Wall clock time and date at job start Tue Mar 31 2020 14:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 120.00190 * 2 1 4 4 C 1.52995 * 109.46859 * 124.99324 * 3 2 1 5 5 S 1.81403 * 109.46738 * 179.97438 * 4 3 2 6 6 C 1.81403 * 103.00103 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47190 * 179.97438 * 6 5 4 8 8 N 1.46495 * 109.46738 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99663 * 179.97438 * 8 7 6 10 10 O 1.21843 * 120.00114 * 0.02562 * 9 8 7 11 11 N 1.33832 * 120.00147 * 180.27726 * 9 8 7 12 12 C 1.32931 * 120.00335 * 179.72624 * 11 9 8 13 13 C 1.41206 * 126.38025 * 0.02599 * 12 11 9 14 14 C 1.34956 * 108.25105 * 179.97438 * 13 12 11 15 15 N 1.36454 * 108.94396 * 359.97438 * 14 13 12 16 16 C 1.46497 * 125.85130 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46839 * 84.98263 * 16 15 14 18 18 H 1.07998 * 120.00121 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00297 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00421 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47236 * 89.99885 * 21 19 17 23 23 H 1.48496 * 109.47453 * 210.00160 * 21 19 17 24 24 H 1.48500 * 109.47342 * 330.00463 * 21 19 17 25 25 N 1.37423 * 126.38130 * 179.71062 * 12 11 9 26 26 H 0.97004 * 126.36573 * 0.03671 * 25 12 11 27 27 H 1.07999 * 119.99815 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00054 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99578 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46693 * 4.99515 * 3 2 1 31 31 H 1.08994 * 109.46585 * 244.99581 * 3 2 1 32 32 H 1.09005 * 109.47312 * 60.00571 * 4 3 2 33 33 H 1.08994 * 109.47732 * 299.99555 * 4 3 2 34 34 H 1.09006 * 109.46776 * 60.00127 * 6 5 4 35 35 H 1.08997 * 109.46971 * 300.00185 * 6 5 4 36 36 H 1.09007 * 109.46621 * 60.00108 * 7 6 5 37 37 H 1.08997 * 109.46991 * 300.00360 * 7 6 5 38 38 H 0.97000 * 120.00601 * 0.02562 * 8 7 6 39 39 H 1.08006 * 125.87181 * 359.92613 * 13 12 11 40 40 H 1.07998 * 125.52710 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47563 * 204.97521 * 16 15 14 42 42 H 1.08996 * 109.47475 * 324.98421 * 16 15 14 43 43 H 0.97002 * 120.00446 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 16 3.9426 2.9037 1.1812 6 6 5.0250 2.7500 2.6288 7 6 5.8717 4.0166 2.7693 8 7 6.7453 3.8926 3.9387 9 6 7.5866 4.8952 4.2606 10 8 7.6202 5.9048 3.5792 11 7 8.3888 4.7797 5.3256 12 6 9.2224 5.7663 5.6400 13 6 9.3722 6.9885 4.9488 14 6 10.3149 7.7187 5.5809 15 7 10.7770 7.0126 6.6532 16 6 11.8068 7.4586 7.5949 17 6 11.1726 8.3027 8.6701 18 1 10.1088 8.4887 8.6535 19 6 11.9502 8.8376 9.6752 20 7 13.2454 8.6107 9.6958 21 14 11.1641 9.8844 11.0077 22 1 10.7426 9.0154 12.1358 23 1 12.1466 10.8858 11.4946 24 1 9.9780 10.5842 10.4522 25 7 10.0948 5.7892 6.7016 26 1 10.2170 5.0882 7.3608 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4024 -0.9313 32 1 3.7400 0.5065 1.0922 33 1 2.4772 1.2357 2.1130 34 1 5.6798 1.8877 2.5029 35 1 4.4176 2.6174 3.5241 36 1 5.2171 4.8791 2.8950 37 1 6.4790 4.1488 1.8739 38 1 6.7189 3.0888 4.4809 39 1 8.8268 7.2871 4.0657 40 1 10.6487 8.7026 5.2863 41 1 12.2845 6.5905 8.0490 42 1 12.5541 8.0481 7.0637 43 1 13.7927 8.9872 10.4027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596753710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:02 Heat of formation + Delta-G solvation = 81.310147 kcal Electronic energy + Delta-G solvation = -22852.014933 eV Core-core repulsion = 19254.640172 eV Total energy + Delta-G solvation = -3597.374761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.76370 -38.86133 -36.13043 -35.30034 -34.07808 -32.90126 -31.04762 -30.99390 -30.87647 -29.94984 -26.66618 -24.56017 -23.48871 -22.73006 -21.48078 -21.15962 -20.28753 -19.80918 -17.47237 -16.92713 -16.46534 -16.13607 -16.09281 -15.75490 -15.58543 -14.97865 -14.85806 -14.65989 -14.47803 -14.12716 -13.80283 -13.63533 -13.22934 -13.09548 -12.78298 -12.57829 -12.51779 -12.19451 -11.96343 -11.87523 -11.62371 -11.35660 -11.30335 -11.06258 -10.53152 -10.39405 -10.28815 -9.85404 -9.72545 -9.56090 -9.01834 -8.91514 -8.63973 -8.36403 -7.96626 -6.88790 -6.47806 -4.64909 1.18033 1.79797 1.82491 2.10401 2.25548 3.06111 3.14022 3.15979 3.19625 3.72781 4.07229 4.35010 4.48742 4.53021 4.57361 4.61281 4.65613 4.74982 4.80218 4.82208 5.07665 5.20069 5.29118 5.29789 5.45223 5.56955 5.71035 5.77562 5.88398 6.01569 6.13929 6.24043 6.26540 6.54215 6.57208 6.72697 7.02818 7.36546 7.40571 7.52363 7.63945 7.86474 8.28178 8.42653 8.46941 9.05784 9.61024 10.53249 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.038562 B = 0.001509 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.926956 B =18548.770549 C =18796.784158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C -0.078 4.078 4 C -0.083 4.083 5 S -0.244 6.244 6 C -0.100 4.100 7 C 0.158 3.842 8 N -0.730 5.730 9 C 0.686 3.314 10 O -0.630 6.630 11 N -0.714 5.714 12 C 0.487 3.513 13 C -0.334 4.334 14 C 0.162 3.838 15 N -0.346 5.346 16 C 0.255 3.745 17 C -0.558 4.558 18 H 0.070 0.930 19 C 0.070 3.930 20 N -0.887 5.887 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.270 1.270 25 N -0.471 5.471 26 H 0.444 0.556 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.396 0.604 39 H 0.183 0.817 40 H 0.187 0.813 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.351 -13.540 -13.631 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.232 4.232 5 S -0.017 6.017 6 C -0.248 4.248 7 C 0.032 3.968 8 N -0.386 5.386 9 C 0.385 3.615 10 O -0.512 6.512 11 N -0.479 5.479 12 C 0.233 3.767 13 C -0.367 4.367 14 C 0.017 3.983 15 N -0.132 5.132 16 C 0.139 3.861 17 C -0.596 4.596 18 H 0.088 0.912 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.736 3.264 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.194 1.194 25 N -0.194 5.194 26 H 0.291 0.709 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.230 0.770 39 H 0.200 0.800 40 H 0.204 0.796 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.056 -12.638 -14.016 24.142 hybrid contribution -0.139 -0.729 1.986 2.120 sum -15.195 -13.367 -12.031 23.544 Atomic orbital electron populations 1.23921 0.95906 1.02109 1.00583 1.22876 0.95991 0.97998 1.00341 1.20473 0.97517 0.96183 0.97479 1.23346 1.00303 0.97110 1.02427 1.86970 1.49535 1.26293 1.38886 1.23541 1.00207 1.02439 0.98659 1.20611 0.91905 0.94914 0.89374 1.44615 1.42538 1.20734 1.30730 1.16569 0.80388 0.81849 0.82696 1.90741 1.72697 1.30622 1.57120 1.68020 1.20699 1.31585 1.27590 1.18691 0.84601 0.90157 0.83236 1.22396 1.08765 0.96475 1.09027 1.22808 0.93246 0.96734 0.85492 1.47983 1.33707 1.05081 1.26388 1.20035 0.83056 0.96356 0.86687 1.21431 0.95620 1.33048 1.09545 0.91211 1.24948 0.94755 0.95941 0.97824 1.69897 1.04646 1.43969 1.33867 0.86298 0.79215 0.79837 0.81090 1.20228 1.20676 1.19421 1.44439 1.35561 1.11229 1.28164 0.70898 0.88379 0.88305 0.87170 0.90409 0.89898 0.89879 0.89904 0.89421 0.89413 0.91239 0.91234 0.77017 0.79984 0.79609 0.93117 0.91394 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.98 14.32 29.01 0.42 -0.56 16 2 C -0.15 -0.84 9.52 -36.03 -0.34 -1.18 16 3 C -0.08 -0.48 5.66 -27.89 -0.16 -0.64 16 4 C -0.08 -0.57 5.92 37.15 0.22 -0.35 16 5 S -0.24 -2.33 21.74 -107.50 -2.34 -4.67 16 6 C -0.10 -0.94 6.05 37.16 0.22 -0.71 16 7 C 0.16 2.06 5.68 -4.04 -0.02 2.04 16 8 N -0.73 -11.11 5.56 -65.42 -0.36 -11.48 16 9 C 0.69 13.61 8.47 -87.76 -0.74 12.87 16 10 O -0.63 -13.98 13.26 5.06 0.07 -13.91 16 11 N -0.71 -14.23 10.59 -15.79 -0.17 -14.40 16 12 C 0.49 9.58 8.07 -155.29 -1.25 8.32 16 13 C -0.33 -6.35 9.52 -39.62 -0.38 -6.73 16 14 C 0.16 2.78 11.45 -16.66 -0.19 2.59 16 15 N -0.35 -6.46 3.63 -62.25 -0.23 -6.68 16 16 C 0.25 5.32 6.19 -5.20 -0.03 5.29 16 17 C -0.56 -13.31 9.39 -34.44 -0.32 -13.63 16 18 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -22.54 13.29 55.43 0.74 -21.80 16 21 Si 0.91 19.30 29.54 -169.99 -5.02 14.27 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 N -0.47 -8.48 7.38 31.33 0.23 -8.25 16 26 H 0.44 7.02 8.96 -182.54 -1.64 5.39 16 27 H 0.10 0.48 7.84 -52.49 -0.41 0.07 16 28 H 0.10 0.42 8.06 -52.48 -0.42 -0.01 16 29 H 0.11 0.51 8.06 -52.48 -0.42 0.09 16 30 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.40 5.14 8.57 -40.82 -0.35 4.79 16 39 H 0.18 3.67 5.77 -52.48 -0.30 3.37 16 40 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -29.66 384.54 -11.69 -41.35 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.72 Total: 10.84 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -2.68 Total: 8.92 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.21 Total: -62.61 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.91 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.34 Total: -4.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.66 -11.69 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596753710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.664 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds