Wall clock time and date at job start Tue Mar 31 2020 14:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 H 1.09001 * 109.47440 * 55.20128 * 3 2 1 5 5 C 1.50703 * 109.47122 * 175.20210 * 3 2 1 6 6 H 1.07997 * 120.00294 * 119.99980 * 5 3 2 7 7 C 1.37881 * 119.99619 * 299.99961 * 5 3 2 8 8 N 1.31514 * 120.00254 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99804 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47194 * 60.00328 * 9 7 5 11 11 H 1.48498 * 109.46949 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46864 * 299.99965 * 9 7 5 13 13 N 1.46901 * 109.47260 * 295.19954 * 3 2 1 14 14 C 1.46901 * 110.99919 * 154.05462 * 13 3 2 15 15 H 1.09004 * 109.47397 * 35.82424 * 14 13 3 16 16 C 1.53005 * 109.47206 * 275.82747 * 14 13 3 17 17 C 1.50694 * 109.47276 * 155.82857 * 14 13 3 18 18 O 1.21294 * 120.00095 * 359.97438 * 17 14 13 19 19 N 1.34780 * 119.99992 * 179.97438 * 17 14 13 20 20 C 1.39925 * 119.99863 * 184.69283 * 19 17 14 21 21 C 1.38903 * 120.06548 * 330.93848 * 20 19 17 22 22 C 1.38100 * 119.95666 * 179.97438 * 21 20 19 23 23 C 1.38288 * 120.08306 * 359.97438 * 22 21 20 24 24 C 1.38376 * 120.12562 * 359.97438 * 23 22 21 25 25 Cl 1.73602 * 119.97570 * 180.02562 * 24 23 22 26 26 C 1.38250 * 120.04834 * 359.75362 * 24 23 22 27 27 C 1.50697 * 120.04582 * 180.26902 * 26 24 23 28 28 H 1.08991 * 109.47285 * 65.94446 * 1 2 3 29 29 H 1.08997 * 109.46687 * 185.94732 * 1 2 3 30 30 H 1.09003 * 109.46556 * 305.94711 * 1 2 3 31 31 H 1.08999 * 109.47014 * 240.00775 * 2 1 3 32 32 H 1.09000 * 109.47516 * 119.99816 * 2 1 3 33 33 H 0.96997 * 120.00053 * 180.02562 * 8 7 5 34 34 H 1.00902 * 111.00035 * 30.10130 * 13 3 2 35 35 H 1.09000 * 109.47256 * 175.15169 * 16 14 13 36 36 H 1.08997 * 109.46886 * 295.15850 * 16 14 13 37 37 H 1.09002 * 109.46968 * 55.15002 * 16 14 13 38 38 H 0.96994 * 120.00265 * 4.69871 * 19 17 14 39 39 H 1.08006 * 120.02171 * 359.94396 * 21 20 19 40 40 H 1.08001 * 119.95893 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.93210 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47408 * 270.23364 * 27 26 24 43 43 H 1.08998 * 109.47156 * 30.23369 * 27 26 24 44 44 H 1.09007 * 109.47085 * 150.22965 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6082 1.9806 0.8439 5 6 3.5424 1.4442 0.1188 6 1 4.1451 1.8897 -0.6587 7 6 4.1474 0.8770 1.2204 8 7 3.4134 0.3341 2.1670 9 14 6.0096 0.8785 1.3674 10 1 6.5050 2.2784 1.3671 11 1 6.4066 0.2126 2.6340 12 1 6.5974 0.1450 0.2177 13 7 1.6473 2.1008 -1.2532 14 6 1.5472 3.5555 -1.0748 15 1 2.3186 3.8905 -0.3814 16 6 0.1684 3.9067 -0.5122 17 6 1.7360 4.2388 -2.4046 18 8 1.9349 3.5790 -3.4027 19 7 1.6838 5.5832 -2.4848 20 6 1.7608 6.2131 -3.7319 21 6 2.4607 5.6147 -4.7718 22 6 2.5347 6.2381 -6.0018 23 6 1.9125 7.4572 -6.1997 24 6 1.2135 8.0559 -5.1664 25 17 0.4333 9.5860 -5.4192 26 6 1.1312 7.4338 -3.9345 27 6 0.3648 8.0830 -2.8111 28 1 -0.3633 0.4189 -0.9383 29 1 -0.3632 -1.0221 0.1065 30 1 -0.3632 0.6033 0.8320 31 1 1.8934 -0.5137 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.8391 -0.0646 2.9421 34 1 0.7824 1.7194 -1.6063 35 1 0.1242 4.9747 -0.2990 36 1 -0.5984 3.6499 -1.2430 37 1 -0.0029 3.3455 0.4064 38 1 1.5931 6.1141 -1.6781 39 1 2.9471 4.6626 -4.6184 40 1 3.0786 5.7727 -6.8105 41 1 1.9724 7.9428 -7.1625 42 1 1.0330 8.7281 -2.2406 43 1 -0.4501 8.6780 -3.2234 44 1 -0.0430 7.3125 -2.1566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580842067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:56 Heat of formation + Delta-G solvation = -37.123617 kcal Electronic energy + Delta-G solvation = -25300.659641 eV Core-core repulsion = 21663.812749 eV Total energy + Delta-G solvation = -3636.846892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79378 -39.91203 -38.18967 -37.42192 -35.87813 -34.96509 -33.53998 -33.34527 -30.96802 -29.94691 -28.05827 -27.81638 -25.67803 -24.62245 -23.47249 -22.38970 -21.49887 -21.14246 -18.96528 -18.35494 -18.01351 -17.00485 -16.80574 -16.54907 -16.40934 -15.95759 -15.52601 -15.34187 -15.03023 -14.97760 -14.41610 -14.33272 -14.27689 -13.64489 -13.55222 -13.43564 -13.34699 -13.15035 -13.00264 -12.83195 -12.76761 -12.57206 -12.55765 -12.46161 -12.31765 -11.96621 -11.76529 -11.67763 -11.49408 -11.34880 -11.03717 -10.58477 -10.41917 -9.62784 -9.12624 -8.97232 -8.06040 -6.17472 0.14713 0.18109 1.07545 1.41382 1.43609 1.50775 1.61763 1.98673 2.44455 2.64979 3.19038 3.58990 3.70137 3.78993 3.92947 4.05380 4.14084 4.26643 4.38113 4.46309 4.52407 4.58870 4.61267 4.69721 4.71151 4.73373 4.76157 4.86833 5.07573 5.15155 5.20262 5.21608 5.24531 5.26801 5.33885 5.37813 5.45937 5.59570 5.75450 5.88769 5.90036 6.29019 6.38829 6.55064 6.93751 6.95562 7.16519 7.51514 8.96151 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.002862 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.489031 B = 9780.149881 C =10307.815778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.232 3.768 4 H -0.010 1.010 5 C -0.515 4.515 6 H 0.042 0.958 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.676 5.676 14 C 0.077 3.923 15 H 0.098 0.902 16 C -0.167 4.167 17 C 0.523 3.477 18 O -0.534 6.534 19 N -0.660 5.660 20 C 0.150 3.850 21 C -0.146 4.146 22 C -0.095 4.095 23 C -0.126 4.126 24 C -0.027 4.027 25 Cl -0.058 7.058 26 C -0.110 4.110 27 C -0.120 4.120 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.261 0.739 34 H 0.332 0.668 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.424 0.576 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 17.648 -10.463 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.125 3.875 4 H 0.008 0.992 5 C -0.554 4.554 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.308 5.308 14 C -0.038 4.038 15 H 0.116 0.884 16 C -0.226 4.226 17 C 0.312 3.688 18 O -0.409 6.409 19 N -0.306 5.306 20 C 0.055 3.945 21 C -0.167 4.167 22 C -0.114 4.114 23 C -0.146 4.146 24 C -0.055 4.055 25 Cl -0.029 7.029 26 C -0.114 4.114 27 C -0.176 4.176 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.263 0.737 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.445 17.161 -11.182 21.794 hybrid contribution 0.378 -0.069 1.064 1.132 sum -7.067 17.092 -10.118 21.082 Atomic orbital electron populations 1.21745 0.96067 1.01194 1.00565 1.21618 0.94393 0.99164 1.01019 1.18927 0.93627 0.90506 0.84479 0.99242 1.21431 0.93003 1.36779 1.04166 0.93953 1.25557 1.01777 0.95274 0.95577 1.69958 1.36137 1.39411 1.09931 0.85766 0.81433 0.78271 0.77035 1.19830 1.20732 1.20615 1.60167 1.37479 1.01139 1.32020 1.21373 0.99679 0.90604 0.92112 0.88413 1.22385 0.94761 1.03875 1.01556 1.21250 0.74545 0.81438 0.91610 1.90606 1.46557 1.65321 1.38369 1.43472 1.72493 1.06615 1.08062 1.17615 0.97213 0.92912 0.86765 1.21675 0.99501 1.01554 0.93937 1.21231 0.98849 0.94418 0.96908 1.21252 0.98229 0.95790 0.99291 1.20626 1.00544 0.89463 0.94834 1.98352 1.79450 1.28469 1.96630 1.19611 1.00574 0.95044 0.96140 1.20887 1.00024 1.01108 0.95587 0.92777 0.92682 0.93605 0.95298 0.91075 0.92971 0.84871 0.88962 0.91764 0.91923 0.73704 0.85357 0.83091 0.82814 0.89187 0.89948 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.63 71.98 0.69 -4.31 16 2 C -0.12 -5.72 5.36 30.60 0.16 -5.56 16 3 C 0.23 11.15 1.82 44.17 0.08 11.23 16 4 H -0.01 -0.50 7.04 -2.39 -0.02 -0.52 16 5 C -0.51 -28.25 8.54 25.60 0.22 -28.03 16 6 H 0.04 2.43 7.81 -2.91 -0.02 2.40 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -51.00 11.29 21.45 0.24 -50.76 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.68 -28.22 5.53 -477.14 -2.64 -30.86 16 14 C 0.08 2.60 2.81 44.17 0.12 2.72 16 15 H 0.10 3.59 7.68 -2.38 -0.02 3.57 16 16 C -0.17 -4.24 9.03 71.98 0.65 -3.59 16 17 C 0.52 17.25 7.10 87.65 0.62 17.87 16 18 O -0.53 -21.60 13.51 -3.07 -0.04 -21.65 16 19 N -0.66 -16.42 4.76 -303.50 -1.44 -17.86 16 20 C 0.15 3.84 6.38 38.15 0.24 4.09 16 21 C -0.15 -4.11 8.75 22.40 0.20 -3.91 16 22 C -0.10 -2.09 10.04 22.25 0.22 -1.87 16 23 C -0.13 -2.41 9.83 22.31 0.22 -2.19 16 24 C -0.03 -0.55 6.31 22.31 0.14 -0.41 16 25 Cl -0.06 -0.97 27.30 -2.72 -0.07 -1.05 16 26 C -0.11 -2.29 5.90 -19.72 -0.12 -2.41 16 27 C -0.12 -1.78 9.05 71.23 0.64 -1.13 16 28 H 0.05 1.75 6.63 -2.39 -0.02 1.73 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.07 3.74 5.96 -2.39 -0.01 3.72 16 33 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.33 12.91 6.30 -89.69 -0.57 12.35 16 35 H 0.09 1.66 7.82 -2.39 -0.02 1.64 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.76 7.33 -2.39 -0.02 1.74 16 38 H 0.42 7.75 7.26 -92.71 -0.67 7.07 16 39 H 0.13 4.38 5.76 -2.91 -0.02 4.36 16 40 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.15 6.91 -2.39 -0.02 1.13 16 44 H 0.08 1.03 7.08 -2.38 -0.02 1.01 16 Total: -1.00 -65.22 367.81 2.41 -62.80 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.21 Total: 29.64 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 4.55 Total: -16.13 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.84 Total: -99.48 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.65 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.05 kcal Total: -65.22 2.41 -62.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580842067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.678 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds