Wall clock time and date at job start Tue Mar 31 2020 14:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 H 1.09004 * 109.46913 * 180.94075 * 3 2 1 5 5 C 1.50699 * 109.47722 * 300.94413 * 3 2 1 6 6 H 1.07999 * 120.00041 * 119.99599 * 5 3 2 7 7 C 1.37873 * 119.99621 * 300.00623 * 5 3 2 8 8 N 1.31509 * 120.00375 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99946 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46706 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47506 * 119.99527 * 9 7 5 12 12 H 1.48509 * 109.46732 * 239.99790 * 9 7 5 13 13 N 1.46901 * 109.47412 * 60.94800 * 3 2 1 14 14 C 1.46899 * 111.00357 * 89.26253 * 13 3 2 15 15 H 1.09001 * 109.47283 * 320.84302 * 14 13 3 16 16 C 1.53011 * 109.46569 * 80.83913 * 14 13 3 17 17 C 1.50703 * 109.47264 * 200.83485 * 14 13 3 18 18 O 1.21282 * 120.00211 * 0.02562 * 17 14 13 19 19 N 1.34778 * 119.99549 * 180.02562 * 17 14 13 20 20 C 1.39921 * 119.99615 * 184.62675 * 19 17 14 21 21 C 1.38905 * 120.06722 * 333.73420 * 20 19 17 22 22 C 1.38094 * 119.96032 * 179.97438 * 21 20 19 23 23 C 1.38283 * 120.08103 * 359.97438 * 22 21 20 24 24 C 1.38381 * 120.13020 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 119.97917 * 180.02562 * 24 23 22 26 26 C 1.38256 * 120.04190 * 359.74132 * 24 23 22 27 27 C 1.50699 * 120.04027 * 180.25004 * 26 24 23 28 28 H 1.09001 * 109.46496 * 175.17865 * 1 2 3 29 29 H 1.08998 * 109.47006 * 295.18398 * 1 2 3 30 30 H 1.09006 * 109.46808 * 55.18401 * 1 2 3 31 31 H 1.09004 * 109.47047 * 119.99851 * 2 1 3 32 32 H 1.09000 * 109.47376 * 240.00507 * 2 1 3 33 33 H 0.97003 * 120.00352 * 180.02562 * 8 7 5 34 34 H 1.00898 * 111.00253 * 213.22502 * 13 3 2 35 35 H 1.08994 * 109.46862 * 299.99785 * 16 14 13 36 36 H 1.09001 * 109.47001 * 60.00216 * 16 14 13 37 37 H 1.08996 * 109.46638 * 179.97438 * 16 14 13 38 38 H 0.96996 * 120.00434 * 4.62054 * 19 17 14 39 39 H 1.08007 * 120.01646 * 359.95532 * 21 20 19 40 40 H 1.07991 * 119.95852 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.93645 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47792 * 270.25762 * 27 26 24 43 43 H 1.09007 * 109.46985 * 30.26442 * 27 26 24 44 44 H 1.09007 * 109.46482 * 150.25840 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0169 5 6 1.5187 2.1597 -1.2185 6 1 0.8994 3.0372 -1.1049 7 6 1.8322 1.6956 -2.4783 8 7 2.5866 0.6273 -2.6167 9 14 1.1854 2.5842 -3.9889 10 1 0.3660 3.7481 -3.5654 11 1 2.3274 3.0557 -4.8127 12 1 0.3481 1.6547 -4.7892 13 7 1.5691 2.1284 1.2107 14 6 2.5223 1.9600 2.3157 15 1 2.9204 0.9454 2.3007 16 6 3.6692 2.9603 2.1567 17 6 1.8203 2.2050 3.6265 18 8 0.6418 2.4912 3.6391 19 7 2.5021 2.1060 4.7849 20 6 1.8306 2.2377 6.0053 21 6 0.6573 2.9776 6.0778 22 6 -0.0039 3.1057 7.2833 23 6 0.5003 2.4978 8.4184 24 6 1.6683 1.7589 8.3501 25 17 2.2975 0.9969 9.7773 26 6 2.3314 1.6224 7.1446 27 6 3.6004 0.8131 7.0691 28 1 -0.3632 -1.0241 -0.0864 29 1 -0.3633 0.4373 0.9300 30 1 -0.3633 0.5868 -0.8438 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 2.8075 0.3009 -3.5030 34 1 1.3957 3.1055 1.0285 35 1 4.1769 2.7831 1.2086 36 1 3.2711 3.9749 2.1717 37 1 4.3762 2.8356 2.9768 38 1 3.4583 1.9433 4.7725 39 1 0.2626 3.4527 5.1918 40 1 -0.9164 3.6806 7.3395 41 1 -0.0185 2.5998 9.3601 42 1 4.4561 1.4600 7.2624 43 1 3.5696 0.0186 7.8149 44 1 3.6933 0.3751 6.0752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580842069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:03 Heat of formation + Delta-G solvation = -19.196799 kcal Electronic energy + Delta-G solvation = -25275.925734 eV Core-core repulsion = 21639.856207 eV Total energy + Delta-G solvation = -3636.069527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76297 -38.85773 -36.78135 -36.33801 -34.84884 -33.41962 -32.64696 -31.21972 -29.86325 -28.49234 -27.07645 -25.97055 -24.35205 -23.27439 -22.57324 -21.53807 -20.10940 -18.98008 -18.05314 -17.23556 -16.28926 -16.01914 -15.64323 -15.06115 -14.83843 -14.59362 -14.32235 -14.12793 -13.78282 -13.52659 -13.47048 -12.94847 -12.74919 -12.65232 -12.55462 -12.14656 -11.95111 -11.90606 -11.78379 -11.77968 -11.66642 -11.11042 -10.99043 -10.97066 -10.76650 -10.42706 -10.38651 -10.12048 -9.87506 -9.43043 -9.28981 -8.84183 -8.77155 -8.52220 -8.17042 -7.32905 -6.07576 -4.12701 1.04468 1.06916 1.90562 2.76000 3.02671 3.25703 3.34639 3.38690 3.55714 4.36453 4.53253 4.69889 4.76342 4.92459 5.07120 5.22275 5.25005 5.30382 5.34875 5.35395 5.41941 5.46761 5.52853 5.83882 5.86260 6.00002 6.02838 6.14524 6.22902 6.30911 6.37620 6.52912 6.67030 6.84534 6.85361 7.17202 7.24639 7.38467 7.44990 7.72228 7.74713 7.79168 8.18071 8.27015 8.29599 8.57093 8.95844 9.52354 10.98378 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.002550 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.305585 B =10977.327912 C =11196.349647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.006 0.994 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.662 5.662 14 C 0.073 3.927 15 H 0.101 0.899 16 C -0.178 4.178 17 C 0.519 3.481 18 O -0.493 6.493 19 N -0.676 5.676 20 C 0.171 3.829 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.134 4.134 24 C -0.017 4.017 25 Cl -0.073 7.073 26 C -0.116 4.116 27 C -0.119 4.119 28 H 0.013 0.987 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.007 0.993 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.340 0.660 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.410 0.590 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 2.493 20.729 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.024 0.976 5 C -0.552 4.552 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.293 5.293 14 C -0.042 4.042 15 H 0.119 0.881 16 C -0.238 4.238 17 C 0.307 3.693 18 O -0.364 6.364 19 N -0.322 5.322 20 C 0.074 3.926 21 C -0.149 4.149 22 C -0.112 4.112 23 C -0.153 4.153 24 C -0.045 4.045 25 Cl -0.044 7.044 26 C -0.120 4.120 27 C -0.176 4.176 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.246 0.754 39 H 0.178 0.822 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.854 1.965 20.771 20.946 hybrid contribution 0.942 0.724 -0.934 1.510 sum 2.795 2.689 19.837 20.213 Atomic orbital electron populations 1.21461 0.97359 0.97482 1.01559 1.21457 0.95301 0.98111 0.99242 1.19201 0.93380 0.91505 0.84839 0.97595 1.21208 1.31724 1.12031 0.90212 0.92144 1.24861 0.94995 0.94969 0.98887 1.69882 1.36994 1.22873 1.22924 0.86523 0.78674 0.79794 0.82934 1.19727 1.21160 1.20973 1.60444 1.43157 1.18828 1.06885 1.21443 0.91899 1.00730 0.90100 0.88082 1.22505 0.98434 0.99710 1.03114 1.21416 0.87505 0.75449 0.84961 1.90588 1.15780 1.43601 1.86459 1.43799 1.12226 1.72169 1.03986 1.17541 0.94250 0.95924 0.84839 1.21854 0.94946 0.98326 0.99728 1.21044 0.99761 0.98879 0.91488 1.20971 0.95347 0.99300 0.99709 1.20440 0.96459 1.00324 0.87234 1.98347 1.86966 1.80639 1.38412 1.19389 0.99862 1.01319 0.91385 1.20797 0.93836 0.99466 1.03460 0.96832 0.93746 0.92420 0.97385 0.89478 0.92961 0.84154 0.90350 0.92171 0.92937 0.75389 0.82204 0.84890 0.85200 0.90737 0.90454 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.53 37.16 0.35 -2.41 16 2 C -0.10 -2.41 5.61 -26.73 -0.15 -2.56 16 3 C 0.22 5.07 2.09 -68.87 -0.14 4.93 16 4 H 0.01 0.16 6.82 -51.93 -0.35 -0.20 16 5 C -0.51 -13.20 7.20 -34.44 -0.25 -13.45 16 6 H 0.06 1.57 7.55 -52.49 -0.40 1.17 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.17 11.33 55.43 0.63 -23.54 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.66 -13.30 4.91 -102.16 -0.50 -13.80 16 14 C 0.07 1.16 2.84 -68.86 -0.20 0.97 16 15 H 0.10 1.61 7.45 -51.93 -0.39 1.22 16 16 C -0.18 -2.39 9.04 37.16 0.34 -2.05 16 17 C 0.52 7.99 7.11 -10.98 -0.08 7.91 16 18 O -0.49 -9.19 13.37 5.56 0.07 -9.11 16 19 N -0.68 -8.12 4.86 -9.86 -0.05 -8.16 16 20 C 0.17 2.14 6.43 -83.70 -0.54 1.61 16 21 C -0.13 -1.69 8.79 -39.39 -0.35 -2.03 16 22 C -0.09 -1.01 10.04 -39.62 -0.40 -1.41 16 23 C -0.13 -1.37 9.83 -39.51 -0.39 -1.76 16 24 C -0.02 -0.19 6.31 -39.52 -0.25 -0.44 16 25 Cl -0.07 -0.69 27.30 -51.86 -1.42 -2.11 16 26 C -0.12 -1.28 5.90 -104.40 -0.62 -1.90 16 27 C -0.12 -1.03 9.05 36.01 0.33 -0.70 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 1.00 7.78 -51.93 -0.40 0.60 16 30 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 31 H 0.01 0.17 7.69 -51.93 -0.40 -0.23 16 32 H 0.09 2.27 6.10 -51.93 -0.32 1.96 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.34 6.92 7.94 -39.29 -0.31 6.61 16 35 H 0.08 1.19 7.18 -51.93 -0.37 0.81 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.53 7.46 -51.93 -0.39 0.14 16 38 H 0.41 3.74 6.77 -40.82 -0.28 3.46 16 39 H 0.16 2.39 5.55 -52.48 -0.29 2.09 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.65 6.91 -51.93 -0.36 0.30 16 44 H 0.07 0.57 7.02 -51.92 -0.36 0.20 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -28.73 365.78 -9.44 -38.17 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.23 Total: 9.10 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.43 Total: -11.69 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.08 Total: -45.51 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.42 Total: -2.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.73 -9.44 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580842069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.970 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds