Wall clock time and date at job start Tue Mar 31 2020 14:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00102 * 2 1 4 4 N 1.46906 * 109.47266 * 235.78567 * 3 2 1 5 5 C 1.46897 * 110.99875 * 164.51389 * 4 3 2 6 6 C 1.50703 * 109.47031 * 293.95128 * 5 4 3 7 7 H 1.07995 * 120.00092 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99609 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99514 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46862 * 89.99808 * 10 8 6 12 12 H 1.48498 * 109.46926 * 209.99661 * 10 8 6 13 13 H 1.48496 * 109.47183 * 329.99896 * 10 8 6 14 14 C 1.46901 * 110.99639 * 288.46236 * 4 3 2 15 15 N 1.46505 * 109.46691 * 164.85095 * 14 4 3 16 16 N 1.40172 * 126.35281 * 95.35741 * 15 14 4 17 17 C 1.29412 * 108.13610 * 179.97438 * 16 15 14 18 18 C 1.50700 * 125.58345 * 179.97438 * 17 16 15 19 19 O 1.42895 * 109.47376 * 89.97733 * 18 17 16 20 20 N 1.37315 * 108.83439 * 0.02562 * 17 16 15 21 21 C 1.46502 * 125.82952 * 179.97438 * 20 17 16 22 22 C 1.53000 * 117.49939 * 197.46565 * 21 20 17 23 23 C 1.52997 * 117.49677 * 128.80653 * 21 20 17 24 24 C 1.34813 * 108.34406 * 359.73490 * 20 17 16 25 25 S 1.71201 * 126.30547 * 180.30277 * 24 20 17 26 26 H 1.08001 * 120.00028 * 359.97438 * 1 2 3 27 27 H 1.07996 * 119.99986 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00028 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47178 * 355.78475 * 3 2 1 30 30 H 1.09006 * 109.47401 * 115.78631 * 3 2 1 31 31 H 1.08998 * 109.47796 * 53.95322 * 5 4 3 32 32 H 1.09002 * 109.47255 * 173.95398 * 5 4 3 33 33 H 0.97003 * 119.99382 * 180.02562 * 9 8 6 34 34 H 1.08994 * 109.47417 * 284.85296 * 14 4 3 35 35 H 1.09005 * 109.46972 * 44.85733 * 14 4 3 36 36 H 1.09000 * 109.47560 * 209.98056 * 18 17 16 37 37 H 1.09006 * 109.47023 * 329.97813 * 18 17 16 38 38 H 0.96698 * 114.00180 * 180.02562 * 19 18 17 39 39 H 1.08997 * 115.54764 * 343.13820 * 21 20 17 40 40 H 1.09001 * 117.50165 * 359.97438 * 22 21 20 41 41 H 1.08999 * 117.49718 * 145.02178 * 22 21 20 42 42 H 1.09010 * 117.49564 * 214.98494 * 23 21 20 43 43 H 1.09000 * 117.50078 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9828 1.3398 -1.1453 5 6 3.4585 2.7066 -1.3973 6 6 2.3029 3.5672 -1.8390 7 1 1.3140 3.1415 -1.9236 8 6 2.5083 4.8981 -2.1350 9 7 3.7124 5.4166 -2.0315 10 14 1.0757 5.9650 -2.6818 11 1 0.4376 6.5844 -1.4924 12 1 1.5706 7.0310 -3.5894 13 1 0.0800 5.1279 -3.3980 14 6 4.1096 0.4190 -0.9440 15 7 4.7976 0.2030 -2.2193 16 7 5.9306 0.8887 -2.6786 17 6 6.2420 0.4175 -3.8430 18 6 7.3985 0.8757 -4.6937 19 8 8.5577 0.1020 -4.3782 20 7 5.3454 -0.5674 -4.1769 21 6 5.3516 -1.3485 -5.4164 22 6 4.0683 -2.0941 -5.7880 23 6 5.2895 -2.8721 -5.2915 24 6 4.4615 -0.6966 -3.1672 25 16 3.1520 -1.7975 -3.1010 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3576 2.1322 -0.0755 30 1 2.6324 1.3963 0.9254 31 1 3.8880 3.1162 -0.4831 32 1 4.2178 2.6887 -2.1792 33 1 3.8567 6.3530 -2.2395 34 1 4.8057 0.8487 -0.2237 35 1 3.7375 -0.5333 -0.5661 36 1 7.1495 0.7442 -5.7467 37 1 7.5997 1.9287 -4.4966 38 1 9.3426 0.3433 -4.8890 39 1 5.9466 -0.9340 -6.2302 40 1 3.2195 -2.0038 -5.1102 41 1 3.8192 -2.1705 -6.8464 42 1 5.8434 -3.4600 -6.0234 43 1 5.2444 -3.2933 -4.2872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793559979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:31 Heat of formation + Delta-G solvation = 121.101379 kcal Electronic energy + Delta-G solvation = -25985.298457 eV Core-core repulsion = 22389.649173 eV Total energy + Delta-G solvation = -3595.649284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.62126 -37.97975 -37.33219 -36.95725 -33.81434 -33.08907 -32.19467 -31.85528 -28.53518 -27.11723 -26.26245 -24.46650 -23.38388 -22.59661 -22.06062 -20.99083 -20.78113 -19.21995 -18.12756 -17.94122 -16.77933 -16.57636 -16.17968 -15.75713 -15.34797 -14.97553 -14.74750 -14.67938 -14.51273 -14.12295 -13.85583 -13.24281 -12.74225 -12.46466 -12.33591 -12.07283 -11.96219 -11.83847 -11.57120 -11.55213 -11.22009 -11.06157 -10.84440 -10.79240 -10.63800 -10.55733 -10.45367 -10.25780 -10.03126 -9.68270 -9.30790 -8.85001 -8.51893 -7.57116 -7.24108 -6.92823 -6.09812 -4.11432 1.30103 1.55189 1.59677 2.43076 2.55764 2.85476 3.27229 3.33508 3.39504 3.68711 3.82208 4.19185 4.35844 4.38345 4.47470 4.55215 4.81307 4.89784 4.94271 4.98965 5.25753 5.35078 5.42339 5.44588 5.48587 5.62740 5.71295 5.79850 5.97859 6.07246 6.26135 6.35813 6.45623 6.53867 6.65935 7.08515 7.10360 7.14024 7.18217 7.34708 7.36125 7.66545 7.91443 8.01630 8.36427 8.95833 9.52713 11.00644 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.004959 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.527750 B = 5644.396650 C = 6993.468336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C 0.095 3.905 4 N -0.536 5.536 5 C 0.190 3.810 6 C -0.508 4.508 7 H 0.065 0.935 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.305 3.695 15 N -0.349 5.349 16 N -0.238 5.238 17 C 0.260 3.740 18 C 0.162 3.838 19 O -0.561 6.561 20 N -0.460 5.460 21 C 0.049 3.951 22 C -0.187 4.187 23 C -0.165 4.165 24 C 0.476 3.524 25 S -0.579 6.579 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.034 0.966 31 H -0.005 1.005 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.393 0.607 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 -11.793 -5.900 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.152 4.152 3 C -0.032 4.032 4 N -0.262 5.262 5 C 0.066 3.934 6 C -0.547 4.547 7 H 0.083 0.917 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.197 1.197 14 C 0.095 3.905 15 N -0.141 5.141 16 N -0.060 5.060 17 C -0.020 4.020 18 C 0.082 3.918 19 O -0.367 6.367 20 N -0.160 5.160 21 C -0.054 4.054 22 C -0.227 4.227 23 C -0.204 4.204 24 C 0.115 3.885 25 S -0.448 6.448 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.052 0.948 31 H 0.013 0.987 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.243 0.757 39 H 0.161 0.839 40 H 0.184 0.816 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.629 -11.933 -5.000 15.020 hybrid contribution 0.758 1.513 -0.788 1.867 sum 8.387 -10.420 -5.788 14.574 Atomic orbital electron populations 1.23648 0.95911 1.01121 1.02416 1.22926 0.96105 0.98081 0.98055 1.21118 0.95349 0.96587 0.90135 1.61890 1.14051 1.10940 1.39305 1.19870 0.96531 0.81042 0.95985 1.21112 0.94968 0.93576 1.44998 0.91673 1.24968 0.95864 0.97937 0.95637 1.69970 1.20701 1.13665 1.49231 0.86509 0.82444 0.79985 0.78631 1.20572 1.21264 1.19688 1.22251 0.90884 1.00483 0.76846 1.49633 1.21104 1.25950 1.17439 1.77309 1.01881 1.17446 1.09351 1.24148 0.94376 0.90008 0.93481 1.20285 0.81049 0.95752 0.94737 1.86512 1.20540 1.62020 1.67622 1.45320 1.23019 1.30766 1.16852 1.21984 1.07655 0.91255 0.84494 1.24746 0.95517 0.98443 1.04000 1.23328 1.02055 0.90712 1.04287 1.23668 0.91166 0.91186 0.82471 1.92832 1.24325 1.39528 1.88158 0.88831 0.89125 0.87731 0.88205 0.94790 0.98734 0.94645 0.92934 0.91153 0.86739 0.90228 0.88621 0.75731 0.83923 0.81624 0.88341 0.87868 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 14.32 29.01 0.42 -2.66 16 2 C -0.13 -2.27 9.27 -36.03 -0.33 -2.60 16 3 C 0.10 1.82 5.26 -4.97 -0.03 1.80 16 4 N -0.54 -11.61 4.57 -241.42 -1.10 -12.71 16 5 C 0.19 4.90 4.62 -4.98 -0.02 4.88 16 6 C -0.51 -14.20 8.29 -34.44 -0.29 -14.49 16 7 H 0.07 1.84 7.25 -52.49 -0.38 1.46 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 10 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.31 5.77 5.74 -63.31 -0.36 5.41 16 15 N -0.35 -6.77 3.41 -64.99 -0.22 -6.99 16 16 N -0.24 -4.44 11.76 32.97 0.39 -4.05 16 17 C 0.26 3.98 7.61 -154.19 -1.17 2.80 16 18 C 0.16 1.58 7.34 36.01 0.26 1.84 16 19 O -0.56 -5.01 13.64 -35.23 -0.48 -5.49 16 20 N -0.46 -7.19 3.09 -107.51 -0.33 -7.52 16 21 C 0.05 0.58 6.63 -67.93 -0.45 0.13 16 22 C -0.19 -2.33 9.66 -26.69 -0.26 -2.59 16 23 C -0.17 -1.84 9.91 -26.70 -0.26 -2.10 16 24 C 0.48 8.92 7.69 -86.73 -0.67 8.25 16 25 S -0.58 -11.31 25.42 -107.50 -2.73 -14.05 16 26 H 0.09 1.48 7.84 -52.49 -0.41 1.07 16 27 H 0.09 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.10 1.73 7.04 -52.49 -0.37 1.36 16 29 H 0.10 2.10 6.24 -51.93 -0.32 1.77 16 30 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 31 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 32 H 0.04 0.99 6.93 -51.93 -0.36 0.63 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 35 H 0.11 1.99 6.28 -51.93 -0.33 1.66 16 36 H 0.08 0.52 7.16 -51.93 -0.37 0.15 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.39 1.23 9.12 45.56 0.42 1.64 16 39 H 0.14 1.19 7.17 -51.93 -0.37 0.82 16 40 H 0.17 2.69 4.27 -25.51 -0.11 2.58 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.11 1.45 7.63 -51.93 -0.40 1.05 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -35.37 369.79 -11.55 -46.92 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.09 Total: 5.01 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -3.26 Total: 2.19 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.53 Total: -56.79 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.48 Total: -5.49 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -11.31 SS G_CDS: -2.73 Total: -14.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.37 -11.55 -46.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793559979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.019 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds