Wall clock time and date at job start Tue Mar 31 2020 14:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 C 1.52992 * 109.47167 * 120.00163 * 2 1 3 5 5 N 1.46499 * 109.47208 * 174.10081 * 4 2 1 6 6 C 1.46496 * 120.00482 * 276.69071 * 5 4 2 7 7 C 1.50692 * 109.47319 * 270.00089 * 6 5 4 8 8 H 1.08003 * 120.00081 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00026 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00157 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47060 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47131 * 119.99938 * 11 9 7 14 14 H 1.48501 * 109.46850 * 240.00338 * 11 9 7 15 15 C 1.34778 * 119.99510 * 96.69054 * 5 4 2 16 16 O 1.21282 * 119.99890 * 185.39964 * 15 5 4 17 17 C 1.50700 * 120.00491 * 5.41026 * 15 5 4 18 18 C 1.52994 * 109.47260 * 174.67024 * 17 15 5 19 19 C 1.50703 * 109.47171 * 179.97438 * 18 17 15 20 20 C 1.38614 * 120.41988 * 99.97191 * 19 18 17 21 21 C 1.38667 * 118.43256 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.19684 * 0.02562 * 21 20 19 23 23 N 1.31882 * 120.77680 * 359.97438 * 22 21 20 24 24 C 1.31982 * 121.70350 * 359.97438 * 23 22 21 25 25 Cl 1.73606 * 119.62711 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47372 * 299.99802 * 1 2 3 27 27 H 1.09002 * 109.47211 * 60.00247 * 1 2 3 28 28 H 1.08997 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46753 * 240.00356 * 2 1 3 30 30 H 1.09001 * 109.46917 * 304.71132 * 3 2 1 31 31 H 1.08994 * 109.46935 * 64.70587 * 3 2 1 32 32 H 1.09001 * 109.47089 * 184.71065 * 3 2 1 33 33 H 1.09004 * 109.47061 * 54.10123 * 4 2 1 34 34 H 1.09002 * 109.47505 * 294.10459 * 4 2 1 35 35 H 1.09000 * 109.46579 * 30.00198 * 6 5 4 36 36 H 1.09001 * 109.47117 * 149.99474 * 6 5 4 37 37 H 0.97002 * 119.99926 * 180.02562 * 10 9 7 38 38 H 1.08995 * 109.47046 * 54.66510 * 17 15 5 39 39 H 1.09002 * 109.46570 * 294.66804 * 17 15 5 40 40 H 1.08995 * 109.47510 * 59.99770 * 18 17 15 41 41 H 1.09002 * 109.47150 * 299.99425 * 18 17 15 42 42 H 1.07994 * 120.78856 * 0.05411 * 20 19 18 43 43 H 1.08005 * 120.40778 * 180.02562 * 21 20 19 44 44 H 1.07996 * 119.60999 * 180.26007 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4981 -0.8454 1.1803 6 6 4.1049 -1.9450 0.4261 7 6 4.2993 -3.1308 1.3355 8 1 4.0010 -3.0712 2.3718 9 6 4.8578 -4.2918 0.8446 10 7 5.2215 -4.3643 -0.4173 11 14 5.0981 -5.7620 1.9717 12 1 4.6114 -5.4262 3.3339 13 1 4.3336 -6.9205 1.4439 14 1 6.5410 -6.1077 2.0334 15 6 4.2813 0.0521 1.8109 16 8 5.4856 0.0079 1.6742 17 6 3.6607 1.1104 2.6860 18 6 4.7649 1.9085 3.3821 19 6 4.1444 2.9673 4.2568 20 6 4.0229 2.7665 5.6229 21 6 3.4450 3.7678 6.3886 22 6 3.0116 4.9247 5.7694 23 7 3.1427 5.0827 4.4666 24 6 3.6886 4.1520 3.7066 25 17 3.8338 4.4163 1.9969 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6094 1.9801 -0.8448 31 1 1.7472 1.9314 0.9291 32 1 3.1268 1.4437 -0.0844 33 1 1.5930 -1.7139 1.3035 34 1 1.7654 -0.1502 2.1361 35 1 3.4503 -2.2238 -0.3997 36 1 5.0703 -1.6265 0.0328 37 1 5.6141 -5.1812 -0.7627 38 1 3.0273 0.6364 3.4357 39 1 3.0586 1.7813 2.0732 40 1 5.3984 2.3826 2.6324 41 1 5.3670 1.2376 3.9949 42 1 4.3705 1.8520 6.0803 43 1 3.3349 3.6451 7.4560 44 1 2.5644 5.7106 6.3599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824228313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:25 Heat of formation + Delta-G solvation = -27.143785 kcal Electronic energy + Delta-G solvation = -25590.786553 eV Core-core repulsion = 21954.372419 eV Total energy + Delta-G solvation = -3636.414134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57366 -39.26679 -36.75869 -36.33614 -34.71306 -33.60230 -32.29712 -32.17151 -30.17334 -27.60962 -27.03549 -25.76182 -24.86473 -23.85554 -22.78569 -21.43893 -20.19065 -18.16370 -17.62290 -17.05583 -16.67050 -16.44078 -15.42820 -15.30230 -15.14123 -14.71524 -14.43711 -14.13349 -13.99784 -13.66277 -13.44104 -13.23548 -12.78298 -12.44484 -12.32778 -12.17909 -11.95826 -11.90974 -11.72619 -11.63939 -11.30661 -11.22724 -11.04006 -10.89681 -10.70591 -10.68221 -10.53185 -10.36634 -10.13080 -10.02952 -9.83191 -9.58840 -9.11592 -8.81516 -8.43819 -7.60597 -6.04392 -4.09194 0.65965 0.90007 1.69893 3.28556 3.35116 3.36351 3.38885 3.45786 3.92771 4.21773 4.43867 4.48042 4.59696 4.67010 4.92186 5.03848 5.08129 5.15425 5.22157 5.23577 5.29708 5.34703 5.53024 5.60784 5.65813 5.74107 5.75815 5.81129 5.90219 5.99082 6.09170 6.14763 6.19156 6.21562 6.28692 6.30114 6.49235 6.58758 7.09779 7.45069 7.47957 7.57538 7.92617 8.24422 8.45802 8.90652 9.11769 9.56069 11.03543 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003661 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.224467 B = 7647.350965 C = 8644.316366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.115 3.885 5 N -0.595 5.595 6 C 0.246 3.754 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.510 3.490 16 O -0.544 6.544 17 C -0.146 4.146 18 C -0.067 4.067 19 C -0.107 4.107 20 C -0.062 4.062 21 C -0.168 4.168 22 C 0.106 3.894 23 N -0.478 5.478 24 C 0.172 3.828 25 Cl -0.024 7.024 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 16.600 10.126 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.205 4.205 4 C -0.009 4.009 5 N -0.326 5.326 6 C 0.127 3.873 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.297 3.703 16 O -0.422 6.422 17 C -0.186 4.186 18 C -0.105 4.105 19 C -0.110 4.110 20 C -0.088 4.088 21 C -0.187 4.187 22 C -0.051 4.051 23 N -0.188 5.188 24 C 0.008 3.992 25 Cl 0.004 6.996 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.289 17.224 9.354 21.281 hybrid contribution 0.291 -1.623 0.840 1.850 sum -7.998 15.601 10.194 20.280 Atomic orbital electron populations 1.21758 0.95070 1.01793 1.01370 1.21561 0.95385 0.96515 1.00159 1.21963 1.01505 0.95960 1.01044 1.21540 0.81818 1.00991 0.96564 1.48166 1.05214 1.27994 1.51235 1.19246 0.94502 0.82561 0.91007 1.21478 1.41002 0.97276 0.96715 0.92478 1.24934 0.95289 0.98721 0.95147 1.69946 1.42110 1.27752 1.13463 0.86468 0.77932 0.82365 0.80796 1.19849 1.20984 1.20899 1.20161 0.87202 0.82129 0.80803 1.90662 1.14520 1.73543 1.63486 1.21923 0.99135 0.97836 0.99719 1.20390 0.97263 0.94683 0.98188 1.20755 0.99561 0.95386 0.95273 1.21622 0.95520 0.99407 0.92217 1.22245 0.99873 0.94827 1.01799 1.22649 0.96487 0.96899 0.89070 1.67026 1.14113 1.30935 1.06768 1.21613 0.98225 0.91216 0.88118 1.98424 1.95800 1.96677 1.08664 0.92938 0.92830 0.92457 0.90394 0.92965 0.92843 0.92460 0.90265 0.91576 0.95124 0.93810 0.92799 0.89656 0.88478 0.89028 0.89458 0.83589 0.84025 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 2 C -0.12 -1.64 3.11 -90.62 -0.28 -1.93 16 3 C -0.15 -1.96 7.59 37.16 0.28 -1.68 16 4 C 0.12 1.85 4.89 -4.05 -0.02 1.83 16 5 N -0.60 -12.29 2.26 -175.07 -0.40 -12.68 16 6 C 0.25 6.35 5.22 -5.20 -0.03 6.33 16 7 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 11 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.51 10.28 6.45 -10.98 -0.07 10.21 16 16 O -0.54 -13.26 15.54 5.56 0.09 -13.18 16 17 C -0.15 -2.15 3.99 -27.89 -0.11 -2.26 16 18 C -0.07 -0.92 4.12 -27.88 -0.11 -1.03 16 19 C -0.11 -1.25 5.16 -104.44 -0.54 -1.79 16 20 C -0.06 -0.57 9.82 -39.28 -0.39 -0.96 16 21 C -0.17 -1.28 10.11 -39.44 -0.40 -1.68 16 22 C 0.11 0.93 11.18 -17.55 -0.20 0.73 16 23 N -0.48 -5.70 10.34 -10.36 -0.11 -5.81 16 24 C 0.17 2.15 7.27 -17.45 -0.13 2.02 16 25 Cl -0.02 -0.31 26.81 -51.86 -1.39 -1.70 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.25 8.01 -51.93 -0.42 0.84 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.64 6.49 -51.93 -0.34 0.31 16 32 H 0.06 0.88 6.87 -51.93 -0.36 0.53 16 33 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 34 H 0.07 0.90 6.10 -51.93 -0.32 0.58 16 35 H 0.03 0.81 7.94 -51.93 -0.41 0.39 16 36 H 0.04 1.29 7.35 -51.93 -0.38 0.90 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 1.13 7.36 -51.93 -0.38 0.74 16 39 H 0.10 1.32 3.93 -51.93 -0.20 1.11 16 40 H 0.09 1.36 7.27 -51.93 -0.38 0.99 16 41 H 0.09 1.21 8.03 -51.93 -0.42 0.79 16 42 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.16 372.37 -9.08 -42.23 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.53 Total: -0.54 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.07 Total: -4.87 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.23 Total: -44.19 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.39 Total: -1.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.16 -9.08 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824228313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.088 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds