Wall clock time and date at job start Tue Mar 31 2020 14:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47536 * 2 1 4 4 H 1.08995 * 109.46762 * 305.00296 * 3 2 1 5 5 N 1.46506 * 109.46710 * 64.99716 * 3 2 1 6 6 C 1.34773 * 119.99968 * 275.00042 * 5 3 2 7 7 O 1.21283 * 120.00360 * 359.73034 * 6 5 3 8 8 C 1.50706 * 120.00081 * 180.02562 * 6 5 3 9 9 N 1.46895 * 109.47182 * 179.72734 * 8 6 5 10 10 C 1.46901 * 110.99816 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.47326 * 325.00220 * 10 9 8 12 12 C 1.53001 * 109.46830 * 85.00098 * 10 9 8 13 13 C 1.50697 * 109.47359 * 204.99904 * 10 9 8 14 14 H 1.08009 * 119.99893 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00117 * 180.02562 * 13 10 9 16 16 N 1.31522 * 120.00023 * 179.97438 * 15 13 10 17 17 Si 1.86801 * 120.00041 * 359.97438 * 15 13 10 18 18 H 1.48499 * 109.47058 * 90.00107 * 17 15 13 19 19 H 1.48508 * 109.46792 * 210.00193 * 17 15 13 20 20 H 1.48497 * 109.46857 * 330.00255 * 17 15 13 21 21 C 1.50698 * 109.47696 * 184.99869 * 3 2 1 22 22 C 1.38236 * 119.98602 * 279.72847 * 21 3 2 23 23 C 1.38218 * 120.01523 * 179.72395 * 22 21 3 24 24 C 1.38358 * 119.98152 * 0.54574 * 23 22 21 25 25 Cl 1.73591 * 120.01183 * 179.70385 * 24 23 22 26 26 C 1.38350 * 119.97212 * 359.72489 * 24 23 22 27 27 C 1.38219 * 119.99036 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47201 * 300.00075 * 1 2 3 30 30 H 1.08996 * 109.46860 * 60.00376 * 1 2 3 31 31 H 1.08997 * 109.47201 * 239.99924 * 2 1 3 32 32 H 1.08999 * 109.47444 * 120.00081 * 2 1 3 33 33 H 0.96998 * 119.99507 * 95.00898 * 5 3 2 34 34 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 35 35 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 36 36 H 1.00899 * 111.00252 * 303.95531 * 9 8 6 37 37 H 1.09000 * 109.47208 * 180.02562 * 12 10 9 38 38 H 1.09003 * 109.47118 * 299.99543 * 12 10 9 39 39 H 1.08998 * 109.47489 * 59.99832 * 12 10 9 40 40 H 0.96999 * 120.00104 * 179.97438 * 16 15 13 41 41 H 1.08007 * 119.99371 * 359.97438 * 22 21 3 42 42 H 1.07994 * 120.00996 * 180.27187 * 23 22 21 43 43 H 1.07998 * 120.00415 * 179.97438 * 26 24 23 44 44 H 1.07995 * 119.99076 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4352 2.6644 1.3669 7 8 -0.3375 2.6366 0.4326 8 6 0.0366 3.3386 2.6545 9 7 -1.3233 3.8783 2.5240 10 6 -1.7467 4.5439 3.7633 11 1 -1.3309 4.0144 4.6204 12 6 -1.2438 5.9889 3.7635 13 6 -3.2512 4.5356 3.8493 14 1 -3.8346 4.0809 3.0622 15 6 -3.8829 5.1083 4.9327 16 7 -5.1960 5.1015 5.0075 17 14 -2.8739 5.8940 6.2944 18 1 -2.6513 7.3284 5.9808 19 1 -3.6039 5.7762 7.5823 20 1 -1.5645 5.2020 6.4024 21 6 3.5420 1.4443 -0.1238 22 6 4.3272 1.2086 0.9892 23 6 5.7047 1.2045 0.8752 24 6 6.2977 1.4476 -0.3510 25 17 8.0278 1.4502 -0.4935 26 6 5.5113 1.6889 -1.4634 27 6 4.1339 1.6876 -1.3491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 2.2720 2.1231 1.9978 34 1 0.0633 2.6133 3.4677 35 1 0.7310 4.1509 2.8693 36 1 -1.3897 4.5048 1.7359 37 1 -1.5575 6.4826 4.6832 38 1 -0.1556 5.9949 3.7014 39 1 -1.6596 6.5185 2.9064 40 1 -5.6405 5.5042 5.7699 41 1 3.8642 1.0236 1.9473 42 1 6.3180 1.0161 1.7439 43 1 5.9737 1.8791 -2.4207 44 1 3.5200 1.8756 -2.2175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:00 Heat of formation + Delta-G solvation = -14.100009 kcal Electronic energy + Delta-G solvation = -24626.567656 eV Core-core repulsion = 20990.719143 eV Total energy + Delta-G solvation = -3635.848513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52122 -39.26540 -37.08628 -36.26665 -35.45349 -32.70101 -32.22279 -31.51999 -31.13992 -29.89839 -26.72734 -25.31618 -24.71555 -23.42916 -22.50402 -21.04100 -20.24093 -20.22959 -17.96765 -17.04802 -16.70542 -16.34394 -15.68227 -15.60548 -15.29447 -14.81727 -14.62677 -14.19849 -14.03326 -13.97745 -13.59041 -13.47158 -13.15003 -12.79572 -12.64574 -12.57556 -12.31546 -12.00324 -11.91009 -11.80373 -11.52211 -11.45868 -11.27739 -11.20817 -11.04071 -10.87267 -10.57536 -10.14523 -9.66774 -9.52262 -9.48225 -9.20143 -9.09205 -8.94129 -8.56688 -7.46548 -6.03182 -4.00769 0.62958 0.81371 1.69539 2.85359 3.01197 3.24745 3.25823 3.32678 3.37440 4.17676 4.29160 4.39858 4.41109 4.80621 4.83614 4.88128 4.99002 5.03146 5.12407 5.19168 5.26011 5.34489 5.42470 5.56476 5.63834 5.70030 5.71753 5.75480 5.76119 5.96558 6.01413 6.12433 6.14493 6.24598 6.29823 6.44685 6.46134 6.52640 6.66061 7.07455 7.45824 7.68146 7.87005 8.26381 8.42463 8.69489 9.10402 9.58490 11.10380 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.002340 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.076147 B =11962.473072 C =12888.095553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.186 3.814 4 H 0.099 0.901 5 N -0.735 5.735 6 C 0.515 3.485 7 O -0.512 6.512 8 C 0.039 3.961 9 N -0.654 5.654 10 C 0.184 3.816 11 H 0.034 0.966 12 C -0.184 4.184 13 C -0.497 4.497 14 H 0.083 0.917 15 C 0.066 3.934 16 N -0.900 5.900 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.270 1.270 21 C -0.082 4.082 22 C -0.101 4.101 23 C -0.106 4.106 24 C -0.037 4.037 25 Cl -0.073 7.073 26 C -0.107 4.107 27 C -0.095 4.095 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.341 0.659 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.056 0.944 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.156 -9.236 -10.625 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C 0.081 3.919 4 H 0.117 0.883 5 N -0.390 5.390 6 C 0.302 3.698 7 O -0.386 6.386 8 C -0.094 4.094 9 N -0.286 5.286 10 C 0.075 3.925 11 H 0.052 0.948 12 C -0.243 4.243 13 C -0.535 4.535 14 H 0.102 0.898 15 C -0.135 4.135 16 N -0.539 5.539 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.224 1.224 20 H -0.195 1.195 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.064 4.064 25 Cl -0.044 7.044 26 C -0.125 4.125 27 C -0.114 4.114 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.160 0.840 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 25.234 -9.793 -11.057 29.239 hybrid contribution 1.612 1.367 1.219 2.440 sum 26.846 -8.426 -9.838 29.808 Atomic orbital electron populations 1.21827 0.93901 1.00872 1.03859 1.21945 0.97603 0.94765 1.02175 1.19847 0.88752 0.94370 0.88935 0.88344 1.46180 1.17403 1.59486 1.15943 1.20904 0.80605 0.77916 0.90421 1.90712 1.50360 1.57352 1.40167 1.21862 0.93684 0.99188 0.94667 1.60369 1.18265 1.42845 1.07086 1.19682 0.97220 0.87803 0.87752 0.94793 1.22888 0.97650 1.02137 1.01651 1.20965 0.88509 1.36597 1.07469 0.89848 1.24952 0.94773 0.96008 0.97762 1.69887 1.07687 1.45582 1.30694 0.86890 0.80144 0.79667 0.81552 1.20803 1.22434 1.19543 1.20126 0.95462 0.98814 0.93837 1.20936 0.92694 0.99550 0.98813 1.21054 0.94991 1.00066 0.96347 1.20976 0.84678 1.05045 0.95660 1.98380 1.10688 1.97012 1.98285 1.21064 0.93401 1.00121 0.97943 1.21016 0.93932 0.98891 0.97546 0.93491 0.91596 0.92051 0.91321 0.91792 0.76860 0.88674 0.93508 0.84006 0.93511 0.95590 0.92532 0.92685 0.84963 0.84741 0.84737 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.52 37.16 0.32 -1.49 16 2 C -0.13 -1.18 5.59 -26.73 -0.15 -1.33 16 3 C 0.19 1.75 2.46 -69.08 -0.17 1.58 16 4 H 0.10 1.08 7.43 -51.93 -0.39 0.69 16 5 N -0.73 -7.52 4.98 -54.93 -0.27 -7.79 16 6 C 0.51 7.39 6.43 -10.98 -0.07 7.32 16 7 O -0.51 -9.12 13.36 5.56 0.07 -9.05 16 8 C 0.04 0.60 5.97 -4.98 -0.03 0.57 16 9 N -0.65 -13.37 5.86 -109.22 -0.64 -14.01 16 10 C 0.18 4.25 2.17 -68.87 -0.15 4.10 16 11 H 0.03 0.79 6.86 -51.93 -0.36 0.44 16 12 C -0.18 -3.87 8.64 37.16 0.32 -3.55 16 13 C -0.50 -14.04 9.42 -34.44 -0.32 -14.37 16 14 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 15 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 16 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 17 Si 0.89 21.63 24.37 -169.99 -4.14 17.48 16 18 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 19 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 20 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 21 C -0.08 -0.64 4.96 -104.62 -0.52 -1.16 16 22 C -0.10 -0.71 9.06 -39.59 -0.36 -1.07 16 23 C -0.11 -0.75 9.83 -39.54 -0.39 -1.14 16 24 C -0.04 -0.28 6.32 -39.50 -0.25 -0.53 16 25 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.05 16 26 C -0.11 -0.76 9.83 -39.55 -0.39 -1.15 16 27 C -0.10 -0.69 9.67 -39.59 -0.38 -1.08 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.98 5.65 -51.93 -0.29 0.68 16 30 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 3.08 6.85 -40.82 -0.28 2.80 16 34 H 0.10 1.38 8.05 -51.93 -0.42 0.96 16 35 H 0.05 0.64 7.44 -51.93 -0.39 0.26 16 36 H 0.34 6.97 8.17 -39.29 -0.32 6.65 16 37 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 38 H 0.03 0.45 7.45 -51.93 -0.39 0.07 16 39 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.13 0.71 6.90 -52.48 -0.36 0.35 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.14 0.80 8.04 -52.49 -0.42 0.38 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -32.33 365.29 -9.17 -41.50 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.33 Total: 6.76 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.64 Total: -11.48 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.14 Total: -48.68 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.48 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.33 -9.17 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.403 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds