Wall clock time and date at job start Tue Mar 31 2020 14:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46911 * 2 1 4 4 N 1.46501 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00329 * 89.99498 * 4 3 2 6 6 O 1.21580 * 120.00163 * 174.12416 * 5 4 3 7 7 N 1.34776 * 119.99959 * 354.13599 * 5 4 3 8 8 C 1.39280 * 120.00086 * 185.46440 * 7 5 4 9 9 C 1.39468 * 119.83580 * 317.47540 * 8 7 5 10 10 C 1.36368 * 120.17627 * 179.71767 * 9 8 7 11 11 C 1.40893 * 119.84969 * 0.55764 * 10 9 8 12 12 C 1.41153 * 120.16063 * 179.74180 * 11 10 9 13 13 H 1.08007 * 119.99815 * 25.66102 * 12 11 10 14 14 C 1.39885 * 120.00043 * 205.66119 * 12 11 10 15 15 N 1.30884 * 120.00186 * 12.11686 * 14 12 11 16 16 Si 1.86799 * 119.99903 * 192.11185 * 14 12 11 17 17 H 1.48506 * 109.47316 * 90.00173 * 16 14 12 18 18 H 1.48497 * 109.47287 * 210.00196 * 16 14 12 19 19 H 1.48505 * 109.47344 * 330.00246 * 16 14 12 20 20 C 1.40844 * 119.68287 * 359.71503 * 11 10 9 21 21 C 1.36471 * 119.81770 * 0.02562 * 20 11 10 22 22 Cl 1.73601 * 119.92751 * 179.97438 * 21 20 11 23 23 C 1.46504 * 119.99790 * 269.72653 * 4 3 2 24 24 C 1.53000 * 109.47455 * 121.93276 * 23 4 3 25 25 C 1.52998 * 109.46831 * 241.93402 * 23 4 3 26 26 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46956 * 299.99793 * 1 2 3 28 28 H 1.09000 * 109.47444 * 60.00103 * 1 2 3 29 29 H 1.09000 * 109.47297 * 240.00459 * 2 1 3 30 30 H 1.09000 * 109.47444 * 119.99897 * 2 1 3 31 31 H 1.08994 * 109.47141 * 60.00320 * 3 2 1 32 32 H 1.09003 * 109.47195 * 299.99692 * 3 2 1 33 33 H 0.96997 * 119.99673 * 5.45505 * 7 5 4 34 34 H 1.07996 * 119.91022 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.07464 * 180.27292 * 10 9 8 36 36 H 0.96997 * 120.00026 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.08780 * 180.02562 * 20 11 10 38 38 H 1.09002 * 109.47190 * 1.93211 * 23 4 3 39 39 H 1.09008 * 109.46866 * 67.82975 * 24 23 4 40 40 H 1.08996 * 109.47097 * 187.83253 * 24 23 4 41 41 H 1.08994 * 109.46801 * 307.83476 * 24 23 4 42 42 H 1.09002 * 109.47480 * 63.71128 * 25 23 4 43 43 H 1.08998 * 109.47233 * 183.71105 * 25 23 4 44 44 H 1.09000 * 109.47197 * 303.70569 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 5.3894 1.5506 -1.1713 7 7 3.5094 1.3235 -2.3320 8 6 4.2108 1.2091 -3.5298 9 6 5.3256 2.0146 -3.7608 10 6 6.0209 1.9042 -4.9287 11 6 5.6037 0.9819 -5.9087 12 6 6.3153 0.8662 -7.1223 13 1 7.3601 1.1365 -7.1635 14 6 5.6672 0.4014 -8.2715 15 7 4.3625 0.2994 -8.2911 16 14 6.6638 -0.0738 -9.7782 17 1 7.0235 -1.5125 -9.7004 18 1 5.8581 0.1696 -11.0016 19 1 7.9024 0.7439 -9.8305 20 6 4.4736 0.1756 -5.6715 21 6 3.7908 0.2932 -4.4957 22 17 2.3970 -0.6988 -4.2006 23 6 4.2380 1.4485 1.2678 24 6 5.1538 0.2247 1.3334 25 6 5.0807 2.7219 1.3639 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.5394 1.3173 -2.3353 34 1 5.6416 2.7246 -3.0109 35 1 6.8866 2.5257 -5.1040 36 1 3.9131 -0.0233 -9.0878 37 1 4.1483 -0.5338 -6.4180 38 1 3.5305 1.4177 2.0965 39 1 5.9469 0.3243 0.5922 40 1 5.5932 0.1526 2.3283 41 1 4.5738 -0.6746 1.1263 42 1 4.4239 3.5916 1.3836 43 1 5.6761 2.6955 2.2765 44 1 5.7424 2.7857 0.5001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580900956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:58 Heat of formation + Delta-G solvation = -37.690679 kcal Electronic energy + Delta-G solvation = -25819.260161 eV Core-core repulsion = 22182.388679 eV Total energy + Delta-G solvation = -3636.871481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70499 -39.66025 -37.51911 -37.20496 -36.38663 -35.22274 -34.32385 -32.32066 -31.25356 -30.54764 -28.02766 -27.24886 -26.57611 -23.98524 -23.20987 -22.54222 -22.22067 -20.60189 -19.38084 -18.70772 -18.23178 -17.24660 -16.50692 -16.44548 -16.01662 -15.89208 -15.56139 -15.29058 -14.76927 -14.59419 -14.52707 -14.33197 -14.00926 -13.94560 -13.58429 -13.34981 -13.12992 -12.93861 -12.89546 -12.84295 -12.66386 -12.45181 -12.34165 -12.11855 -12.06133 -11.98920 -11.92577 -11.83128 -11.59470 -11.49267 -11.21826 -10.73155 -10.49039 -9.63491 -9.38113 -8.88404 -8.62549 -6.34544 0.69182 0.98906 1.41215 1.42276 1.49181 1.54329 1.74346 2.21165 2.24938 2.70374 3.01367 3.60891 3.92481 4.00061 4.05550 4.29261 4.35012 4.37118 4.39666 4.53960 4.66690 4.72896 4.80451 4.85089 4.92049 4.93209 4.97341 5.01771 5.02432 5.19516 5.24323 5.25633 5.27215 5.34554 5.43756 5.45223 5.47170 5.70625 5.85122 5.89025 6.04881 6.10823 6.24375 6.52415 6.86984 6.87680 7.04582 7.71009 8.30976 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.003671 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.297417 B = 7624.608513 C = 8775.600688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.106 3.894 4 N -0.622 5.622 5 C 0.699 3.301 6 O -0.607 6.607 7 N -0.663 5.663 8 C 0.031 3.969 9 C -0.066 4.066 10 C -0.224 4.224 11 C 0.085 3.915 12 C -0.484 4.484 13 H 0.081 0.919 14 C 0.035 3.965 15 N -0.820 5.820 16 Si 0.986 3.014 17 H -0.263 1.263 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.166 4.166 21 C -0.020 4.020 22 Cl -0.091 7.091 23 C 0.161 3.839 24 C -0.163 4.163 25 C -0.166 4.166 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.403 0.597 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.290 0.710 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 0.478 15.706 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.017 4.017 4 N -0.359 5.359 5 C 0.401 3.599 6 O -0.487 6.487 7 N -0.313 5.313 8 C -0.064 4.064 9 C -0.087 4.087 10 C -0.244 4.244 11 C 0.082 3.918 12 C -0.513 4.513 13 H 0.099 0.901 14 C -0.181 4.181 15 N -0.446 5.446 16 Si 0.806 3.194 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.182 1.182 20 C -0.187 4.187 21 C -0.049 4.049 22 Cl -0.062 7.062 23 C 0.058 3.942 24 C -0.221 4.221 25 C -0.224 4.224 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.241 0.759 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.623 0.414 15.646 17.409 hybrid contribution -0.111 -0.340 -1.017 1.079 sum -7.734 0.074 14.629 16.547 Atomic orbital electron populations 1.21674 0.93615 1.02306 1.02714 1.21954 0.97310 0.96719 1.02032 1.21857 0.78020 0.97433 1.04353 1.47410 1.06893 1.77664 1.03919 1.16112 0.85027 0.77888 0.80845 1.90829 1.13554 1.58025 1.86291 1.42086 1.09194 1.76772 1.03268 1.16624 1.00037 1.02294 0.87473 1.20326 0.94935 0.97442 0.95947 1.20915 1.03933 1.03123 0.96434 1.17852 0.91616 0.89323 0.93026 1.19815 0.98238 1.39474 0.93813 0.90097 1.26765 0.95887 0.92103 1.03310 1.69840 1.10122 1.33478 1.31134 0.85137 0.78853 0.79477 0.75887 1.18780 1.19118 1.18217 1.20942 0.99131 1.02922 0.95659 1.20506 0.92020 0.95354 0.97037 1.98239 1.42120 1.69632 1.96215 1.21058 0.94128 0.95058 0.83919 1.22158 1.00069 0.97280 1.02584 1.22196 1.00537 0.97023 1.02652 0.92538 0.90709 0.92678 0.94107 0.91032 0.86886 0.91265 0.75908 0.87077 0.87606 0.89886 0.85756 0.86102 0.94151 0.89703 0.93351 0.92346 0.90256 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.14 -2.52 6.25 30.59 0.19 -2.33 16 3 C 0.11 1.90 5.05 86.38 0.44 2.34 16 4 N -0.62 -15.77 2.42 -815.71 -1.98 -17.75 16 5 C 0.70 24.98 7.49 179.06 1.34 26.32 16 6 O -0.61 -26.19 10.52 -3.97 -0.04 -26.23 16 7 N -0.66 -24.46 4.75 -316.69 -1.51 -25.97 16 8 C 0.03 1.40 6.17 38.58 0.24 1.64 16 9 C -0.07 -3.18 8.59 22.13 0.19 -2.99 16 10 C -0.22 -11.39 9.74 22.48 0.22 -11.17 16 11 C 0.08 4.60 5.58 -21.28 -0.12 4.48 16 12 C -0.48 -25.74 9.06 23.38 0.21 -25.52 16 13 H 0.08 4.14 7.87 -2.91 -0.02 4.12 16 14 C 0.03 1.70 5.25 85.23 0.45 2.15 16 15 N -0.82 -41.73 10.70 21.82 0.23 -41.49 16 16 Si 0.99 37.53 29.58 68.60 2.03 39.56 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 C -0.17 -8.71 8.39 22.49 0.19 -8.52 16 21 C -0.02 -0.96 6.30 22.18 0.14 -0.82 16 22 Cl -0.09 -3.51 28.07 -2.72 -0.08 -3.58 16 23 C 0.16 3.42 3.27 44.99 0.15 3.57 16 24 C -0.16 -3.91 8.97 71.98 0.65 -3.26 16 25 C -0.17 -3.76 9.19 71.98 0.66 -3.10 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 1.31 7.93 -2.39 -0.02 1.29 16 32 H 0.07 1.30 6.53 -2.39 -0.02 1.29 16 33 H 0.40 12.83 6.13 -92.71 -0.57 12.26 16 34 H 0.11 5.25 6.75 -2.91 -0.02 5.23 16 35 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 36 H 0.29 13.34 8.30 -92.71 -0.77 12.58 16 37 H 0.12 6.80 6.01 -2.91 -0.02 6.79 16 38 H 0.12 1.64 7.81 -2.39 -0.02 1.62 16 39 H 0.04 1.31 6.48 -2.38 -0.02 1.29 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.44 6.01 -2.39 -0.01 1.43 16 Total: -1.00 -63.03 367.73 4.76 -58.27 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.44 Total: 35.70 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.65 Total: -18.50 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -3.25 Total: -85.21 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.04 Total: -26.23 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 17 Polarization: -3.51 SS G_CDS: -0.08 Total: -3.58 kcal Total: -63.03 4.76 -58.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580900956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.584 kcal (2) G-P(sol) polarization free energy of solvation -63.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds