.40591 3.58999 4.41400 4.56767 4.72716 4.83648 4.95224 5.08467 5.25142 5.27430 5.34747 5.37144 5.37888 5.45800 5.52527 5.58776 5.86818 5.88277 6.05197 6.08381 6.12141 6.13080 6.19885 6.27172 6.29015 6.38549 6.42059 6.79871 6.89027 7.00898 7.09441 7.33835 7.48452 7.72731 7.86983 8.16632 8.30964 8.39382 8.66465 9.02309 9.59619 11.03619 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.002862 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.489031 B = 9780.149881 C =10307.815778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.663 5.663 14 C 0.078 3.922 15 H 0.113 0.887 16 C -0.178 4.178 17 C 0.520 3.480 18 O -0.495 6.495 19 N -0.677 5.677 20 C 0.171 3.829 21 C -0.124 4.124 22 C -0.093 4.093 23 C -0.133 4.133 24 C -0.019 4.019 25 Cl -0.073 7.073 26 C -0.115 4.115 27 C -0.118 4.118 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.260 0.740 34 H 0.326 0.674 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.158 0.842 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 15.536 -9.934 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.115 3.885 4 H 0.024 0.976 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.294 5.294 14 C -0.036 4.036 15 H 0.131 0.869 16 C -0.237 4.237 17 C 0.308 3.692 18 O -0.366 6.366 19 N -0.323 5.323 20 C 0.075 3.925 21 C -0.144 4.144 22 C -0.112 4.112 23 C -0.153 4.153 24 C -0.046 4.046 25 Cl -0.045 7.045 26 C -0.119 4.119 27 C -0.175 4.175 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.416 14.994 -10.660 19.484 hybrid contribution 0.063 0.479 0.987 1.099 sum -6.353 15.472 -9.673 19.322 Atomic orbital electron populations 1.21893 0.99565 0.99875 0.99481 1.21776 0.91238 1.00160 1.03308 1.19216 0.95432 0.90028 0.83833 0.97606 1.21196 0.91146 1.36742 1.04532 0.92072 1.24941 0.98152 0.95495 0.95765 1.69853 1.34900 1.39079 1.09708 0.86610 0.85742 0.78159 0.77177 1.20441 1.21449 1.20248 1.60359 1.36730 0.98926 1.33404 1.21363 0.97902 0.92640 0.91744 0.86929 1.22500 0.97211 1.01697 1.02290 1.21453 0.74851 0.80409 0.92533 1.90608 1.44516 1.64149 1.37354 1.43798 1.73553 1.07804 1.07180 1.17523 0.95961 0.91963 0.87048 1.21764 0.98326 1.02005 0.92277 1.21041 0.98755 0.94069 0.97359 1.20964 0.99514 0.96423 0.98363 1.20435 1.00546 0.88795 0.94784 1.98345 1.79794 1.29619 1.96705 1.19399 1.01323 0.95991 0.95158 1.20791 0.99849 1.00697 0.96155 0.94574 0.94286 0.93894 0.93839 0.88103 0.92967 0.85498 0.92538 0.92573 0.90800 0.75387 0.82497 0.84880 0.85210 0.90706 0.90551 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.63 37.16 0.36 -2.43 16 2 C -0.13 -2.88 5.36 -26.73 -0.14 -3.02 16 3 C 0.22 5.19 1.82 -68.86 -0.13 5.06 16 4 H 0.01 0.16 7.04 -51.93 -0.37 -0.21 16 5 C -0.50 -13.25 8.54 -34.44 -0.29 -13.54 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.66 -13.57 5.53 -102.16 -0.57 -14.14 16 14 C 0.08 1.32 2.81 -68.86 -0.19 1.13 16 15 H 0.11 2.02 7.68 -51.93 -0.40 1.62 16 16 C -0.18 -2.39 9.03 37.16 0.34 -2.06 16 17 C 0.52 8.50 7.10 -10.99 -0.08 8.43 16 18 O -0.49 -9.70 13.51 5.55 0.07 -9.63 16 19 N -0.68 -8.68 4.76 -9.86 -0.05 -8.73 16 20 C 0.17 2.25 6.38 -83.70 -0.53 1.72 16 21 C -0.12 -1.72 8.75 -39.39 -0.34 -2.06 16 22 C -0.09 -1.06 10.04 -39.61 -0.40 -1.46 16 23 C -0.13 -1.41 9.83 -39.51 -0.39 -1.80 16 24 C -0.02 -0.21 6.31 -39.53 -0.25 -0.45 16 25 Cl -0.07 -0.72 27.30 -51.86 -1.42 -2.13 16 26 C -0.12 -1.31 5.90 -104.40 -0.62 -1.93 16 27 C -0.12 -1.05 9.05 36.00 0.33 -0.72 16 28 H 0.04 0.61 6.63 -51.93 -0.34 0.26 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 2.58 5.96 -51.93 -0.31 2.27 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.33 6.33 6.30 -39.29 -0.25 6.08 16 35 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.08 7.33 -51.93 -0.38 0.70 16 38 H 0.41 4.09 7.26 -40.82 -0.30 3.79 16 39 H 0.16 2.53 5.76 -52.48 -0.30 2.22 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.65 6.91 -51.93 -0.36 0.29 16 44 H 0.07 0.57 7.08 -51.93 -0.37 0.20 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -29.37 367.81 -9.53 -38.90 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.28 Total: 9.76 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.44 Total: -11.70 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.01 Total: -46.80 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.42 Total: -2.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.37 -9.53 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580842067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.693 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds