Wall clock time and date at job start Tue Mar 31 2020 13:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47524 * 2 1 4 4 C 1.50705 * 109.47294 * 179.97438 * 3 2 1 5 5 N 1.27971 * 125.04919 * 89.97622 * 4 3 2 6 6 N 1.37935 * 115.11741 * 180.02562 * 5 4 3 7 7 H 0.97001 * 122.81523 * 179.97438 * 6 5 4 8 8 C 1.33677 * 114.37891 * 0.02562 * 6 5 4 9 9 N 1.33178 * 125.24281 * 179.97438 * 8 6 5 10 10 C 1.33570 * 120.00030 * 5.86644 * 9 8 6 11 11 O 1.21891 * 120.00032 * 354.69825 * 10 9 8 12 12 N 1.34780 * 120.00497 * 174.69722 * 10 9 8 13 13 C 1.46924 * 120.62499 * 0.02562 * 12 10 9 14 14 C 1.53190 * 108.77438 * 126.37353 * 13 12 10 15 15 C 1.53033 * 109.31691 * 54.62980 * 14 13 12 16 16 C 1.53041 * 109.53916 * 298.64091 * 15 14 13 17 17 H 1.08998 * 109.49870 * 301.40734 * 16 15 14 18 18 C 1.50702 * 109.49869 * 181.31128 * 16 15 14 19 19 H 1.08009 * 119.99892 * 0.15999 * 18 16 15 20 20 C 1.37875 * 120.00160 * 180.16024 * 18 16 15 21 21 N 1.31520 * 120.00181 * 179.97438 * 20 18 16 22 22 Si 1.86793 * 119.99988 * 0.02562 * 20 18 16 23 23 H 1.48499 * 109.47538 * 89.99882 * 22 20 18 24 24 H 1.48503 * 109.47448 * 210.00086 * 22 20 18 25 25 H 1.48505 * 109.47098 * 329.99723 * 22 20 18 26 26 C 1.46923 * 120.63321 * 180.02562 * 12 10 9 27 27 S 1.70870 * 109.51984 * 0.26145 * 8 6 5 28 28 H 1.09002 * 109.47011 * 59.99601 * 1 2 3 29 29 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46722 * 299.99840 * 1 2 3 31 31 H 1.09000 * 109.47095 * 240.00289 * 2 1 3 32 32 H 1.08999 * 109.47499 * 120.00541 * 2 1 3 33 33 H 1.09006 * 109.46991 * 60.00324 * 3 2 1 34 34 H 1.08999 * 109.47175 * 300.00740 * 3 2 1 35 35 H 1.09002 * 109.58793 * 246.15903 * 13 12 10 36 36 H 1.09005 * 109.58936 * 6.58463 * 13 12 10 37 37 H 1.09004 * 109.50304 * 174.58488 * 14 13 12 38 38 H 1.09003 * 109.49874 * 294.68241 * 14 13 12 39 39 H 1.09005 * 109.45824 * 58.65980 * 15 14 13 40 40 H 1.09000 * 109.46704 * 178.63036 * 15 14 13 41 41 H 0.96998 * 119.99966 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.58746 * 353.41830 * 26 12 10 43 43 H 1.09007 * 109.58570 * 113.84312 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.2825 1.4418 -1.0467 6 7 5.6411 1.4413 -0.8082 7 1 6.2998 1.4404 -1.5203 8 6 5.9740 1.4410 0.4864 9 7 7.2188 1.4401 0.9598 10 6 8.2522 1.5575 0.1216 11 8 8.0622 1.5683 -1.0824 12 7 9.5050 1.6641 0.6070 13 6 9.7500 1.6521 2.0556 14 6 10.7862 0.5690 2.3715 15 6 12.0387 0.8042 1.5241 16 6 11.6777 0.7093 0.0399 17 1 11.2528 -0.2724 -0.1692 18 6 12.9176 0.9092 -0.7931 19 1 13.8689 1.0836 -0.3122 20 6 12.8377 0.8693 -2.1689 21 7 13.9197 1.0441 -2.8959 22 14 11.1924 0.5683 -3.0005 23 1 10.5172 1.8677 -3.2470 24 1 11.4113 -0.1288 -4.2934 25 1 10.3405 -0.2735 -2.1224 26 6 10.6516 1.7945 -0.3024 27 16 4.5565 1.4340 1.4405 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 10.1300 2.6242 2.3701 36 1 8.8206 1.4332 2.5816 37 1 11.0485 0.6135 3.4285 38 1 10.3697 -0.4115 2.1405 39 1 12.4407 1.7947 1.7375 40 1 12.7870 0.0491 1.7646 41 1 13.8635 1.0157 -3.8638 42 1 10.3172 1.6697 -1.3322 43 1 11.1050 2.7782 -0.1799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596655286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:54 Heat of formation + Delta-G solvation = 45.585935 kcal Electronic energy + Delta-G solvation = -25229.708465 eV Core-core repulsion = 21630.784586 eV Total energy + Delta-G solvation = -3598.923879 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05509 -39.58704 -37.40221 -36.03459 -34.15244 -33.36701 -32.00950 -31.24425 -30.40433 -27.97518 -26.18658 -25.10051 -24.26175 -22.67434 -21.95501 -21.30935 -20.16942 -19.35826 -18.83384 -17.39466 -16.70885 -16.38839 -16.12839 -16.06256 -15.38243 -14.93605 -14.83421 -14.31481 -13.92954 -13.83473 -13.72292 -13.15398 -13.01901 -12.85633 -12.70298 -12.54972 -12.33001 -12.22610 -11.95832 -11.50302 -11.34029 -11.26358 -11.15273 -11.04404 -10.60918 -10.51625 -10.34700 -10.12236 -10.04641 -9.73882 -9.40707 -9.09975 -9.05511 -8.62391 -8.50734 -7.85202 -6.09662 -4.10521 0.26921 0.61028 0.95517 1.30000 2.24035 3.36879 3.38911 3.48124 3.57708 3.79411 3.93811 4.33339 4.41272 4.43159 4.57459 4.93587 4.95088 5.09288 5.13548 5.23100 5.23526 5.44446 5.51494 5.55469 5.60805 5.66135 5.75708 5.98579 6.13018 6.16886 6.24398 6.41610 6.49786 6.56871 6.71692 6.81177 6.99536 7.06056 7.18925 7.26398 7.47438 7.73795 7.99497 8.49097 8.83959 8.94039 9.52309 11.02311 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.003168 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.266864 B = 8837.088412 C = 9863.244360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.036 4.036 4 C 0.041 3.959 5 N -0.223 5.223 6 N -0.499 5.499 7 H 0.461 0.539 8 C 0.356 3.644 9 N -0.604 5.604 10 C 0.671 3.329 11 O -0.629 6.629 12 N -0.582 5.582 13 C 0.118 3.882 14 C -0.136 4.136 15 C -0.101 4.101 16 C 0.005 3.995 17 H 0.029 0.971 18 C -0.514 4.514 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.881 3.119 23 H -0.274 1.274 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.110 3.890 27 S 0.185 5.815 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.265 0.735 42 H 0.079 0.921 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.815 0.659 11.669 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.259 4.259 5 N -0.038 5.038 6 N -0.245 5.245 7 H 0.323 0.677 8 C -0.026 4.026 9 N -0.362 5.362 10 C 0.369 3.631 11 O -0.512 6.512 12 N -0.313 5.313 13 C -0.005 4.005 14 C -0.175 4.175 15 C -0.139 4.139 16 C -0.015 4.015 17 H 0.047 0.953 18 C -0.552 4.552 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.533 5.533 22 Si 0.711 3.289 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.190 1.190 26 C -0.011 4.011 27 S 0.419 5.581 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.469 0.642 11.716 29.870 hybrid contribution 0.130 -0.065 -2.288 2.293 sum -27.339 0.577 9.428 28.925 Atomic orbital electron populations 1.21755 0.94513 1.02391 1.02246 1.21581 0.96655 0.94510 1.03491 1.20387 0.82206 0.99687 1.05440 1.28332 1.02260 1.03746 0.91603 1.74084 0.90091 1.14822 1.24798 1.48244 1.03469 1.64407 1.08383 0.67659 1.24735 1.00434 0.90959 0.86430 1.69399 0.94032 1.37253 1.35517 1.17036 0.84017 0.77840 0.84161 1.90496 1.84393 1.58759 1.17589 1.47416 1.04443 1.71369 1.08056 1.21648 0.99928 0.98848 0.80067 1.21997 0.97063 0.98785 0.99606 1.21448 0.95446 1.01265 0.95695 1.19508 0.94449 0.94173 0.93380 0.95259 1.20969 0.93688 1.49853 0.90675 0.90345 1.25040 0.96247 0.94195 0.97519 1.69892 1.28035 1.49546 1.05871 0.86961 0.83941 0.79323 0.78647 1.20053 1.22385 1.19025 1.22645 0.84146 1.01183 0.93137 1.84798 0.89423 1.78846 1.04994 0.92309 0.92112 0.92258 0.91027 0.91021 0.88260 0.87971 0.92061 0.89077 0.91612 0.92199 0.92492 0.92248 0.92542 0.90355 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.91 37.16 0.37 -0.11 16 2 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 3 C -0.04 -0.16 5.82 -27.88 -0.16 -0.33 16 4 C 0.04 0.36 6.87 -13.88 -0.10 0.26 16 5 N -0.22 -2.71 12.07 33.21 0.40 -2.31 16 6 N -0.50 -7.74 6.57 29.39 0.19 -7.54 16 7 H 0.46 8.33 5.82 -184.20 -1.07 7.26 16 8 C 0.36 5.37 7.94 -89.32 -0.71 4.66 16 9 N -0.60 -10.81 9.04 -18.27 -0.17 -10.98 16 10 C 0.67 14.50 8.21 -87.99 -0.72 13.78 16 11 O -0.63 -15.06 12.96 5.02 0.07 -15.00 16 12 N -0.58 -12.38 2.97 -178.78 -0.53 -12.91 16 13 C 0.12 2.00 6.43 -3.71 -0.02 1.98 16 14 C -0.14 -2.27 6.08 -26.62 -0.16 -2.43 16 15 C -0.10 -2.03 5.11 -26.69 -0.14 -2.16 16 16 C 0.00 0.11 1.84 -91.63 -0.17 -0.06 16 17 H 0.03 0.77 7.21 -51.93 -0.37 0.40 16 18 C -0.51 -14.72 9.15 -34.44 -0.31 -15.03 16 19 H 0.08 2.38 7.99 -52.48 -0.42 1.96 16 20 C 0.07 2.17 5.45 -17.82 -0.10 2.07 16 21 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 22 Si 0.88 24.15 24.31 -169.99 -4.13 20.02 16 23 H -0.27 -7.58 6.92 56.52 0.39 -7.19 16 24 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 25 H -0.27 -7.38 6.53 56.52 0.37 -7.01 16 26 C 0.11 2.66 5.11 -3.70 -0.02 2.64 16 27 S 0.19 1.73 23.13 -107.50 -2.49 -0.75 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.42 6.85 -51.93 -0.36 1.06 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 42 H 0.08 2.10 2.32 -51.93 -0.12 1.98 16 43 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -35.42 353.74 -9.97 -45.39 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.02 Total: 1.45 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -2.40 Total: 4.58 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.67 Total: -61.00 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.07 Total: -15.00 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -4.13 Total: 20.02 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.49 Total: -0.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.42 -9.97 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596655286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.972 kcal (2) G-P(sol) polarization free energy of solvation -35.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds