Wall clock time and date at job start Tue Mar 31 2020 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 H 1.08997 * 109.47120 * 305.51509 * 3 2 1 5 5 C 1.50700 * 109.46778 * 185.52040 * 3 2 1 6 6 H 1.08004 * 119.99744 * 240.00338 * 5 3 2 7 7 C 1.37876 * 120.00253 * 59.99852 * 5 3 2 8 8 N 1.31515 * 120.00133 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00080 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47112 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47237 * 120.00330 * 9 7 5 12 12 H 1.48501 * 109.47445 * 240.00658 * 9 7 5 13 13 N 1.46896 * 109.47057 * 65.51920 * 3 2 1 14 14 C 1.46901 * 111.00063 * 207.31852 * 13 3 2 15 15 H 1.09002 * 109.46726 * 322.94563 * 14 13 3 16 16 C 1.53001 * 109.47145 * 82.94790 * 14 13 3 17 17 C 1.50697 * 109.47064 * 202.94817 * 14 13 3 18 18 O 1.21290 * 120.00404 * 359.97438 * 17 14 13 19 19 N 1.34781 * 119.99955 * 179.97438 * 17 14 13 20 20 C 1.39970 * 119.99996 * 184.86705 * 19 17 14 21 21 C 1.38859 * 120.07429 * 331.08503 * 20 19 17 22 22 C 1.38125 * 119.93793 * 179.72662 * 21 20 19 23 23 C 1.38289 * 120.09200 * 0.54852 * 22 21 20 24 24 C 1.50703 * 119.92322 * 179.74892 * 23 22 21 25 25 C 1.38264 * 120.15164 * 359.72836 * 23 22 21 26 26 C 1.38226 * 120.05842 * 359.97438 * 25 23 22 27 27 Cl 1.73599 * 120.04575 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.47239 * 54.41114 * 1 2 3 29 29 H 1.09001 * 109.47294 * 294.40641 * 1 2 3 30 30 H 1.09002 * 109.47244 * 174.41212 * 1 2 3 31 31 H 1.08994 * 109.47216 * 119.99811 * 2 1 3 32 32 H 1.09005 * 109.46879 * 240.00405 * 2 1 3 33 33 H 0.97001 * 120.00209 * 179.97438 * 8 7 5 34 34 H 1.00894 * 111.00407 * 331.27553 * 13 3 2 35 35 H 1.08998 * 109.46950 * 64.91655 * 16 14 13 36 36 H 1.08999 * 109.46867 * 184.92335 * 16 14 13 37 37 H 1.08999 * 109.46650 * 304.91646 * 16 14 13 38 38 H 0.97000 * 119.99926 * 4.86917 * 19 17 14 39 39 H 1.07993 * 120.03085 * 359.97240 * 21 20 19 40 40 H 1.07998 * 119.95075 * 180.26016 * 22 21 20 41 41 H 1.09001 * 109.47236 * 269.97722 * 24 23 22 42 42 H 1.08999 * 109.47017 * 29.97936 * 24 23 22 43 43 H 1.09001 * 109.47076 * 149.98231 * 24 23 22 44 44 H 1.08003 * 119.97055 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9841 -0.8365 5 6 3.5407 1.4447 -0.1367 6 1 4.1526 1.8869 0.6357 7 6 4.1326 0.8822 -1.2476 8 7 3.3875 0.3441 -2.1883 9 14 5.9929 0.8855 -1.4173 10 1 6.5969 1.5470 -0.2328 11 1 6.4843 -0.5130 -1.5070 12 1 6.3766 1.6248 -2.6468 13 7 1.6620 2.0955 1.2604 14 6 1.5281 3.5474 1.0817 15 1 2.2907 3.8998 0.3872 16 6 0.1408 3.8664 0.5209 17 6 1.7029 4.2354 2.4111 18 8 1.9174 3.5807 3.4093 19 7 1.6208 5.5783 2.4908 20 6 1.8836 6.2247 3.7042 21 6 1.6410 5.5735 4.9063 22 6 1.9067 6.2120 6.1020 23 6 2.4031 7.5027 6.1035 24 6 2.6862 8.1978 7.4103 25 6 2.6406 8.1568 4.9087 26 6 2.3828 7.5216 3.7085 27 17 2.6805 8.3434 2.2086 28 1 -0.3634 0.5981 -0.8357 29 1 -0.3634 0.4246 0.9358 30 1 -0.3634 -1.0228 -0.1001 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8039 -0.0514 -2.9700 34 1 0.8134 1.6973 1.6337 35 1 -0.6188 3.5935 1.2534 36 1 0.0721 4.9329 0.3062 37 1 -0.0191 3.3001 -0.3966 38 1 1.3796 6.0969 1.7073 39 1 1.2488 4.5673 4.9064 40 1 1.7221 5.7041 7.0371 41 1 1.7955 8.7345 7.7369 42 1 2.9613 7.4587 8.1628 43 1 3.5066 8.9029 7.2766 44 1 3.0287 9.1647 4.9133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:11 Heat of formation + Delta-G solvation = -22.691739 kcal Electronic energy + Delta-G solvation = -25201.823540 eV Core-core repulsion = 21565.602462 eV Total energy + Delta-G solvation = -3636.221079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58219 -38.82399 -36.64764 -36.55731 -34.90703 -33.33162 -31.80030 -31.26411 -30.85005 -28.74864 -26.67959 -26.15890 -23.94147 -23.20010 -22.64415 -21.43430 -19.85913 -19.68451 -17.97250 -16.80782 -16.18699 -16.03932 -15.68332 -14.95268 -14.82588 -14.55576 -14.17418 -14.09388 -13.84542 -13.71389 -13.48888 -13.02017 -12.86277 -12.63202 -12.58001 -12.21180 -12.09845 -11.88372 -11.76180 -11.57401 -11.42956 -11.18874 -11.09017 -10.96046 -10.87766 -10.60340 -10.27243 -9.97300 -9.90915 -9.67794 -9.27033 -9.10528 -8.88396 -8.37086 -8.02801 -7.28806 -5.99071 -4.03056 1.00599 1.18044 1.97754 2.85197 3.07446 3.31193 3.39595 3.46359 3.58537 4.44364 4.60677 4.70836 4.86619 4.99471 5.09007 5.11757 5.29094 5.30305 5.37943 5.40236 5.49639 5.57795 5.67984 5.78008 5.89042 6.04486 6.08137 6.12277 6.13747 6.16035 6.31256 6.36278 6.40091 6.45301 6.81046 6.86100 7.02694 7.11090 7.34597 7.49111 7.74766 7.90450 8.18876 8.32946 8.40947 8.69024 9.06164 9.62557 11.06043 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.003243 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.896058 B = 8631.178333 C = 9224.474524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.007 0.993 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.662 5.662 14 C 0.078 3.922 15 H 0.113 0.887 16 C -0.179 4.179 17 C 0.522 3.478 18 O -0.496 6.496 19 N -0.678 5.678 20 C 0.167 3.833 21 C -0.118 4.118 22 C -0.095 4.095 23 C -0.104 4.104 24 C -0.109 4.109 25 C -0.092 4.092 26 C -0.070 4.070 27 Cl -0.069 7.069 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.259 0.741 34 H 0.326 0.674 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 15.725 12.049 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.025 0.975 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.293 5.293 14 C -0.036 4.036 15 H 0.131 0.869 16 C -0.239 4.239 17 C 0.310 3.690 18 O -0.367 6.367 19 N -0.324 5.324 20 C 0.070 3.930 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.105 4.105 24 C -0.166 4.166 25 C -0.111 4.111 26 C -0.100 4.100 27 Cl -0.040 7.040 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.247 0.753 39 H 0.176 0.824 40 H 0.147 0.853 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.837 15.148 12.608 20.555 hybrid contribution 0.158 0.405 -1.333 1.402 sum -5.679 15.553 11.276 20.032 Atomic orbital electron populations 1.21891 0.99547 0.99847 0.99483 1.21783 0.91264 1.00183 1.03307 1.19229 0.95565 0.90046 0.83765 0.97503 1.21287 0.91250 1.36561 1.04239 0.91950 1.24940 0.98115 0.95549 0.95817 1.69874 1.34618 1.39530 1.09575 0.86510 0.85822 0.77682 0.77848 1.19754 1.21081 1.21225 1.60367 1.38151 0.98687 1.32141 1.21375 0.97769 0.92735 0.91750 0.86896 1.22519 0.97133 1.01812 1.02410 1.21422 0.74760 0.80361 0.92498 1.90596 1.44657 1.64298 1.37173 1.43840 1.69366 1.08204 1.10955 1.17617 0.97645 0.90530 0.87204 1.21595 1.00544 1.01981 0.89728 1.21085 0.98171 0.93923 0.98152 1.19797 1.01056 0.94832 0.94816 1.20735 1.01835 1.00269 0.93728 1.20678 1.00641 1.00084 0.89738 1.20698 1.07443 0.93872 0.87947 1.98361 1.94695 1.78356 1.32593 0.93868 0.94611 0.94306 0.93863 0.88071 0.93118 0.85539 0.92510 0.92552 0.90687 0.75307 0.82364 0.85257 0.91217 0.91365 0.91568 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.65 37.16 0.36 -2.44 16 2 C -0.13 -2.92 5.34 -26.73 -0.14 -3.06 16 3 C 0.22 5.26 1.80 -68.86 -0.12 5.14 16 4 H 0.01 0.19 6.95 -51.93 -0.36 -0.18 16 5 C -0.49 -13.47 8.61 -34.44 -0.30 -13.76 16 6 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.66 -13.85 5.53 -102.17 -0.57 -14.42 16 14 C 0.08 1.38 2.82 -68.87 -0.19 1.19 16 15 H 0.11 2.15 7.74 -51.93 -0.40 1.75 16 16 C -0.18 -2.51 9.02 37.16 0.34 -2.18 16 17 C 0.52 8.93 7.10 -10.98 -0.08 8.85 16 18 O -0.50 -9.91 13.50 5.55 0.07 -9.84 16 19 N -0.68 -9.51 5.07 -9.83 -0.05 -9.56 16 20 C 0.17 2.32 6.41 -83.64 -0.54 1.79 16 21 C -0.12 -1.63 8.76 -39.39 -0.35 -1.97 16 22 C -0.09 -1.06 9.69 -39.60 -0.38 -1.45 16 23 C -0.10 -1.05 5.88 -104.59 -0.62 -1.66 16 24 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 25 C -0.09 -0.98 9.48 -39.58 -0.38 -1.36 16 26 C -0.07 -0.87 6.34 -39.32 -0.25 -1.12 16 27 Cl -0.07 -0.79 27.85 -51.86 -1.44 -2.23 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.60 6.65 -51.93 -0.35 0.26 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.33 6.38 6.35 -39.29 -0.25 6.13 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.63 7.60 -51.93 -0.39 0.24 16 37 H 0.07 1.14 7.25 -51.93 -0.38 0.76 16 38 H 0.41 4.88 7.26 -40.82 -0.30 4.58 16 39 H 0.16 2.43 5.75 -52.49 -0.30 2.13 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 43 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 44 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -29.89 370.91 -9.55 -39.44 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.38 Total: 9.83 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.38 Total: -11.00 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.01 Total: -48.27 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.44 Total: -2.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.89 -9.55 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.745 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds