Wall clock time and date at job start Tue Mar 31 2020 14:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99687 * 2 1 4 4 C 1.50692 * 120.00161 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.47238 * 4.99821 * 4 2 1 6 6 N 1.46901 * 109.47391 * 124.99998 * 4 2 1 7 7 C 1.46895 * 110.99816 * 275.00035 * 6 4 2 8 8 C 1.50706 * 109.47182 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99503 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72734 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 C 1.50690 * 109.47072 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00210 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99820 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00036 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47177 * 59.99528 * 16 14 12 18 18 H 1.48496 * 109.46992 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46935 * 299.99881 * 16 14 12 20 20 C 1.50705 * 109.47358 * 245.00028 * 4 2 1 21 21 C 1.38264 * 119.96445 * 99.99548 * 20 4 2 22 22 C 1.38205 * 120.06734 * 180.02562 * 21 20 4 23 23 C 1.38409 * 120.00369 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.03601 * 180.02562 * 23 22 21 25 25 C 1.38648 * 119.93131 * 359.97438 * 23 22 21 26 26 F 1.35103 * 120.04006 * 180.02562 * 25 23 22 27 27 C 1.38206 * 119.96279 * 279.73105 * 20 4 2 28 28 H 1.07998 * 119.99613 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99961 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46913 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47602 * 300.00023 * 3 2 1 32 32 H 1.08997 * 109.47266 * 60.00123 * 3 2 1 33 33 H 1.00899 * 111.00258 * 151.04265 * 6 4 2 34 34 H 1.09001 * 109.47613 * 60.00104 * 7 6 4 35 35 H 1.08998 * 109.47678 * 300.00000 * 7 6 4 36 36 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 38 38 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 39 39 H 0.97005 * 119.99861 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.96396 * 359.97438 * 21 20 4 41 41 H 1.08003 * 119.99693 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.00492 * 359.96985 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 1 1.3586 -2.1316 -0.0905 6 7 2.9964 -1.3314 -1.1351 7 6 2.3249 -1.7911 -2.3581 8 6 3.3108 -1.8043 -3.4978 9 8 4.4599 -1.4648 -3.3095 10 7 2.9172 -2.1993 -4.7248 11 6 3.8758 -2.2127 -5.8326 12 6 3.1888 -2.6911 -7.0856 13 1 2.1428 -2.9588 -7.0593 14 6 3.8956 -2.7870 -8.2655 15 7 5.1691 -2.4606 -8.2976 16 14 3.0437 -3.3794 -9.8190 17 1 1.9204 -2.4652 -10.1469 18 1 4.0151 -3.3919 -10.9421 19 1 2.5184 -4.7514 -9.6029 20 6 2.8348 -1.4404 1.2871 21 6 2.3349 -2.2217 2.3125 22 6 3.0402 -2.3469 3.4945 23 6 4.2479 -1.6895 3.6529 24 9 4.9380 -1.8119 4.8078 25 6 4.7491 -0.9061 2.6246 26 9 5.9280 -0.2639 2.7766 27 6 4.0435 -0.7880 1.4396 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 3.1352 1.1060 0.0005 31 1 1.8002 1.8768 -0.8900 32 1 1.8002 1.8767 0.8900 33 1 3.8016 -1.9031 -0.9280 34 1 1.5031 -1.1161 -2.5970 35 1 1.9353 -2.7971 -2.2026 36 1 1.9994 -2.4753 -4.8743 37 1 4.2618 -1.2057 -5.9913 38 1 4.7002 -2.8839 -5.5917 39 1 5.6664 -2.5284 -9.1277 40 1 1.3921 -2.7338 2.1900 41 1 2.6485 -2.9571 4.2949 42 1 4.4353 -0.1818 0.6361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775725505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:33 Heat of formation + Delta-G solvation = -84.538208 kcal Electronic energy + Delta-G solvation = -26400.777090 eV Core-core repulsion = 22210.077467 eV Total energy + Delta-G solvation = -4190.699623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.70612 -48.77769 -40.08719 -38.79518 -36.98034 -34.27358 -33.70132 -32.34509 -31.41227 -31.06495 -28.18083 -27.47583 -26.49315 -24.53161 -23.38184 -22.26411 -22.15335 -19.74654 -18.84913 -18.16583 -17.63427 -17.40426 -16.92847 -16.56264 -16.08992 -15.71396 -15.34047 -15.19095 -14.98374 -14.86679 -14.66557 -14.59939 -14.28191 -14.16946 -13.56659 -13.41998 -13.11765 -12.92620 -12.79972 -12.46386 -12.34875 -11.95792 -11.90487 -11.86046 -11.50725 -11.38853 -11.24214 -11.01677 -10.87793 -10.33677 -9.43508 -9.41896 -9.31299 -9.10992 -8.94390 -8.75032 -8.57996 -7.89629 -6.18094 -4.25344 0.51405 0.66335 2.00842 2.98737 3.23710 3.28658 3.30049 3.34718 3.46835 3.64227 4.02699 4.18158 4.21842 4.33872 4.40992 4.65484 4.68697 4.80053 4.84246 5.17617 5.18385 5.32841 5.33324 5.42926 5.47420 5.50367 5.55679 5.58305 5.62505 5.67283 5.79490 5.93483 6.02590 6.36096 6.43670 6.52866 6.83862 7.20590 7.30057 7.41608 7.50305 7.64761 7.95592 8.60494 8.76347 9.08325 9.41359 10.92020 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002342 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.696339 B =11953.223900 C =12614.266030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 C -0.115 4.115 4 C 0.162 3.838 5 H 0.065 0.935 6 N -0.661 5.661 7 C 0.041 3.959 8 C 0.497 3.503 9 O -0.543 6.543 10 N -0.714 5.714 11 C 0.251 3.749 12 C -0.545 4.545 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.066 4.066 21 C -0.091 4.091 22 C -0.127 4.127 23 C 0.065 3.935 24 F -0.130 7.130 25 C 0.069 3.931 26 F -0.127 7.127 27 C -0.103 4.103 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.356 0.644 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.267 0.733 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 1.693 23.714 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.098 4.098 3 C -0.171 4.171 4 C 0.052 3.948 5 H 0.083 0.917 6 N -0.295 5.295 7 C -0.091 4.091 8 C 0.281 3.719 9 O -0.421 6.421 10 N -0.363 5.363 11 C 0.131 3.869 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.067 4.067 21 C -0.110 4.110 22 C -0.146 4.146 23 C 0.045 3.955 24 F -0.109 7.109 25 C 0.049 3.951 26 F -0.105 7.105 27 C -0.122 4.122 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.189 2.627 23.577 25.441 hybrid contribution -0.616 -1.306 -0.580 1.556 sum -9.805 1.321 22.997 25.035 Atomic orbital electron populations 1.23666 0.95020 1.02001 1.02915 1.21561 0.94552 0.95157 0.98544 1.20771 1.01259 0.93781 1.01302 1.19514 0.92773 0.95538 0.86936 0.91683 1.60137 1.08688 1.59560 1.01079 1.21886 0.97229 0.99890 0.90130 1.20285 0.88923 0.78588 0.84120 1.90673 1.19586 1.48204 1.83627 1.46443 1.14994 1.65238 1.09609 1.19083 0.88043 0.97680 0.82117 1.21184 0.96905 1.46505 0.93694 0.91976 1.24954 0.94847 0.95048 0.99156 1.69964 1.07725 1.46806 1.27750 0.86476 0.79177 0.79264 0.81997 1.20052 1.21058 1.20083 1.19723 0.94305 0.96631 0.96056 1.20955 1.00108 0.98054 0.91867 1.21018 0.93216 1.00728 0.99593 1.17754 0.93401 1.01537 0.82847 1.91529 1.78642 1.94618 1.46109 1.17718 0.84617 0.97614 0.95188 1.91552 1.43656 1.79397 1.95921 1.21174 0.94622 1.00303 0.96105 0.88588 0.88073 0.90970 0.91433 0.92302 0.82313 0.88346 0.92598 0.77793 0.95526 0.95615 0.92363 0.84243 0.83623 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 13.95 29.01 0.40 -1.16 16 2 C -0.10 -0.89 4.81 -101.07 -0.49 -1.38 16 3 C -0.11 -1.10 9.55 36.01 0.34 -0.76 16 4 C 0.16 1.47 2.38 -70.02 -0.17 1.30 16 5 H 0.07 0.50 7.31 -51.93 -0.38 0.12 16 6 N -0.66 -7.91 5.03 -110.46 -0.56 -8.47 16 7 C 0.04 0.52 5.96 -4.98 -0.03 0.50 16 8 C 0.50 9.35 7.87 -10.98 -0.09 9.27 16 9 O -0.54 -12.54 16.20 5.56 0.09 -12.45 16 10 N -0.71 -14.43 5.55 -61.47 -0.34 -14.77 16 11 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 12 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 13 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 16 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.07 -0.58 4.66 -104.62 -0.49 -1.07 16 21 C -0.09 -0.64 9.66 -39.58 -0.38 -1.02 16 22 C -0.13 -0.94 10.02 -39.53 -0.40 -1.34 16 23 C 0.06 0.65 7.31 -39.37 -0.29 0.36 16 24 F -0.13 -1.44 17.18 2.25 0.04 -1.40 16 25 C 0.07 0.75 7.31 -39.36 -0.29 0.46 16 26 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 27 C -0.10 -1.04 8.04 -39.53 -0.32 -1.36 16 28 H 0.10 0.64 7.84 -52.49 -0.41 0.23 16 29 H 0.10 0.74 8.05 -52.48 -0.42 0.32 16 30 H 0.07 0.76 5.77 -51.93 -0.30 0.46 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.36 4.55 7.68 -39.29 -0.30 4.25 16 34 H 0.10 1.15 8.00 -51.93 -0.42 0.73 16 35 H 0.06 0.59 8.06 -51.93 -0.42 0.18 16 36 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.14 0.65 8.03 -52.49 -0.42 0.22 16 41 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.16 1.71 6.39 -52.49 -0.34 1.38 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -31.99 368.96 -7.47 -39.46 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.39 Total: 6.11 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.62 Total: -2.90 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.16 Total: -48.45 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.99 -7.47 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775725505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.077 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds