Wall clock time and date at job start Tue Mar 31 2020 14:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46970 * 2 1 4 4 H 1.08999 * 109.47891 * 54.99686 * 3 2 1 5 5 C 1.50707 * 109.47244 * 174.99850 * 3 2 1 6 6 H 1.07997 * 119.99879 * 119.99464 * 5 3 2 7 7 C 1.37879 * 119.99510 * 299.99719 * 5 3 2 8 8 N 1.31514 * 120.00303 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99650 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46767 * 90.00289 * 9 7 5 11 11 H 1.48497 * 109.47585 * 210.00126 * 9 7 5 12 12 H 1.48505 * 109.47492 * 330.00573 * 9 7 5 13 13 N 1.46498 * 109.47255 * 294.99626 * 3 2 1 14 14 C 1.34779 * 119.99904 * 85.00011 * 13 3 2 15 15 O 1.21590 * 119.99973 * 0.02562 * 14 13 3 16 16 N 1.34774 * 119.99772 * 180.02562 * 14 13 3 17 17 C 1.40059 * 119.99892 * 185.13444 * 16 14 13 18 18 C 1.38885 * 120.01500 * 33.85130 * 17 16 14 19 19 C 1.38189 * 120.08045 * 180.02562 * 18 17 16 20 20 C 1.38318 * 120.11580 * 0.02562 * 19 18 17 21 21 F 1.35095 * 119.98352 * 179.97438 * 20 19 18 22 22 C 1.39055 * 120.03041 * 359.97438 * 20 19 18 23 23 N 1.40064 * 120.04396 * 179.97438 * 22 20 19 24 24 C 1.34784 * 120.00555 * 212.16433 * 23 22 20 25 25 N 1.34775 * 120.00045 * 175.41933 * 24 23 22 26 26 O 1.21592 * 119.99541 * 355.42448 * 24 23 22 27 27 C 1.38721 * 119.91639 * 359.68188 * 22 20 19 28 28 H 1.09001 * 109.46835 * 300.00152 * 1 2 3 29 29 H 1.09000 * 109.46238 * 60.00137 * 1 2 3 30 30 H 1.08999 * 109.46720 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47244 * 239.99677 * 2 1 3 32 32 H 1.09006 * 109.46884 * 119.99643 * 2 1 3 33 33 H 0.96999 * 119.99660 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00191 * 265.00756 * 13 3 2 35 35 H 0.97001 * 120.00533 * 5.13239 * 16 14 13 36 36 H 1.07996 * 119.95282 * 0.02858 * 18 17 16 37 37 H 1.08001 * 119.94081 * 179.97438 * 19 18 17 38 38 H 0.97003 * 120.00235 * 32.16958 * 23 22 20 39 39 H 0.96999 * 120.00404 * 0.02562 * 25 24 23 40 40 H 0.96996 * 119.99576 * 180.02562 * 25 24 23 41 41 H 1.07993 * 120.06226 * 180.31904 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4444 0.1239 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8785 1.2281 8 7 3.4061 0.3376 2.1735 9 14 6.0050 0.8802 1.3814 10 1 6.4426 2.1131 2.0839 11 1 6.4391 -0.3108 2.1548 12 1 6.6132 0.8397 0.0272 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3412 2.6325 -0.4318 16 7 0.0786 3.2664 -2.5189 17 6 -1.1418 3.9483 -2.6039 18 6 -1.6436 4.6157 -1.4941 19 6 -2.8478 5.2885 -1.5763 20 6 -3.5573 5.2990 -2.7636 21 9 -4.7345 5.9571 -2.8409 22 6 -3.0593 4.6323 -3.8777 23 7 -3.7778 4.6422 -5.0800 24 6 -3.7211 3.5801 -5.9079 25 7 -4.4834 3.5503 -7.0189 26 8 -2.9822 2.6489 -5.6523 27 6 -1.8471 3.9625 -3.7987 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.8293 -0.0608 2.9501 34 1 2.2720 2.1230 -1.9978 35 1 0.6671 3.2276 -3.2890 36 1 -1.0918 4.6089 -0.5657 37 1 -3.2361 5.8064 -0.7117 38 1 -4.3161 5.4136 -5.3170 39 1 -5.0726 4.2933 -7.2230 40 1 -4.4429 2.7857 -7.6144 41 1 -1.4557 3.4483 -4.6639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590607544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:35 Heat of formation + Delta-G solvation = -98.757880 kcal Electronic energy + Delta-G solvation = -27219.929196 eV Core-core repulsion = 23048.532924 eV Total energy + Delta-G solvation = -4171.396273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.87100 -41.86674 -41.23712 -39.45656 -37.23271 -36.10829 -35.27223 -34.65315 -34.20289 -32.69948 -30.90127 -29.82831 -28.61962 -25.12938 -24.77528 -23.79884 -22.64888 -21.85767 -21.30126 -20.01441 -19.68336 -19.15503 -18.47649 -18.12988 -17.71360 -17.25932 -16.96352 -16.66315 -16.52003 -16.24010 -15.99388 -15.73366 -15.37361 -15.07195 -14.85024 -14.55173 -14.41698 -14.20026 -13.80444 -13.52806 -13.38405 -13.15782 -12.87787 -12.76740 -12.67484 -12.14973 -12.05095 -11.95015 -11.57438 -11.27611 -11.19393 -11.02371 -10.86625 -10.71707 -10.51487 -9.71683 -9.43941 -8.86094 -8.13868 -6.30583 0.04649 0.18988 1.46683 1.47263 1.54826 1.58294 1.79661 1.97781 2.20757 2.44237 2.72066 3.15865 3.17287 3.40882 3.48278 3.79018 4.14939 4.20865 4.34988 4.51986 4.57669 4.59379 4.77730 4.94533 5.07417 5.17013 5.20676 5.23497 5.32277 5.45863 5.51809 5.56397 5.63651 5.72225 5.77582 5.88284 5.92975 5.98003 6.18700 6.28132 6.77287 6.86557 7.25138 7.37446 7.47586 7.72178 8.91689 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002713 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.666117 B =10319.056848 C =10777.130719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.714 5.714 14 C 0.694 3.306 15 O -0.608 6.608 16 N -0.678 5.678 17 C 0.179 3.821 18 C -0.125 4.125 19 C -0.106 4.106 20 C 0.046 3.954 21 F -0.135 7.135 22 C 0.154 3.846 23 N -0.668 5.668 24 C 0.700 3.300 25 N -0.835 5.835 26 O -0.618 6.618 27 C -0.135 4.135 28 H 0.028 0.972 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.420 0.580 36 H 0.127 0.873 37 H 0.161 0.839 38 H 0.427 0.573 39 H 0.418 0.582 40 H 0.426 0.574 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.646 11.596 -19.208 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.185 1.185 13 N -0.366 5.366 14 C 0.395 3.605 15 O -0.488 6.488 16 N -0.326 5.326 17 C 0.082 3.918 18 C -0.147 4.147 19 C -0.125 4.125 20 C 0.024 3.976 21 F -0.114 7.114 22 C 0.056 3.944 23 N -0.318 5.318 24 C 0.399 3.601 25 N -0.405 5.405 26 O -0.498 6.498 27 C -0.158 4.158 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.257 0.743 36 H 0.145 0.855 37 H 0.178 0.822 38 H 0.266 0.734 39 H 0.249 0.751 40 H 0.261 0.739 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.678 10.738 -17.899 25.518 hybrid contribution 0.719 0.212 -0.539 0.923 sum -13.960 10.949 -18.438 25.588 Atomic orbital electron populations 1.21645 0.97154 0.98820 1.00181 1.21816 0.93547 0.99453 1.01256 1.18285 0.93473 0.88719 0.80190 0.97847 1.21558 0.91298 1.38913 1.06688 0.90976 1.25740 1.03192 0.94400 0.95048 1.70047 1.37024 1.38342 1.09851 0.85380 0.79229 0.77372 0.78545 1.20435 1.21079 1.18528 1.45456 1.13756 1.58862 1.18556 1.16132 0.83004 0.78558 0.82830 1.90891 1.52518 1.65520 1.39827 1.42547 1.20259 1.55428 1.14413 1.17498 0.86722 0.93050 0.94537 1.21039 0.97461 0.97190 0.99003 1.20977 0.94309 1.00213 0.97034 1.17210 0.84653 1.02109 0.93676 1.91459 1.44127 1.79016 1.96782 1.17036 0.91662 1.00461 0.85248 1.42183 1.50929 1.19985 1.18660 1.16144 0.81112 0.81798 0.81055 1.42719 1.46237 1.27196 1.24301 1.90989 1.44441 1.38569 1.75801 1.20844 0.92952 1.03233 0.98805 0.95300 0.94251 0.94012 0.94227 0.90825 0.92593 0.76372 0.74266 0.85543 0.82167 0.73419 0.75056 0.73947 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.90 16 3 C 0.30 15.14 2.24 44.25 0.10 15.24 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 5 C -0.55 -28.58 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.88 5.29 84.66 0.45 1.32 16 8 N -0.91 -52.07 11.29 21.45 0.24 -51.82 16 9 Si 0.97 41.85 29.54 68.60 2.03 43.88 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 13 N -0.71 -29.38 5.03 -461.41 -2.32 -31.70 16 14 C 0.69 27.96 6.87 179.05 1.23 29.19 16 15 O -0.61 -28.88 11.19 -4.00 -0.04 -28.93 16 16 N -0.68 -21.09 5.35 -317.16 -1.70 -22.79 16 17 C 0.18 5.45 6.27 38.10 0.24 5.69 16 18 C -0.13 -3.87 8.65 22.41 0.19 -3.67 16 19 C -0.11 -2.63 10.01 22.28 0.22 -2.40 16 20 C 0.05 1.06 7.30 22.49 0.16 1.23 16 21 F -0.14 -2.73 16.91 44.97 0.76 -1.97 16 22 C 0.15 3.57 6.35 38.14 0.24 3.81 16 23 N -0.67 -10.88 5.26 -317.04 -1.67 -12.55 16 24 C 0.70 13.03 8.69 179.05 1.56 14.59 16 25 N -0.83 -6.46 8.88 -184.74 -1.64 -8.10 16 26 O -0.62 -17.90 14.45 -4.01 -0.06 -17.96 16 27 C -0.13 -3.65 8.63 22.51 0.19 -3.46 16 28 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 29 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 4.09 5.95 -2.38 -0.01 4.07 16 33 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.40 13.89 8.56 -92.71 -0.79 13.10 16 35 H 0.42 10.12 8.83 -92.71 -0.82 9.30 16 36 H 0.13 4.53 6.44 -2.91 -0.02 4.52 16 37 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 38 H 0.43 3.78 8.62 -92.71 -0.80 2.98 16 39 H 0.42 0.12 8.85 -92.71 -0.82 -0.70 16 40 H 0.43 2.63 8.93 -92.71 -0.83 1.80 16 41 H 0.15 4.25 6.02 -2.91 -0.02 4.23 16 Total: -1.00 -74.11 345.88 -1.70 -75.81 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -2.89 Total: 33.91 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 5.59 Total: 22.23 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -7.08 Total: -126.97 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.10 Total: -46.89 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.76 Total: -1.97 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -74.11 -1.70 -75.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590607544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.952 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds