Wall clock time and date at job start Tue Mar 31 2020 14:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 H 1.08997 * 109.47120 * 305.51509 * 3 2 1 5 5 C 1.50700 * 109.46778 * 185.52040 * 3 2 1 6 6 H 1.08004 * 119.99744 * 240.00338 * 5 3 2 7 7 C 1.37876 * 120.00253 * 59.99852 * 5 3 2 8 8 N 1.31515 * 120.00133 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00080 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47112 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47237 * 120.00330 * 9 7 5 12 12 H 1.48501 * 109.47445 * 240.00658 * 9 7 5 13 13 N 1.46896 * 109.47057 * 65.51920 * 3 2 1 14 14 C 1.46901 * 111.00063 * 207.31852 * 13 3 2 15 15 H 1.09002 * 109.46726 * 322.94563 * 14 13 3 16 16 C 1.53001 * 109.47145 * 82.94790 * 14 13 3 17 17 C 1.50697 * 109.47064 * 202.94817 * 14 13 3 18 18 O 1.21290 * 120.00404 * 359.97438 * 17 14 13 19 19 N 1.34781 * 119.99955 * 179.97438 * 17 14 13 20 20 C 1.39970 * 119.99996 * 184.86705 * 19 17 14 21 21 C 1.38859 * 120.07429 * 331.08503 * 20 19 17 22 22 C 1.38125 * 119.93793 * 179.72662 * 21 20 19 23 23 C 1.38289 * 120.09200 * 0.54852 * 22 21 20 24 24 C 1.50703 * 119.92322 * 179.74892 * 23 22 21 25 25 C 1.38264 * 120.15164 * 359.72836 * 23 22 21 26 26 C 1.38226 * 120.05842 * 359.97438 * 25 23 22 27 27 Cl 1.73599 * 120.04575 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.47239 * 54.41114 * 1 2 3 29 29 H 1.09001 * 109.47294 * 294.40641 * 1 2 3 30 30 H 1.09002 * 109.47244 * 174.41212 * 1 2 3 31 31 H 1.08994 * 109.47216 * 119.99811 * 2 1 3 32 32 H 1.09005 * 109.46879 * 240.00405 * 2 1 3 33 33 H 0.97001 * 120.00209 * 179.97438 * 8 7 5 34 34 H 1.00894 * 111.00407 * 331.27553 * 13 3 2 35 35 H 1.08998 * 109.46950 * 64.91655 * 16 14 13 36 36 H 1.08999 * 109.46867 * 184.92335 * 16 14 13 37 37 H 1.08999 * 109.46650 * 304.91646 * 16 14 13 38 38 H 0.97000 * 119.99926 * 4.86917 * 19 17 14 39 39 H 1.07993 * 120.03085 * 359.97240 * 21 20 19 40 40 H 1.07998 * 119.95075 * 180.26016 * 22 21 20 41 41 H 1.09001 * 109.47236 * 269.97722 * 24 23 22 42 42 H 1.08999 * 109.47017 * 29.97936 * 24 23 22 43 43 H 1.09001 * 109.47076 * 149.98231 * 24 23 22 44 44 H 1.08003 * 119.97055 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5982 1.9841 -0.8365 5 6 3.5407 1.4447 -0.1367 6 1 4.1526 1.8869 0.6357 7 6 4.1326 0.8822 -1.2476 8 7 3.3875 0.3441 -2.1883 9 14 5.9929 0.8855 -1.4173 10 1 6.5969 1.5470 -0.2328 11 1 6.4843 -0.5130 -1.5070 12 1 6.3766 1.6248 -2.6468 13 7 1.6620 2.0955 1.2604 14 6 1.5281 3.5474 1.0817 15 1 2.2907 3.8998 0.3872 16 6 0.1408 3.8664 0.5209 17 6 1.7029 4.2354 2.4111 18 8 1.9174 3.5807 3.4093 19 7 1.6208 5.5783 2.4908 20 6 1.8836 6.2247 3.7042 21 6 1.6410 5.5735 4.9063 22 6 1.9067 6.2120 6.1020 23 6 2.4031 7.5027 6.1035 24 6 2.6862 8.1978 7.4103 25 6 2.6406 8.1568 4.9087 26 6 2.3828 7.5216 3.7085 27 17 2.6805 8.3434 2.2086 28 1 -0.3634 0.5981 -0.8357 29 1 -0.3634 0.4246 0.9358 30 1 -0.3634 -1.0228 -0.1001 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8039 -0.0514 -2.9700 34 1 0.8134 1.6973 1.6337 35 1 -0.6188 3.5935 1.2534 36 1 0.0721 4.9329 0.3062 37 1 -0.0191 3.3001 -0.3966 38 1 1.3796 6.0969 1.7073 39 1 1.2488 4.5673 4.9064 40 1 1.7221 5.7041 7.0371 41 1 1.7955 8.7345 7.7369 42 1 2.9613 7.4587 8.1628 43 1 3.5066 8.9029 7.2766 44 1 3.0287 9.1647 4.9133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594010421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:10 Heat of formation + Delta-G solvation = -40.151044 kcal Electronic energy + Delta-G solvation = -25202.580633 eV Core-core repulsion = 21565.602462 eV Total energy + Delta-G solvation = -3636.978171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74859 -39.93522 -38.19666 -37.56190 -36.08192 -35.03933 -33.48574 -32.38835 -31.75775 -30.25531 -28.08186 -27.50976 -25.32882 -24.39926 -24.06170 -22.43038 -21.52206 -21.11729 -19.08143 -18.37526 -17.99407 -17.00922 -16.89635 -16.57267 -16.24524 -15.89683 -15.56745 -15.21142 -14.93930 -14.83883 -14.69183 -14.39505 -14.31844 -13.76538 -13.54503 -13.51168 -13.25888 -13.18012 -13.04724 -12.85280 -12.78666 -12.55644 -12.48952 -12.40598 -12.20540 -12.00053 -11.98339 -11.67526 -11.50233 -11.31463 -11.04708 -10.61637 -10.43196 -9.82642 -9.04465 -8.96732 -8.07608 -6.18763 0.06229 0.25191 1.04102 1.37592 1.41032 1.52326 1.55733 1.90829 2.43225 2.64282 3.17273 3.54648 3.65608 3.77455 3.95916 4.10788 4.22008 4.24786 4.27425 4.36619 4.51852 4.58455 4.68097 4.69827 4.70850 4.83968 4.90586 4.93240 5.04054 5.05540 5.12592 5.18681 5.25053 5.27970 5.36802 5.44200 5.56241 5.58695 5.74417 5.88460 5.90375 6.23028 6.36699 6.51481 6.92880 6.94277 7.10352 7.50265 8.94888 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.003243 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.896058 B = 8631.178333 C = 9224.474524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.231 3.769 4 H -0.010 1.010 5 C -0.514 4.514 6 H 0.040 0.960 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.674 5.674 14 C 0.077 3.923 15 H 0.094 0.906 16 C -0.168 4.168 17 C 0.526 3.474 18 O -0.531 6.531 19 N -0.664 5.664 20 C 0.138 3.862 21 C -0.136 4.136 22 C -0.098 4.098 23 C -0.095 4.095 24 C -0.108 4.108 25 C -0.093 4.093 26 C -0.074 4.074 27 Cl -0.064 7.064 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.261 0.739 34 H 0.333 0.667 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 17.672 13.241 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.124 3.876 4 H 0.008 0.992 5 C -0.552 4.552 6 H 0.058 0.942 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.038 4.038 15 H 0.112 0.888 16 C -0.227 4.227 17 C 0.314 3.686 18 O -0.406 6.406 19 N -0.310 5.310 20 C 0.042 3.958 21 C -0.156 4.156 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.165 4.165 25 C -0.112 4.112 26 C -0.104 4.104 27 Cl -0.035 7.035 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.258 0.742 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.180 17.140 13.798 22.855 hybrid contribution 0.281 -0.097 -1.613 1.640 sum -5.899 17.044 12.184 21.766 Atomic orbital electron populations 1.21744 0.95985 1.01226 1.00589 1.21618 0.94468 0.99002 1.01097 1.18944 0.93666 0.90641 0.84398 0.99213 1.21488 0.93115 1.36742 1.03891 0.94183 1.25550 1.01738 0.95304 0.95616 1.69971 1.35886 1.39748 1.09792 0.85660 0.81480 0.77739 0.77643 1.20379 1.20562 1.20286 1.60175 1.39031 1.00666 1.30775 1.21365 0.99470 0.90856 0.92068 0.88788 1.22401 0.94779 1.03706 1.01858 1.21198 0.74516 0.81281 0.91635 1.90588 1.46619 1.65326 1.38029 1.43545 1.68635 1.07118 1.11727 1.17773 0.99672 0.91482 0.86864 1.21534 1.01676 1.01470 0.90938 1.21349 0.97745 0.94595 0.97995 1.20204 0.98969 0.94227 0.96178 1.20825 1.03052 1.00620 0.91962 1.21047 0.99895 1.01081 0.89205 1.20827 1.07269 0.93378 0.88882 1.98361 1.94641 1.78052 1.32427 0.93682 0.92698 0.92601 0.95147 0.91058 0.92961 0.84735 0.91279 0.89480 0.91725 0.74219 0.84496 0.83299 0.89608 0.90491 0.90282 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.65 71.98 0.69 -4.34 16 2 C -0.12 -5.77 5.34 30.60 0.16 -5.61 16 3 C 0.23 11.34 1.80 44.17 0.08 11.42 16 4 H -0.01 -0.50 6.95 -2.39 -0.02 -0.52 16 5 C -0.51 -28.88 8.61 25.60 0.22 -28.66 16 6 H 0.04 2.38 7.81 -2.91 -0.02 2.35 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -51.66 11.29 21.45 0.24 -51.42 16 9 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 N -0.67 -28.91 5.53 -477.16 -2.64 -31.55 16 14 C 0.08 2.75 2.82 44.17 0.12 2.88 16 15 H 0.09 3.72 7.74 -2.39 -0.02 3.70 16 16 C -0.17 -4.58 9.02 71.98 0.65 -3.93 16 17 C 0.53 18.35 7.10 87.66 0.62 18.97 16 18 O -0.53 -21.95 13.50 -3.06 -0.04 -21.99 16 19 N -0.66 -18.64 5.07 -303.41 -1.54 -20.17 16 20 C 0.14 3.81 6.41 38.16 0.24 4.05 16 21 C -0.14 -3.76 8.76 22.39 0.20 -3.56 16 22 C -0.10 -2.08 9.69 22.25 0.22 -1.86 16 23 C -0.09 -1.67 5.88 -19.85 -0.12 -1.79 16 24 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16 25 C -0.09 -1.77 9.48 22.27 0.21 -1.56 16 26 C -0.07 -1.74 6.34 22.44 0.14 -1.60 16 27 Cl -0.06 -1.37 27.85 -2.72 -0.08 -1.45 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.78 6.65 -2.39 -0.02 1.76 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 3.78 5.94 -2.38 -0.01 3.77 16 33 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.33 13.14 6.35 -89.70 -0.57 12.57 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.81 7.60 -2.39 -0.02 1.80 16 37 H 0.06 1.92 7.25 -2.39 -0.02 1.90 16 38 H 0.42 9.75 7.26 -92.71 -0.67 9.08 16 39 H 0.14 4.38 5.75 -2.91 -0.02 4.37 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 43 H 0.08 0.66 8.08 -2.39 -0.02 0.65 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -66.36 370.91 2.37 -64.00 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.22 Total: 30.38 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.61 Total: -14.64 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.94 Total: -103.14 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.04 Total: -21.99 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -66.36 2.37 -64.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.847 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds