Wall clock time and date at job start Tue Mar 31 2020 14:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99687 * 2 1 4 4 C 1.50692 * 120.00161 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.47238 * 4.99821 * 4 2 1 6 6 N 1.46901 * 109.47391 * 124.99998 * 4 2 1 7 7 C 1.46895 * 110.99816 * 275.00035 * 6 4 2 8 8 C 1.50706 * 109.47182 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99503 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72734 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 C 1.50690 * 109.47072 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00210 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99820 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00036 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00010 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47177 * 59.99528 * 16 14 12 18 18 H 1.48496 * 109.46992 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46935 * 299.99881 * 16 14 12 20 20 C 1.50705 * 109.47358 * 245.00028 * 4 2 1 21 21 C 1.38264 * 119.96445 * 99.99548 * 20 4 2 22 22 C 1.38205 * 120.06734 * 180.02562 * 21 20 4 23 23 C 1.38409 * 120.00369 * 0.02562 * 22 21 20 24 24 F 1.35099 * 120.03601 * 180.02562 * 23 22 21 25 25 C 1.38648 * 119.93131 * 359.97438 * 23 22 21 26 26 F 1.35103 * 120.04006 * 180.02562 * 25 23 22 27 27 C 1.38206 * 119.96279 * 279.73105 * 20 4 2 28 28 H 1.07998 * 119.99613 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99961 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46913 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47602 * 300.00023 * 3 2 1 32 32 H 1.08997 * 109.47266 * 60.00123 * 3 2 1 33 33 H 1.00899 * 111.00258 * 151.04265 * 6 4 2 34 34 H 1.09001 * 109.47613 * 60.00104 * 7 6 4 35 35 H 1.08998 * 109.47678 * 300.00000 * 7 6 4 36 36 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 38 38 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 39 39 H 0.97005 * 119.99861 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.96396 * 359.97438 * 21 20 4 41 41 H 1.08003 * 119.99693 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.00492 * 359.96985 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 1 1.3586 -2.1316 -0.0905 6 7 2.9964 -1.3314 -1.1351 7 6 2.3249 -1.7911 -2.3581 8 6 3.3108 -1.8043 -3.4978 9 8 4.4599 -1.4648 -3.3095 10 7 2.9172 -2.1993 -4.7248 11 6 3.8758 -2.2127 -5.8326 12 6 3.1888 -2.6911 -7.0856 13 1 2.1428 -2.9588 -7.0593 14 6 3.8956 -2.7870 -8.2655 15 7 5.1691 -2.4606 -8.2976 16 14 3.0437 -3.3794 -9.8190 17 1 1.9204 -2.4652 -10.1469 18 1 4.0151 -3.3919 -10.9421 19 1 2.5184 -4.7514 -9.6029 20 6 2.8348 -1.4404 1.2871 21 6 2.3349 -2.2217 2.3125 22 6 3.0402 -2.3469 3.4945 23 6 4.2479 -1.6895 3.6529 24 9 4.9380 -1.8119 4.8078 25 6 4.7491 -0.9061 2.6246 26 9 5.9280 -0.2639 2.7766 27 6 4.0435 -0.7880 1.4396 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 3.1352 1.1060 0.0005 31 1 1.8002 1.8768 -0.8900 32 1 1.8002 1.8767 0.8900 33 1 3.8016 -1.9031 -0.9280 34 1 1.5031 -1.1161 -2.5970 35 1 1.9353 -2.7971 -2.2026 36 1 1.9994 -2.4753 -4.8743 37 1 4.2618 -1.2057 -5.9913 38 1 4.7002 -2.8839 -5.5917 39 1 5.6664 -2.5284 -9.1277 40 1 1.3921 -2.7338 2.1900 41 1 2.6485 -2.9571 4.2949 42 1 4.4353 -0.1818 0.6361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775725505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:32 Heat of formation + Delta-G solvation = -106.007294 kcal Electronic energy + Delta-G solvation = -26401.708059 eV Core-core repulsion = 22210.077467 eV Total energy + Delta-G solvation = -4191.630592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.53504 -49.62159 -40.90671 -40.22121 -37.79216 -36.10829 -34.63033 -34.30376 -32.16212 -31.78323 -29.80939 -28.22259 -27.76708 -25.58157 -24.38815 -23.79880 -22.86512 -21.35900 -19.54869 -19.20458 -18.74232 -18.19066 -18.08156 -17.46543 -17.38317 -17.08495 -16.84101 -16.22938 -16.05623 -15.82587 -15.80783 -15.51545 -15.33641 -15.08406 -14.67716 -14.41475 -14.20578 -14.05806 -13.91272 -13.76077 -13.57204 -13.19058 -13.09382 -12.91217 -12.67079 -12.59522 -12.48947 -12.23079 -12.08466 -11.93405 -11.49970 -10.78008 -10.71329 -10.09241 -9.96269 -9.80035 -9.66314 -9.43266 -8.28008 -6.44712 -0.18839 -0.00276 1.37553 1.43872 1.47879 1.56068 1.83543 2.27835 2.34673 2.52708 2.76431 3.06903 3.22494 3.28873 3.50840 3.66870 3.96996 3.99649 4.07065 4.11099 4.19771 4.39683 4.52524 4.61665 4.71572 4.78271 4.83821 4.89837 4.92894 5.00948 5.12728 5.17004 5.24720 5.26259 5.29996 5.50570 5.67482 5.70646 5.78125 5.81671 5.86865 6.12591 6.28167 6.67008 6.97720 7.25179 7.56192 8.83954 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002342 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.696339 B =11953.223900 C =12614.266030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.121 4.121 3 C -0.114 4.114 4 C 0.169 3.831 5 H 0.095 0.905 6 N -0.680 5.680 7 C 0.060 3.940 8 C 0.492 3.508 9 O -0.593 6.593 10 N -0.709 5.709 11 C 0.268 3.732 12 C -0.555 4.555 13 H 0.085 0.915 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.067 4.067 21 C -0.075 4.075 22 C -0.115 4.115 23 C 0.050 3.950 24 F -0.141 7.141 25 C 0.041 3.959 26 F -0.146 7.146 27 C -0.111 4.111 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.348 0.652 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.409 0.591 37 H -0.016 1.016 38 H -0.014 1.014 39 H 0.268 0.732 40 H 0.178 0.822 41 H 0.177 0.823 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -0.125 24.232 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.121 4.121 3 C -0.171 4.171 4 C 0.060 3.940 5 H 0.113 0.887 6 N -0.313 5.313 7 C -0.071 4.071 8 C 0.279 3.721 9 O -0.474 6.474 10 N -0.360 5.360 11 C 0.145 3.855 12 C -0.593 4.593 13 H 0.103 0.897 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.807 3.193 17 H -0.186 1.186 18 H -0.213 1.213 19 H -0.185 1.185 20 C -0.068 4.068 21 C -0.093 4.093 22 C -0.133 4.133 23 C 0.029 3.971 24 F -0.120 7.120 25 C 0.021 3.979 26 F -0.125 7.125 27 C -0.130 4.130 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.245 0.755 37 H 0.002 0.998 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.196 0.804 41 H 0.194 0.806 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.633 0.809 24.133 27.730 hybrid contribution 0.739 -0.688 -0.668 1.211 sum -12.894 0.121 23.465 26.775 Atomic orbital electron populations 1.23881 0.94377 1.03263 1.00140 1.21523 0.95078 0.94563 1.00967 1.20730 1.00409 0.94779 1.01190 1.19568 0.92436 0.96462 0.85526 0.88723 1.60088 1.09379 1.59860 1.01962 1.21770 0.95191 1.02529 0.87648 1.21460 0.89397 0.76417 0.84819 1.90655 1.22376 1.49936 1.84398 1.46164 1.14934 1.65885 1.08994 1.18481 0.88403 0.94134 0.84479 1.21605 0.97956 1.45984 0.93755 0.89651 1.26084 0.95419 0.94940 1.03289 1.70139 1.09820 1.48305 1.28844 0.85216 0.77967 0.79360 0.76731 1.18611 1.21314 1.18514 1.19830 0.93579 0.96621 0.96753 1.21345 1.00907 0.96559 0.90534 1.21385 0.91682 0.99684 1.00571 1.18049 0.94473 1.02230 0.82301 1.91497 1.79141 1.94755 1.46597 1.18005 0.84606 0.98952 0.96314 1.91490 1.44876 1.80030 1.96102 1.21079 0.95616 1.00880 0.95402 0.86375 0.87746 0.92751 0.92406 0.91629 0.83146 0.86298 0.88956 0.75541 0.99845 0.99646 0.92315 0.80418 0.80594 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 13.95 67.78 0.95 -1.14 16 2 C -0.12 -1.88 4.81 -16.50 -0.08 -1.96 16 3 C -0.11 -2.17 9.55 71.24 0.68 -1.48 16 4 C 0.17 2.53 2.38 43.42 0.10 2.64 16 5 H 0.10 0.91 7.31 -2.39 -0.02 0.90 16 6 N -0.68 -15.35 5.03 -503.38 -2.53 -17.88 16 7 C 0.06 1.38 5.96 85.56 0.51 1.89 16 8 C 0.49 18.50 7.87 87.66 0.69 19.19 16 9 O -0.59 -28.61 16.20 -3.04 -0.05 -28.66 16 10 N -0.71 -28.59 5.55 -466.79 -2.59 -31.18 16 11 C 0.27 14.56 5.43 85.63 0.46 15.02 16 12 C -0.56 -29.75 9.28 25.60 0.24 -29.52 16 13 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 14 C 0.00 0.12 5.46 84.66 0.46 0.58 16 15 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 16 Si 0.98 41.80 29.54 68.60 2.03 43.82 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 18 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 C -0.07 -1.03 4.66 -19.86 -0.09 -1.12 16 21 C -0.08 -0.76 9.66 22.27 0.22 -0.54 16 22 C -0.11 -1.37 10.02 22.30 0.22 -1.15 16 23 C 0.05 0.96 7.31 22.41 0.16 1.13 16 24 F -0.14 -3.12 17.18 44.97 0.77 -2.35 16 25 C 0.04 0.94 7.31 22.41 0.16 1.11 16 26 F -0.15 -4.00 17.18 44.97 0.77 -3.23 16 27 C -0.11 -2.30 8.04 22.31 0.18 -2.12 16 28 H 0.12 0.88 7.84 -2.91 -0.02 0.86 16 29 H 0.10 1.16 8.05 -2.91 -0.02 1.14 16 30 H 0.05 1.21 5.77 -2.38 -0.01 1.20 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.35 8.82 7.68 -89.69 -0.69 8.13 16 34 H 0.12 2.32 8.00 -2.39 -0.02 2.30 16 35 H 0.09 1.52 8.06 -2.39 -0.02 1.50 16 36 H 0.41 13.19 8.32 -92.71 -0.77 12.42 16 37 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.90 16 39 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 40 H 0.18 0.49 8.03 -2.91 -0.02 0.47 16 41 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.14 3.38 6.39 -2.91 -0.02 3.36 16 Total: -1.00 -75.14 368.96 3.16 -71.98 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.39 Total: 21.00 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 4.87 Total: 2.54 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.84 Total: -105.10 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 1.55 Total: -5.58 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -75.14 3.16 -71.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775725505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.025 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds