Wall clock time and date at job start Tue Mar 31 2020 14:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47460 * 2 1 4 4 H 1.09000 * 109.46659 * 305.00093 * 3 2 1 5 5 C 1.50692 * 109.47636 * 184.99763 * 3 2 1 6 6 H 1.07996 * 120.00043 * 240.00318 * 5 3 2 7 7 C 1.37879 * 119.99945 * 59.99880 * 5 3 2 8 8 N 1.31514 * 119.99948 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00186 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47494 * 59.99475 * 9 7 5 11 11 H 1.48499 * 109.47593 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46955 * 299.99900 * 9 7 5 13 13 O 1.45199 * 109.46814 * 64.99374 * 3 2 1 14 14 C 1.34791 * 117.00234 * 270.00225 * 13 3 2 15 15 O 1.21536 * 119.99951 * 0.02562 * 14 13 3 16 16 C 1.47166 * 119.99802 * 180.02562 * 14 13 3 17 17 C 1.39953 * 120.12782 * 359.97438 * 16 14 13 18 18 C 1.37555 * 120.02966 * 180.02562 * 17 16 14 19 19 C 1.39101 * 120.29125 * 0.02562 * 18 17 16 20 20 O 1.35807 * 119.87379 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00079 * 0.02562 * 20 19 18 22 22 C 1.39004 * 120.25313 * 359.74649 * 19 18 17 23 23 O 1.36100 * 120.02169 * 180.25342 * 22 19 18 24 24 C 1.42905 * 117.00097 * 273.65339 * 23 22 19 25 25 C 1.38802 * 119.96435 * 0.48473 * 22 19 18 26 26 O 1.35749 * 120.14678 * 179.78749 * 25 22 19 27 27 C 1.42896 * 116.99401 * 83.96583 * 26 25 22 28 28 H 1.09001 * 109.47545 * 300.00264 * 1 2 3 29 29 H 1.09004 * 109.46699 * 60.00050 * 1 2 3 30 30 H 1.08993 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47545 * 239.99736 * 2 1 3 32 32 H 1.09003 * 109.47096 * 119.99586 * 2 1 3 33 33 H 0.97003 * 120.00277 * 179.97438 * 8 7 5 34 34 H 1.07995 * 119.98262 * 0.02759 * 17 16 14 35 35 H 1.07998 * 119.85742 * 180.02562 * 18 17 16 36 36 H 1.08994 * 109.47266 * 59.99718 * 21 20 19 37 37 H 1.09005 * 109.47182 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.46786 * 299.99861 * 21 20 19 39 39 H 1.08997 * 109.47320 * 295.20828 * 24 23 22 40 40 H 1.08994 * 109.46748 * 55.21194 * 24 23 22 41 41 H 1.09000 * 109.47198 * 175.20935 * 24 23 22 42 42 H 1.08998 * 109.46894 * 175.16789 * 27 26 25 43 43 H 1.09007 * 109.47611 * 295.16638 * 27 26 25 44 44 H 1.08998 * 109.47280 * 55.16940 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3810 10 1 6.5968 0.1454 -0.2342 11 1 6.3980 0.2157 -2.6496 12 1 6.5005 2.2799 -1.3807 13 8 1.6558 2.0917 1.2407 14 6 0.4677 2.7281 1.2559 15 8 -0.2283 2.7397 0.2596 16 6 0.0133 3.4089 2.4790 17 6 0.8124 3.3967 3.6279 18 6 0.3855 4.0332 4.7701 19 6 -0.8401 4.6908 4.7905 20 8 -1.2535 5.3160 5.9230 21 6 -0.3796 5.2578 7.0522 22 6 -1.6412 4.7144 3.6548 23 8 -2.8371 5.3636 3.6785 24 6 -3.9669 4.6254 4.1486 25 6 -1.2229 4.0715 2.4979 26 8 -2.0043 4.0886 1.3880 27 6 -1.8991 5.2326 0.5383 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8294 -0.0613 -2.9497 34 1 1.7647 2.8874 3.6176 35 1 1.0046 4.0224 5.6550 36 1 0.5755 5.7163 6.7965 37 1 -0.8286 5.7957 7.8872 38 1 -0.2192 4.2171 7.3341 39 1 -4.1719 3.8009 3.4659 40 1 -3.7548 4.2304 5.1421 41 1 -4.8356 5.2820 4.1965 42 1 -2.5094 5.0812 -0.3521 43 1 -2.2492 6.1158 1.0728 44 1 -0.8586 5.3736 0.2459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787091688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:52 Heat of formation + Delta-G solvation = -185.456950 kcal Electronic energy + Delta-G solvation = -28679.192560 eV Core-core repulsion = 24562.911536 eV Total energy + Delta-G solvation = -4116.281024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11763 -41.02548 -39.90167 -38.71208 -37.57131 -37.27806 -35.44045 -33.36462 -31.58806 -31.25047 -29.34117 -28.50474 -28.18346 -27.34811 -25.56307 -24.63916 -23.38785 -22.42423 -21.37408 -19.83684 -19.18016 -18.72965 -18.32547 -17.74842 -17.54617 -17.24463 -17.02579 -16.85347 -16.40227 -16.35821 -15.97463 -15.68834 -15.52194 -15.01296 -14.76467 -14.25787 -14.17253 -13.86362 -13.78414 -13.38734 -13.29711 -13.24128 -13.09164 -12.80577 -12.77540 -12.67146 -12.53732 -12.21612 -12.13535 -12.01511 -11.74516 -11.52611 -11.43081 -11.28611 -10.80100 -10.72996 -10.50420 -9.89392 -9.44398 -8.25206 -6.42244 -0.48006 -0.16070 1.42732 1.46656 1.51782 1.54847 1.89857 1.98425 2.31808 2.45132 2.63698 2.92995 3.04503 3.69901 3.78604 3.88827 4.08564 4.10444 4.33846 4.36764 4.38025 4.40275 4.41274 4.43025 4.44410 4.48494 4.54640 4.68609 4.76023 4.76868 4.80419 4.88255 4.95092 5.04338 5.10079 5.19683 5.23075 5.38944 5.52765 5.68224 5.94916 5.98650 6.13555 6.19918 6.52369 6.62901 7.03208 7.29454 8.81490 Molecular weight = 324.15amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.003515 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.289504 B = 7964.397715 C = 8845.986476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.228 3.772 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.269 1.269 13 O -0.358 6.358 14 C 0.493 3.507 15 O -0.523 6.523 16 C -0.193 4.193 17 C -0.009 4.009 18 C -0.200 4.200 19 C 0.161 3.839 20 O -0.311 6.311 21 C 0.008 3.992 22 C 0.013 3.987 23 O -0.329 6.329 24 C 0.033 3.967 25 C 0.167 3.833 26 O -0.334 6.334 27 C 0.053 3.947 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.270 0.730 34 H 0.158 0.842 35 H 0.185 0.815 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 9.497 18.912 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.194 1.194 13 O -0.275 6.275 14 C 0.338 3.662 15 O -0.415 6.415 16 C -0.195 4.195 17 C -0.027 4.027 18 C -0.218 4.218 19 C 0.113 3.887 20 O -0.223 6.223 21 C -0.085 4.085 22 C -0.032 4.032 23 O -0.246 6.246 24 C -0.061 4.061 25 C 0.122 3.878 26 O -0.251 6.251 27 C -0.040 4.040 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.176 0.824 35 H 0.202 0.798 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.084 0.916 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.576 9.545 18.349 22.792 hybrid contribution 0.912 -0.361 -0.747 1.233 sum -8.664 9.185 17.602 21.662 Atomic orbital electron populations 1.21683 0.96541 1.00343 0.99898 1.21864 0.94157 0.98225 1.02357 1.20355 0.94534 0.89122 0.78475 0.97713 1.21298 0.90341 1.40022 1.07004 0.91358 1.25804 1.04215 0.93862 0.94332 1.70017 1.37526 1.37886 1.09854 0.85262 0.77683 0.78752 0.77891 1.18715 1.20384 1.19411 1.86496 1.35092 1.63293 1.42601 1.21181 0.80058 0.76719 0.88196 1.90789 1.55453 1.59002 1.36211 1.19539 0.96762 1.08626 0.94537 1.21431 0.98448 0.93150 0.89658 1.21479 0.96472 1.02836 1.01041 1.19512 0.92604 0.90554 0.85995 1.86128 1.47451 1.69361 1.19374 1.23604 0.95061 1.04184 0.85694 1.18080 0.90287 1.03279 0.91565 1.86055 1.14118 1.38353 1.86051 1.23192 0.87080 0.97482 0.98366 1.18872 0.88352 0.92852 0.87742 1.85874 1.61115 1.44468 1.33617 1.22981 1.01345 0.86166 0.93528 0.94950 0.94677 0.92127 0.89466 0.93475 0.92073 0.82430 0.79795 0.90801 0.85661 0.90613 0.94199 0.92768 0.86414 0.87464 0.91640 0.95147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.56 71.98 0.62 -5.31 16 2 C -0.13 -6.63 5.49 30.59 0.17 -6.46 16 3 C 0.23 12.70 2.25 29.85 0.07 12.77 16 4 H 0.01 0.32 7.16 -2.39 -0.02 0.30 16 5 C -0.55 -31.26 8.90 25.60 0.23 -31.03 16 6 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 7 C 0.02 0.97 5.29 84.66 0.45 1.42 16 8 N -0.92 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.98 42.80 29.54 68.60 2.03 44.82 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 O -0.36 -17.70 9.04 -57.03 -0.52 -18.22 16 14 C 0.49 22.60 6.33 70.17 0.44 23.04 16 15 O -0.52 -26.47 11.92 26.74 0.32 -26.15 16 16 C -0.19 -7.03 5.89 -20.02 -0.12 -7.15 16 17 C -0.01 -0.24 9.60 22.52 0.22 -0.02 16 18 C -0.20 -4.13 9.01 22.32 0.20 -3.93 16 19 C 0.16 3.78 6.70 22.66 0.15 3.93 16 20 O -0.31 -5.89 10.26 -77.15 -0.79 -6.68 16 21 C 0.01 0.07 9.81 113.37 1.11 1.18 16 22 C 0.01 0.38 5.74 22.59 0.13 0.51 16 23 O -0.33 -9.01 9.97 -70.37 -0.70 -9.72 16 24 C 0.03 0.67 11.13 113.37 1.26 1.93 16 25 C 0.17 5.80 5.74 22.90 0.13 5.93 16 26 O -0.33 -12.38 8.44 -63.33 -0.53 -12.92 16 27 C 0.05 1.64 10.65 113.37 1.21 2.85 16 28 H 0.03 1.48 6.06 -2.39 -0.01 1.46 16 29 H 0.03 1.73 7.79 -2.39 -0.02 1.71 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 31 H 0.09 4.89 5.95 -2.39 -0.01 4.88 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.16 4.21 7.60 -2.91 -0.02 4.19 16 35 H 0.18 2.19 6.27 -2.91 -0.02 2.17 16 36 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 37 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.08 0.47 7.65 -2.38 -0.02 0.45 16 39 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 Total: -1.00 -73.42 368.38 7.32 -66.10 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.01 Total: 15.66 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 6.27 Total: -0.35 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.24 Total: -52.55 kcal Atomic # 8 Polarization: -71.45 SS G_CDS: -2.22 Total: -73.68 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.42 7.32 -66.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787091688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.358 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds