Wall clock time and date at job start Tue Mar 31 2020 14:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 H 1.09004 * 109.46913 * 180.94075 * 3 2 1 5 5 C 1.50699 * 109.47722 * 300.94413 * 3 2 1 6 6 H 1.07999 * 120.00041 * 119.99599 * 5 3 2 7 7 C 1.37873 * 119.99621 * 300.00623 * 5 3 2 8 8 N 1.31509 * 120.00375 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99946 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46706 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47506 * 119.99527 * 9 7 5 12 12 H 1.48509 * 109.46732 * 239.99790 * 9 7 5 13 13 N 1.46901 * 109.47412 * 60.94800 * 3 2 1 14 14 C 1.46899 * 111.00357 * 89.26253 * 13 3 2 15 15 H 1.09001 * 109.47283 * 320.84302 * 14 13 3 16 16 C 1.53011 * 109.46569 * 80.83913 * 14 13 3 17 17 C 1.50703 * 109.47264 * 200.83485 * 14 13 3 18 18 O 1.21282 * 120.00211 * 0.02562 * 17 14 13 19 19 N 1.34778 * 119.99549 * 180.02562 * 17 14 13 20 20 C 1.39921 * 119.99615 * 184.62675 * 19 17 14 21 21 C 1.38905 * 120.06722 * 333.73420 * 20 19 17 22 22 C 1.38094 * 119.96032 * 179.97438 * 21 20 19 23 23 C 1.38283 * 120.08103 * 359.97438 * 22 21 20 24 24 C 1.38381 * 120.13020 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 119.97917 * 180.02562 * 24 23 22 26 26 C 1.38256 * 120.04190 * 359.74132 * 24 23 22 27 27 C 1.50699 * 120.04027 * 180.25004 * 26 24 23 28 28 H 1.09001 * 109.46496 * 175.17865 * 1 2 3 29 29 H 1.08998 * 109.47006 * 295.18398 * 1 2 3 30 30 H 1.09006 * 109.46808 * 55.18401 * 1 2 3 31 31 H 1.09004 * 109.47047 * 119.99851 * 2 1 3 32 32 H 1.09000 * 109.47376 * 240.00507 * 2 1 3 33 33 H 0.97003 * 120.00352 * 180.02562 * 8 7 5 34 34 H 1.00898 * 111.00253 * 213.22502 * 13 3 2 35 35 H 1.08994 * 109.46862 * 299.99785 * 16 14 13 36 36 H 1.09001 * 109.47001 * 60.00216 * 16 14 13 37 37 H 1.08996 * 109.46638 * 179.97438 * 16 14 13 38 38 H 0.96996 * 120.00434 * 4.62054 * 19 17 14 39 39 H 1.08007 * 120.01646 * 359.95532 * 21 20 19 40 40 H 1.07991 * 119.95852 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.93645 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47792 * 270.25762 * 27 26 24 43 43 H 1.09007 * 109.46985 * 30.26442 * 27 26 24 44 44 H 1.09007 * 109.46482 * 150.25840 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 -0.0169 5 6 1.5187 2.1597 -1.2185 6 1 0.8994 3.0372 -1.1049 7 6 1.8322 1.6956 -2.4783 8 7 2.5866 0.6273 -2.6167 9 14 1.1854 2.5842 -3.9889 10 1 0.3660 3.7481 -3.5654 11 1 2.3274 3.0557 -4.8127 12 1 0.3481 1.6547 -4.7892 13 7 1.5691 2.1284 1.2107 14 6 2.5223 1.9600 2.3157 15 1 2.9204 0.9454 2.3007 16 6 3.6692 2.9603 2.1567 17 6 1.8203 2.2050 3.6265 18 8 0.6418 2.4912 3.6391 19 7 2.5021 2.1060 4.7849 20 6 1.8306 2.2377 6.0053 21 6 0.6573 2.9776 6.0778 22 6 -0.0039 3.1057 7.2833 23 6 0.5003 2.4978 8.4184 24 6 1.6683 1.7589 8.3501 25 17 2.2975 0.9969 9.7773 26 6 2.3314 1.6224 7.1446 27 6 3.6004 0.8131 7.0691 28 1 -0.3632 -1.0241 -0.0864 29 1 -0.3633 0.4373 0.9300 30 1 -0.3633 0.5868 -0.8438 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 2.8075 0.3009 -3.5030 34 1 1.3957 3.1055 1.0285 35 1 4.1769 2.7831 1.2086 36 1 3.2711 3.9749 2.1717 37 1 4.3762 2.8356 2.9768 38 1 3.4583 1.9433 4.7725 39 1 0.2626 3.4527 5.1918 40 1 -0.9164 3.6806 7.3395 41 1 -0.0185 2.5998 9.3601 42 1 4.4561 1.4600 7.2624 43 1 3.5696 0.0186 7.8149 44 1 3.6933 0.3751 6.0752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580842069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:02 Heat of formation + Delta-G solvation = -35.134035 kcal Electronic energy + Delta-G solvation = -25276.616824 eV Core-core repulsion = 21639.856207 eV Total energy + Delta-G solvation = -3636.760617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81935 -39.90991 -38.13766 -37.41498 -35.89672 -35.08302 -33.50539 -33.05096 -31.00960 -29.87910 -27.87835 -27.74010 -25.63724 -25.03207 -23.66029 -22.43228 -21.39436 -20.66116 -19.18304 -18.54830 -17.77367 -17.00496 -16.93104 -16.53521 -16.09753 -15.79363 -15.50761 -15.35824 -15.04746 -14.89289 -14.66750 -14.33641 -13.89550 -13.85152 -13.56443 -13.55430 -13.35441 -13.25213 -12.84407 -12.81034 -12.70423 -12.57160 -12.47689 -12.45051 -12.25119 -11.91952 -11.76166 -11.70205 -11.38068 -11.33667 -10.79004 -10.60170 -10.47724 -9.61921 -9.11190 -8.94814 -8.08666 -6.18884 0.15873 0.18820 1.08264 1.40809 1.45106 1.54464 1.59930 1.97102 2.44467 2.66675 3.20868 3.59165 3.67948 3.79006 3.93128 4.07050 4.13697 4.18602 4.39006 4.46142 4.61451 4.63881 4.70350 4.73105 4.73370 4.78768 4.81084 4.96318 5.15187 5.18921 5.21414 5.24833 5.33145 5.34012 5.41591 5.46920 5.56412 5.73494 5.82483 5.88612 5.91296 6.28366 6.36437 6.49745 6.79117 7.02033 7.15490 7.49300 8.96382 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.002550 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.305585 B =10977.327912 C =11196.349647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C 0.228 3.772 4 H -0.012 1.012 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.669 5.669 14 C 0.072 3.928 15 H 0.103 0.897 16 C -0.168 4.168 17 C 0.525 3.475 18 O -0.530 6.530 19 N -0.658 5.658 20 C 0.151 3.849 21 C -0.148 4.148 22 C -0.095 4.095 23 C -0.129 4.129 24 C -0.028 4.028 25 Cl -0.060 7.060 26 C -0.114 4.114 27 C -0.120 4.120 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.021 0.979 32 H 0.061 0.939 33 H 0.261 0.739 34 H 0.336 0.664 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.424 0.576 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 2.572 22.602 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C 0.120 3.880 4 H 0.006 0.994 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.300 5.300 14 C -0.042 4.042 15 H 0.121 0.879 16 C -0.228 4.228 17 C 0.313 3.687 18 O -0.405 6.405 19 N -0.304 5.304 20 C 0.055 3.945 21 C -0.169 4.169 22 C -0.114 4.114 23 C -0.148 4.148 24 C -0.055 4.055 25 Cl -0.031 7.031 26 C -0.117 4.117 27 C -0.176 4.176 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.264 0.736 39 H 0.156 0.844 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.440 2.045 22.686 22.908 hybrid contribution 0.780 0.686 -1.359 1.710 sum 3.220 2.731 21.327 21.741 Atomic orbital electron populations 1.21314 0.96738 0.98093 1.00468 1.21360 0.95734 0.98141 0.98578 1.18928 0.92025 0.91508 0.85552 0.99449 1.21450 1.31322 1.11867 0.91424 0.92941 1.25499 0.95319 0.95630 1.01251 1.69988 1.37940 1.23891 1.23349 0.85658 0.78119 0.78738 0.80009 1.19532 1.20699 1.21054 1.60286 1.44821 1.18302 1.06608 1.21482 0.91959 1.01658 0.89126 0.87886 1.22384 0.97976 0.98721 1.03674 1.21151 0.86937 0.75164 0.85493 1.90592 1.17301 1.45610 1.87007 1.43467 1.12757 1.71131 1.03074 1.17635 0.94640 0.97051 0.85192 1.21805 0.95864 0.99297 0.99895 1.21253 1.00258 0.98955 0.90904 1.21257 0.95062 0.98171 1.00312 1.20631 0.96710 1.00430 0.87711 1.98353 1.86810 1.80378 1.37534 1.19599 1.00486 1.00775 0.90841 1.20882 0.93262 0.99564 1.03942 0.95154 0.93845 0.94494 0.96035 0.92010 0.92999 0.84618 0.92213 0.92213 0.88993 0.73649 0.84440 0.83021 0.82968 0.88935 0.90141 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.96 9.53 71.98 0.69 -4.27 16 2 C -0.10 -4.72 5.61 30.60 0.17 -4.54 16 3 C 0.23 10.77 2.09 44.17 0.09 10.86 16 4 H -0.01 -0.61 6.82 -2.38 -0.02 -0.62 16 5 C -0.52 -27.28 7.20 25.60 0.18 -27.09 16 6 H 0.05 2.77 7.55 -2.91 -0.02 2.75 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -50.28 11.33 21.44 0.24 -50.03 16 9 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.67 -27.22 4.91 -477.13 -2.34 -29.56 16 14 C 0.07 2.26 2.84 44.17 0.13 2.39 16 15 H 0.10 3.20 7.45 -2.39 -0.02 3.18 16 16 C -0.17 -4.34 9.04 71.99 0.65 -3.68 16 17 C 0.52 15.93 7.11 87.66 0.62 16.55 16 18 O -0.53 -20.07 13.37 -3.04 -0.04 -20.11 16 19 N -0.66 -14.92 4.86 -303.51 -1.48 -16.40 16 20 C 0.15 3.61 6.43 38.15 0.25 3.86 16 21 C -0.15 -3.86 8.79 22.40 0.20 -3.66 16 22 C -0.10 -1.95 10.04 22.25 0.22 -1.73 16 23 C -0.13 -2.36 9.83 22.31 0.22 -2.14 16 24 C -0.03 -0.54 6.31 22.31 0.14 -0.40 16 25 Cl -0.06 -1.00 27.30 -2.72 -0.07 -1.07 16 26 C -0.11 -2.29 5.90 -19.72 -0.12 -2.41 16 27 C -0.12 -1.76 9.05 71.24 0.64 -1.12 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.96 7.78 -2.39 -0.02 1.94 16 30 H 0.04 1.80 7.02 -2.38 -0.02 1.79 16 31 H 0.02 0.93 7.69 -2.39 -0.02 0.91 16 32 H 0.06 3.27 6.10 -2.39 -0.01 3.25 16 33 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.34 13.98 7.94 -89.70 -0.71 13.26 16 35 H 0.06 1.79 7.18 -2.39 -0.02 1.77 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.61 7.46 -2.39 -0.02 1.60 16 38 H 0.42 6.77 6.77 -92.71 -0.63 6.14 16 39 H 0.14 4.24 5.55 -2.91 -0.02 4.22 16 40 H 0.15 2.41 8.06 -2.92 -0.02 2.39 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.15 6.91 -2.38 -0.02 1.13 16 44 H 0.07 1.03 7.02 -2.38 -0.02 1.01 16 Total: -1.00 -62.32 365.78 2.57 -59.75 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.30 Total: 28.45 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.54 Total: -15.74 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -3.57 Total: -95.99 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.11 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.07 Total: -1.07 kcal Total: -62.32 2.57 -59.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580842069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.614 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds