Wall clock time and date at job start Tue Mar 31 2020 13:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47524 * 2 1 4 4 C 1.50705 * 109.47294 * 179.97438 * 3 2 1 5 5 N 1.27971 * 125.04919 * 89.97622 * 4 3 2 6 6 N 1.37935 * 115.11741 * 180.02562 * 5 4 3 7 7 H 0.97001 * 122.81523 * 179.97438 * 6 5 4 8 8 C 1.33677 * 114.37891 * 0.02562 * 6 5 4 9 9 N 1.33178 * 125.24281 * 179.97438 * 8 6 5 10 10 C 1.33570 * 120.00030 * 5.86644 * 9 8 6 11 11 O 1.21891 * 120.00032 * 354.69825 * 10 9 8 12 12 N 1.34780 * 120.00497 * 174.69722 * 10 9 8 13 13 C 1.46924 * 120.62499 * 0.02562 * 12 10 9 14 14 C 1.53190 * 108.77438 * 126.37353 * 13 12 10 15 15 C 1.53033 * 109.31691 * 54.62980 * 14 13 12 16 16 C 1.53041 * 109.53916 * 298.64091 * 15 14 13 17 17 H 1.08998 * 109.49870 * 301.40734 * 16 15 14 18 18 C 1.50702 * 109.49869 * 181.31128 * 16 15 14 19 19 H 1.08009 * 119.99892 * 0.15999 * 18 16 15 20 20 C 1.37875 * 120.00160 * 180.16024 * 18 16 15 21 21 N 1.31520 * 120.00181 * 179.97438 * 20 18 16 22 22 Si 1.86793 * 119.99988 * 0.02562 * 20 18 16 23 23 H 1.48499 * 109.47538 * 89.99882 * 22 20 18 24 24 H 1.48503 * 109.47448 * 210.00086 * 22 20 18 25 25 H 1.48505 * 109.47098 * 329.99723 * 22 20 18 26 26 C 1.46923 * 120.63321 * 180.02562 * 12 10 9 27 27 S 1.70870 * 109.51984 * 0.26145 * 8 6 5 28 28 H 1.09002 * 109.47011 * 59.99601 * 1 2 3 29 29 H 1.08998 * 109.47217 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46722 * 299.99840 * 1 2 3 31 31 H 1.09000 * 109.47095 * 240.00289 * 2 1 3 32 32 H 1.08999 * 109.47499 * 120.00541 * 2 1 3 33 33 H 1.09006 * 109.46991 * 60.00324 * 3 2 1 34 34 H 1.08999 * 109.47175 * 300.00740 * 3 2 1 35 35 H 1.09002 * 109.58793 * 246.15903 * 13 12 10 36 36 H 1.09005 * 109.58936 * 6.58463 * 13 12 10 37 37 H 1.09004 * 109.50304 * 174.58488 * 14 13 12 38 38 H 1.09003 * 109.49874 * 294.68241 * 14 13 12 39 39 H 1.09005 * 109.45824 * 58.65980 * 15 14 13 40 40 H 1.09000 * 109.46704 * 178.63036 * 15 14 13 41 41 H 0.96998 * 119.99966 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.58746 * 353.41830 * 26 12 10 43 43 H 1.09007 * 109.58570 * 113.84312 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.2825 1.4418 -1.0467 6 7 5.6411 1.4413 -0.8082 7 1 6.2998 1.4404 -1.5203 8 6 5.9740 1.4410 0.4864 9 7 7.2188 1.4401 0.9598 10 6 8.2522 1.5575 0.1216 11 8 8.0622 1.5683 -1.0824 12 7 9.5050 1.6641 0.6070 13 6 9.7500 1.6521 2.0556 14 6 10.7862 0.5690 2.3715 15 6 12.0387 0.8042 1.5241 16 6 11.6777 0.7093 0.0399 17 1 11.2528 -0.2724 -0.1692 18 6 12.9176 0.9092 -0.7931 19 1 13.8689 1.0836 -0.3122 20 6 12.8377 0.8693 -2.1689 21 7 13.9197 1.0441 -2.8959 22 14 11.1924 0.5683 -3.0005 23 1 10.5172 1.8677 -3.2470 24 1 11.4113 -0.1288 -4.2934 25 1 10.3405 -0.2735 -2.1224 26 6 10.6516 1.7945 -0.3024 27 16 4.5565 1.4340 1.4405 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 10.1300 2.6242 2.3701 36 1 8.8206 1.4332 2.5816 37 1 11.0485 0.6135 3.4285 38 1 10.3697 -0.4115 2.1405 39 1 12.4407 1.7947 1.7375 40 1 12.7870 0.0491 1.7646 41 1 13.8635 1.0157 -3.8638 42 1 10.3172 1.6697 -1.3322 43 1 11.1050 2.7782 -0.1799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596655286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:54 Heat of formation + Delta-G solvation = 20.415526 kcal Electronic energy + Delta-G solvation = -25230.799936 eV Core-core repulsion = 21630.784586 eV Total energy + Delta-G solvation = -3600.015350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23374 -40.94858 -38.90628 -36.77456 -35.43381 -35.10419 -33.74174 -32.36517 -32.05663 -28.63898 -27.49003 -26.93518 -25.70157 -23.60255 -23.27908 -22.34360 -21.34432 -20.57643 -20.16303 -19.05466 -18.65575 -17.91748 -17.28034 -17.16568 -16.46832 -16.14874 -15.81911 -15.73721 -15.43282 -15.27856 -15.02774 -14.69346 -14.35647 -14.11250 -13.99237 -13.80823 -13.25858 -13.14437 -12.98691 -12.96712 -12.57729 -12.52617 -12.39570 -12.18932 -11.99584 -11.83642 -11.71820 -11.64933 -11.47969 -11.23511 -11.12129 -11.00886 -10.86571 -10.59437 -9.90797 -9.22546 -8.45178 -6.46126 -0.66062 -0.45957 0.04247 0.34991 1.14746 1.20354 1.22154 1.34334 1.89778 2.14461 2.32078 2.91461 3.15552 3.62873 3.80270 4.03688 4.05932 4.11502 4.13047 4.17428 4.37914 4.48746 4.55115 4.59953 4.69357 4.73547 4.81588 4.92278 4.93338 4.97517 5.06755 5.13794 5.19169 5.28843 5.32202 5.39535 5.47550 5.51422 5.57664 5.67056 5.93115 6.08788 6.21261 6.48957 6.62172 7.19005 7.34710 8.70798 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.003168 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.266864 B = 8837.088412 C = 9863.244360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.037 4.037 4 C 0.061 3.939 5 N -0.255 5.255 6 N -0.514 5.514 7 H 0.448 0.552 8 C 0.327 3.673 9 N -0.620 5.620 10 C 0.661 3.339 11 O -0.670 6.670 12 N -0.593 5.593 13 C 0.116 3.884 14 C -0.125 4.125 15 C -0.097 4.097 16 C 0.005 3.995 17 H 0.009 0.991 18 C -0.508 4.508 19 H 0.056 0.944 20 C 0.031 3.969 21 N -0.933 5.933 22 Si 0.939 3.061 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.118 3.882 27 S 0.282 5.718 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.268 0.732 42 H 0.049 0.951 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.606 0.856 14.628 34.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.079 4.079 4 C -0.239 4.239 5 N -0.070 5.070 6 N -0.253 5.253 7 H 0.306 0.694 8 C -0.051 4.051 9 N -0.382 5.382 10 C 0.360 3.640 11 O -0.556 6.556 12 N -0.324 5.324 13 C -0.005 4.005 14 C -0.163 4.163 15 C -0.135 4.135 16 C -0.015 4.015 17 H 0.027 0.973 18 C -0.547 4.547 19 H 0.074 0.926 20 C -0.168 4.168 21 N -0.573 5.573 22 Si 0.770 3.230 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.005 4.005 27 S 0.518 5.482 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -31.357 0.831 14.717 34.649 hybrid contribution 1.008 -0.127 -3.117 3.279 sum -30.349 0.704 11.600 32.498 Atomic orbital electron populations 1.21742 0.93289 1.02594 1.03063 1.21585 0.97640 0.93980 1.02990 1.20780 0.78873 1.00452 1.07777 1.29333 1.03891 0.99567 0.91112 1.74262 0.88494 1.18213 1.26050 1.48382 1.04914 1.63702 1.08289 0.69381 1.25774 1.01661 0.90017 0.87668 1.69437 0.94085 1.40645 1.34067 1.17492 0.84945 0.77498 0.84082 1.90474 1.85063 1.60677 1.19355 1.47365 1.03686 1.72095 1.09216 1.21921 1.01007 0.99866 0.77712 1.21941 0.94886 0.98188 1.01282 1.21390 0.97440 1.01729 0.92929 1.19438 0.92732 0.93219 0.96100 0.97322 1.21291 0.94551 1.47931 0.90929 0.92583 1.25573 0.98125 0.94714 0.98383 1.69972 1.29430 1.51636 1.06302 0.86051 0.80867 0.78418 0.77699 1.21016 1.21789 1.20289 1.22152 0.85263 1.00557 0.92502 1.84536 0.85147 1.75919 1.02616 0.92169 0.92297 0.90791 0.92745 0.90468 0.84653 0.86874 0.90345 0.87191 0.87215 0.93073 0.91875 0.92167 0.92265 0.93291 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.91 71.98 0.71 0.26 16 2 C -0.12 -0.68 5.92 30.59 0.18 -0.50 16 3 C -0.04 -0.19 5.82 29.85 0.17 -0.02 16 4 C 0.06 0.87 6.87 88.67 0.61 1.48 16 5 N -0.25 -5.90 12.07 -48.73 -0.59 -6.49 16 6 N -0.51 -15.92 6.57 -60.92 -0.40 -16.32 16 7 H 0.45 16.89 5.82 -214.69 -1.25 15.64 16 8 C 0.33 9.51 7.94 179.89 1.43 10.94 16 9 N -0.62 -21.79 9.04 -330.52 -2.99 -24.78 16 10 C 0.66 28.98 8.21 179.43 1.47 30.45 16 11 O -0.67 -33.34 12.96 -4.96 -0.06 -33.40 16 12 N -0.59 -25.23 2.97 -837.67 -2.49 -27.72 16 13 C 0.12 3.70 6.43 86.36 0.56 4.26 16 14 C -0.13 -3.85 6.08 30.67 0.19 -3.66 16 15 C -0.10 -3.81 5.11 30.62 0.16 -3.66 16 16 C 0.00 0.24 1.84 -11.45 -0.02 0.22 16 17 H 0.01 0.47 7.21 -2.39 -0.02 0.45 16 18 C -0.51 -29.99 9.15 25.60 0.23 -29.76 16 19 H 0.06 3.50 7.99 -2.91 -0.02 3.48 16 20 C 0.03 1.91 5.45 84.65 0.46 2.37 16 21 N -0.93 -60.09 13.96 21.45 0.30 -59.79 16 22 Si 0.94 52.64 24.31 68.60 1.67 54.31 16 23 H -0.28 -16.11 6.92 99.48 0.69 -15.42 16 24 H -0.29 -15.74 7.11 99.48 0.71 -15.03 16 25 H -0.28 -15.90 6.53 99.48 0.65 -15.25 16 26 C 0.12 5.84 5.11 86.37 0.44 6.28 16 27 S 0.28 4.29 23.13 -56.49 -1.31 2.99 16 28 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.14 -0.17 8.14 -2.38 -0.02 -0.19 16 34 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.11 3.12 6.85 -2.38 -0.02 3.10 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.27 16.27 8.31 -92.71 -0.77 15.49 16 42 H 0.05 2.71 2.32 -2.39 -0.01 2.71 16 43 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -82.15 353.74 0.43 -81.72 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -0.29 Total: 10.81 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 6.59 Total: 18.67 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -6.17 Total: -135.09 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.06 Total: -33.40 kcal Atomic # 14 Polarization: 52.64 SS G_CDS: 1.67 Total: 54.31 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.31 Total: 2.99 kcal Total: -82.15 0.43 -81.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596655286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.135 kcal (2) G-P(sol) polarization free energy of solvation -82.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds