Wall clock time and date at job start Tue Mar 31 2020 14:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 H 1.09004 * 109.47142 * 55.00674 * 3 2 1 5 5 N 1.46495 * 109.47580 * 294.99816 * 3 2 1 6 6 C 1.34782 * 119.99747 * 84.99934 * 5 3 2 7 7 O 1.21287 * 119.99986 * 0.02562 * 6 5 3 8 8 C 1.50701 * 120.00274 * 180.02562 * 6 5 3 9 9 N 1.46898 * 109.47114 * 180.02562 * 8 6 5 10 10 C 1.46900 * 110.99879 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.46969 * 325.00430 * 10 9 8 12 12 C 1.53003 * 109.46944 * 84.99968 * 10 9 8 13 13 C 1.50696 * 109.47334 * 205.00411 * 10 9 8 14 14 H 1.08000 * 120.00075 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99860 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00170 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99848 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47245 * 89.99382 * 17 15 13 19 19 H 1.48501 * 109.47456 * 209.99605 * 17 15 13 20 20 H 1.48508 * 109.47282 * 329.99771 * 17 15 13 21 21 C 1.50706 * 109.47076 * 174.99976 * 3 2 1 22 22 C 1.38244 * 119.98773 * 260.00301 * 21 3 2 23 23 C 1.38217 * 120.01084 * 180.02562 * 22 21 3 24 24 C 1.38351 * 119.98541 * 0.25893 * 23 22 21 25 25 Cl 1.73604 * 120.00786 * 179.69323 * 24 23 22 26 26 C 1.38348 * 119.97455 * 359.46866 * 24 23 22 27 27 C 1.38212 * 119.98576 * 0.54994 * 26 24 23 28 28 H 1.08999 * 109.47115 * 299.99642 * 1 2 3 29 29 H 1.09001 * 109.47415 * 59.99948 * 1 2 3 30 30 H 1.09008 * 109.47324 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47115 * 240.00358 * 2 1 3 32 32 H 1.08993 * 109.47316 * 120.00379 * 2 1 3 33 33 H 0.97000 * 120.00810 * 265.00061 * 5 3 2 34 34 H 1.08999 * 109.46733 * 300.00249 * 8 6 5 35 35 H 1.08999 * 109.47030 * 60.00018 * 8 6 5 36 36 H 1.00894 * 111.00136 * 303.95294 * 9 8 6 37 37 H 1.09001 * 109.47118 * 180.02562 * 12 10 9 38 38 H 1.08998 * 109.47047 * 300.00265 * 12 10 9 39 39 H 1.08999 * 109.47069 * 60.00180 * 12 10 9 40 40 H 0.97003 * 119.99886 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99331 * 0.02562 * 22 21 3 42 42 H 1.08002 * 120.00169 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00586 * 180.25470 * 26 24 23 44 44 H 1.08000 * 119.99226 * 179.72624 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4350 2.6644 -1.3669 7 8 -0.3395 2.6326 -0.4340 8 6 0.0360 3.3378 -2.6547 9 7 -1.3262 3.8724 -2.5262 10 6 -1.7495 4.5380 -3.7654 11 1 -0.8923 5.0306 -4.2244 12 6 -2.3192 3.4990 -4.7334 13 6 -2.8078 5.5631 -3.4488 14 1 -3.1337 5.7056 -2.4290 15 6 -3.3608 6.3183 -4.4611 16 7 -2.9644 6.1444 -5.7030 17 14 -4.6731 7.5884 -4.0688 18 1 -4.0278 8.8951 -3.7834 19 1 -5.5872 7.7310 -5.2304 20 1 -5.4478 7.1490 -2.8803 21 6 3.5418 1.4444 0.1238 22 6 4.1338 1.6873 1.3493 23 6 5.5112 1.6896 1.4633 24 6 6.2976 1.4542 0.3497 25 17 8.0279 1.4649 0.4906 26 6 5.7046 1.2056 -0.8753 27 6 4.3270 1.2039 -0.9881 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.2718 2.1233 -1.9978 34 1 0.7274 4.1531 -2.8677 35 1 0.0671 2.6131 -3.4684 36 1 -1.9764 3.1465 -2.2649 37 1 -2.6329 3.9928 -5.6531 38 1 -1.5537 2.7576 -4.9623 39 1 -3.1764 3.0064 -4.2744 40 1 -3.3532 6.6760 -6.4151 41 1 3.5198 1.8752 2.2177 42 1 5.9736 1.8798 2.4207 43 1 6.3179 1.0176 -1.7442 44 1 3.8640 1.0142 -1.9452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:55 Heat of formation + Delta-G solvation = -23.653410 kcal Electronic energy + Delta-G solvation = -24559.341758 eV Core-core repulsion = 20923.078978 eV Total energy + Delta-G solvation = -3636.262780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46092 -39.18819 -37.02358 -36.06310 -35.30698 -32.69137 -32.21167 -31.47134 -31.10031 -29.10225 -26.54446 -25.22068 -24.62153 -23.37579 -22.49064 -20.99059 -20.20733 -20.12848 -17.89498 -16.96667 -16.55100 -16.04544 -15.67068 -15.54405 -15.18262 -14.65585 -14.29998 -14.16136 -13.95308 -13.92742 -13.78901 -13.30380 -12.86318 -12.71232 -12.53094 -12.49510 -11.95548 -11.81814 -11.65740 -11.55107 -11.45553 -11.24151 -11.18250 -10.93164 -10.90918 -10.78863 -10.54091 -10.14454 -9.96165 -9.52708 -9.46244 -9.09691 -8.97661 -8.88639 -8.35370 -7.25526 -5.98225 -4.00640 0.68100 0.86566 1.74164 2.93879 3.08618 3.32292 3.35119 3.40925 3.46665 4.21823 4.34247 4.45964 4.46383 4.84571 4.88493 4.94200 5.02784 5.08474 5.24577 5.33507 5.34973 5.37764 5.46849 5.59272 5.71421 5.78512 5.80439 5.84523 5.87706 5.91786 6.03228 6.11765 6.34824 6.42542 6.52950 6.64029 6.81210 7.04659 7.26655 7.57520 7.72734 7.89387 8.24656 8.45842 8.53091 8.61210 9.07384 9.64683 11.09061 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.002222 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.752870 B =12597.183074 C =13214.380814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.185 3.815 4 H 0.099 0.901 5 N -0.735 5.735 6 C 0.515 3.485 7 O -0.516 6.516 8 C 0.043 3.957 9 N -0.667 5.667 10 C 0.212 3.788 11 H 0.034 0.966 12 C -0.170 4.170 13 C -0.492 4.492 14 H 0.064 0.936 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.082 4.082 22 C -0.095 4.095 23 C -0.107 4.107 24 C -0.037 4.037 25 Cl -0.073 7.073 26 C -0.106 4.106 27 C -0.101 4.101 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.397 0.603 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.335 0.665 37 H 0.090 0.910 38 H 0.004 0.996 39 H 0.029 0.971 40 H 0.259 0.741 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.688 -14.036 10.565 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.081 3.919 4 H 0.117 0.883 5 N -0.390 5.390 6 C 0.302 3.698 7 O -0.390 6.390 8 C -0.090 4.090 9 N -0.298 5.298 10 C 0.105 3.895 11 H 0.052 0.948 12 C -0.230 4.230 13 C -0.531 4.531 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.063 4.063 25 Cl -0.044 7.044 26 C -0.125 4.125 27 C -0.119 4.119 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.153 0.847 37 H 0.109 0.891 38 H 0.023 0.977 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.402 -13.375 11.383 26.171 hybrid contribution -0.207 -0.084 -0.933 0.960 sum 19.196 -13.459 10.450 25.668 Atomic orbital electron populations 1.21818 0.94200 1.00664 1.03631 1.21939 0.97397 0.94970 1.02181 1.19835 0.88806 0.94175 0.89133 0.88323 1.46198 1.17608 1.59381 1.15854 1.21031 0.80784 0.77276 0.90712 1.90689 1.50830 1.57157 1.40289 1.21808 0.96404 0.98500 0.92329 1.60573 0.99482 1.32518 1.37243 1.19224 0.95583 0.91406 0.83335 0.94805 1.22455 0.97973 0.97939 1.04598 1.21150 1.20002 1.17907 0.94074 0.91765 1.24946 0.97194 0.97469 0.94994 1.69877 1.43668 1.40965 0.99418 0.86481 0.81437 0.81655 0.77721 1.20768 1.21449 1.19875 1.20126 0.95461 0.98795 0.93845 1.21017 0.93933 0.98856 0.97552 1.21060 0.93397 1.00160 0.97926 1.20970 0.84639 1.05062 0.95659 1.98379 1.10719 1.97017 1.98298 1.21049 0.94986 1.00066 0.96356 1.20930 0.92697 0.99527 0.98794 0.91938 0.92047 0.93565 0.91823 0.91275 0.76841 0.88877 0.93576 0.84699 0.89098 0.97717 0.95172 0.93090 0.84674 0.84748 0.84738 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.51 37.15 0.32 -1.40 16 2 C -0.13 -1.19 5.59 -26.73 -0.15 -1.34 16 3 C 0.19 1.84 2.46 -69.08 -0.17 1.67 16 4 H 0.10 1.15 7.44 -51.93 -0.39 0.76 16 5 N -0.74 -8.09 4.98 -54.93 -0.27 -8.36 16 6 C 0.51 7.84 6.44 -10.98 -0.07 7.77 16 7 O -0.52 -9.51 13.34 5.55 0.07 -9.44 16 8 C 0.04 0.72 5.96 -4.98 -0.03 0.69 16 9 N -0.67 -14.39 5.86 -109.22 -0.64 -15.03 16 10 C 0.21 5.26 2.57 -68.87 -0.18 5.08 16 11 H 0.03 0.90 7.80 -51.92 -0.40 0.50 16 12 C -0.17 -4.01 8.94 37.16 0.33 -3.68 16 13 C -0.49 -13.73 8.84 -34.44 -0.30 -14.03 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 16 N -0.90 -25.53 11.32 55.43 0.63 -24.90 16 17 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.08 -0.69 4.96 -104.62 -0.52 -1.21 16 22 C -0.09 -0.75 9.67 -39.59 -0.38 -1.13 16 23 C -0.11 -0.82 9.83 -39.55 -0.39 -1.20 16 24 C -0.04 -0.30 6.32 -39.50 -0.25 -0.55 16 25 Cl -0.07 -0.58 28.96 -51.86 -1.50 -2.08 16 26 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16 27 C -0.10 -0.76 9.05 -39.59 -0.36 -1.12 16 28 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 29 H 0.06 0.86 5.65 -51.93 -0.29 0.56 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 3.44 6.87 -40.82 -0.28 3.16 16 34 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 35 H 0.05 0.71 7.44 -51.93 -0.39 0.33 16 36 H 0.34 7.24 8.17 -39.29 -0.32 6.91 16 37 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 38 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 39 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.14 0.87 8.04 -52.49 -0.42 0.45 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.13 0.78 6.91 -52.49 -0.36 0.42 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -30.68 372.12 -10.23 -40.90 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.47 Total: 6.86 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -2.63 Total: -10.22 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.29 Total: -48.29 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.68 -10.23 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.249 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds