Wall clock time and date at job start Tue Mar 31 2020 14:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39777 * 119.99972 * 2 1 4 4 C 1.39047 * 119.98604 * 359.97438 * 3 2 1 5 5 C 1.38152 * 120.24429 * 180.02562 * 4 3 2 6 6 C 1.38178 * 120.21675 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 120.01998 * 179.97438 * 6 5 4 8 8 C 1.39696 * 119.96606 * 0.02562 * 6 5 4 9 9 C 1.47785 * 120.12284 * 179.97438 * 8 6 5 10 10 O 1.21560 * 119.99326 * 34.92091 * 9 8 6 11 11 N 1.34773 * 120.00226 * 214.91710 * 9 8 6 12 12 C 1.46506 * 119.99862 * 353.31862 * 11 9 8 13 13 C 1.50697 * 109.47445 * 254.18524 * 12 11 9 14 14 H 1.07998 * 119.99918 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99739 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99776 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46994 * 89.99785 * 17 15 13 19 19 H 1.48501 * 109.47088 * 210.00087 * 17 15 13 20 20 H 1.48496 * 109.47240 * 329.99942 * 17 15 13 21 21 C 1.46496 * 120.00139 * 173.32421 * 11 9 8 22 22 C 1.52996 * 109.47200 * 264.21533 * 21 11 9 23 23 C 1.52998 * 109.47347 * 61.83072 * 22 21 11 24 24 C 1.52997 * 109.47330 * 181.83389 * 22 21 11 25 25 C 1.38575 * 119.98448 * 180.28008 * 3 2 1 26 26 H 1.09000 * 109.47380 * 60.00036 * 1 2 3 27 27 H 1.08996 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47140 * 300.00344 * 1 2 3 29 29 H 0.96997 * 119.99677 * 180.02562 * 2 1 3 30 30 H 1.07997 * 119.87835 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.89490 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.46754 * 14.19157 * 12 11 9 33 33 H 1.09004 * 109.46690 * 134.18458 * 12 11 9 34 34 H 0.97002 * 119.99800 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.47358 * 24.21562 * 21 11 9 36 36 H 1.08998 * 109.47382 * 144.21083 * 21 11 9 37 37 H 1.09004 * 109.47248 * 301.83323 * 22 21 11 38 38 H 1.09000 * 109.46940 * 64.66159 * 23 22 21 39 39 H 1.08993 * 109.47550 * 184.66136 * 23 22 21 40 40 H 1.09002 * 109.47348 * 304.66564 * 23 22 21 41 41 H 1.09002 * 109.47412 * 59.99747 * 24 22 21 42 42 H 1.09001 * 109.47449 * 179.97438 * 24 22 21 43 43 H 1.08997 * 109.46892 * 299.99704 * 24 22 21 44 44 H 1.08000 * 120.11153 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1639 1.2105 0.0000 4 6 1.4683 2.4145 -0.0005 5 6 2.1537 3.6141 -0.0011 6 6 3.5354 3.6255 -0.0005 7 17 4.3914 5.1358 -0.0019 8 6 4.2432 2.4211 0.0000 9 6 5.7210 2.4294 0.0000 10 8 6.3239 3.2962 0.6023 11 7 6.4002 1.4758 -0.6676 12 6 5.6814 0.3502 -1.2699 13 6 5.9116 -0.8911 -0.4469 14 1 6.5310 -0.8459 0.4367 15 6 5.3315 -2.0843 -0.8219 16 7 4.5768 -2.1391 -1.8976 17 14 5.6174 -3.6230 0.1979 18 1 4.5672 -3.7266 1.2426 19 1 5.5599 -4.8178 -0.6821 20 1 6.9524 -3.5478 0.8438 21 6 7.8573 1.5647 -0.7911 22 6 8.2170 2.2179 -2.1270 23 6 7.6522 3.6392 -2.1683 24 6 9.7388 2.2694 -2.2762 25 6 3.5496 1.2101 -0.0059 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.9499 -0.8400 -0.0004 30 1 0.3884 2.4120 -0.0014 31 1 1.6078 4.5459 -0.0019 32 1 4.6151 0.5741 -1.2994 33 1 6.0466 0.1867 -2.2839 34 1 4.1683 -2.9785 -2.1612 35 1 8.2552 2.1663 0.0263 36 1 8.2873 0.5641 -0.7484 37 1 7.7915 1.6341 -2.9432 38 1 8.1388 4.2459 -1.4045 39 1 7.8363 4.0751 -3.1502 40 1 6.5791 3.6094 -1.9794 41 1 10.1413 1.2568 -2.2468 42 1 9.9951 2.7343 -3.2282 43 1 10.1643 2.8533 -1.4601 44 1 4.0912 0.2758 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858826699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:22 Heat of formation + Delta-G solvation = -2.046097 kcal Electronic energy + Delta-G solvation = -26501.112411 eV Core-core repulsion = 22865.786595 eV Total energy + Delta-G solvation = -3635.325816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95905 -38.32800 -36.24555 -35.69222 -34.76609 -34.19351 -32.38447 -30.82730 -29.25173 -27.55999 -26.72175 -26.05731 -25.30500 -23.41410 -22.35526 -21.66050 -19.75191 -18.70105 -16.91459 -16.58714 -16.53824 -16.10582 -15.35224 -15.12927 -14.60816 -14.42791 -14.22983 -14.03416 -13.68916 -13.50216 -13.29930 -12.93313 -12.57198 -12.32738 -12.19640 -12.11295 -11.82436 -11.75036 -11.62987 -11.33686 -11.21345 -11.10784 -10.99820 -10.74687 -10.54162 -10.37506 -10.35090 -10.09176 -10.01325 -9.73900 -9.44686 -8.93479 -8.77585 -8.29901 -7.62433 -6.98240 -6.29336 -4.37910 1.41275 1.79999 2.76321 3.12945 3.21909 3.26084 3.51345 3.78003 3.93586 4.19627 4.33760 5.00009 5.11829 5.24733 5.26868 5.34631 5.39977 5.51268 5.55528 5.61633 5.76545 5.82901 5.86482 5.96238 6.07029 6.12235 6.24668 6.29202 6.35809 6.39539 6.45923 6.51421 6.65148 6.72016 6.74946 6.80525 6.89396 7.02863 7.22565 7.54582 7.65010 7.66864 7.94645 8.02567 8.38339 8.71469 9.04589 9.29892 10.74712 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.007428 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.654998 B = 3768.844299 C = 6660.832241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.746 5.746 3 C 0.206 3.794 4 C -0.177 4.177 5 C -0.086 4.086 6 C -0.049 4.049 7 Cl -0.067 7.067 8 C -0.078 4.078 9 C 0.555 3.445 10 O -0.546 6.546 11 N -0.585 5.585 12 C 0.204 3.796 13 C -0.538 4.538 14 H 0.064 0.936 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.125 3.875 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.147 4.147 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.410 0.590 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 5.883 0.330 7.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.376 5.376 3 C 0.102 3.898 4 C -0.200 4.200 5 C -0.105 4.105 6 C -0.079 4.079 7 Cl -0.038 7.038 8 C -0.082 4.082 9 C 0.343 3.657 10 O -0.426 6.426 11 N -0.315 5.315 12 C 0.085 3.915 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.002 3.998 22 C -0.131 4.131 23 C -0.194 4.194 24 C -0.198 4.198 25 C -0.169 4.169 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.245 0.755 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.733 6.325 0.510 7.916 hybrid contribution 0.190 -1.308 0.302 1.356 sum -4.543 5.017 0.812 6.817 Atomic orbital electron populations 1.21471 0.80828 1.02096 1.00519 1.44483 1.05234 1.05760 1.82142 1.17819 0.91187 0.86370 0.94400 1.20600 0.99385 0.90630 1.09397 1.20541 0.91446 0.98083 1.00474 1.20569 0.91832 0.86345 1.09157 1.98337 1.77748 1.30713 1.97051 1.19584 0.94036 0.91943 1.02662 1.18050 0.86502 0.81663 0.79535 1.90718 1.69676 1.37980 1.44220 1.47990 1.06874 1.23926 1.52680 1.20305 0.94764 0.82553 0.93921 1.21487 1.31488 0.93265 1.11399 0.91820 1.24952 0.94902 0.98757 0.95057 1.69956 1.31531 1.27069 1.23511 0.86571 0.79098 0.82344 0.80003 1.20431 1.21042 1.19694 1.21346 0.80995 1.01003 0.96488 1.21473 0.95488 0.97149 0.99036 1.21739 1.01584 0.95835 1.00231 1.21737 0.95432 1.01496 1.01152 1.22258 0.92523 1.00578 1.01503 0.93268 0.91102 0.93395 0.75467 0.85758 0.85386 0.90981 0.95330 0.92433 0.90664 0.90414 0.91083 0.92789 0.93928 0.92630 0.92706 0.93045 0.92865 0.79133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 9.94 59.85 0.59 1.65 16 2 N -0.75 -11.28 5.89 -65.42 -0.39 -11.67 16 3 C 0.21 3.52 6.65 -83.81 -0.56 2.96 16 4 C -0.18 -2.65 9.30 -39.31 -0.37 -3.01 16 5 C -0.09 -1.33 9.81 -39.63 -0.39 -1.72 16 6 C -0.05 -0.91 6.33 -39.06 -0.25 -1.15 16 7 Cl -0.07 -1.20 26.64 -51.86 -1.38 -2.58 16 8 C -0.08 -1.58 5.51 -104.96 -0.58 -2.16 16 9 C 0.55 12.01 5.48 -12.36 -0.07 11.94 16 10 O -0.55 -12.45 14.00 5.31 0.07 -12.38 16 11 N -0.59 -12.42 2.22 -176.20 -0.39 -12.81 16 12 C 0.20 4.68 4.72 -5.19 -0.02 4.66 16 13 C -0.54 -13.10 7.54 -34.44 -0.26 -13.36 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.88 -22.10 13.29 55.43 0.74 -21.36 16 17 Si 0.89 19.22 29.54 -169.99 -5.02 14.20 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 C 0.13 2.38 4.97 -4.05 -0.02 2.36 16 22 C -0.11 -1.87 3.14 -90.62 -0.28 -2.15 16 23 C -0.14 -2.31 8.52 37.16 0.32 -1.99 16 24 C -0.14 -1.92 9.19 37.16 0.34 -1.58 16 25 C -0.15 -2.91 7.26 -38.97 -0.28 -3.19 16 26 H 0.05 0.51 7.94 -51.93 -0.41 0.10 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.48 7.95 -51.93 -0.41 0.06 16 29 H 0.41 6.62 8.84 -40.82 -0.36 6.26 16 30 H 0.12 1.50 6.71 -52.49 -0.35 1.15 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.07 1.69 3.69 -52.80 -0.20 1.50 16 33 H 0.03 0.71 8.00 -51.93 -0.42 0.29 16 34 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 35 H 0.07 1.45 7.19 -51.93 -0.37 1.08 16 36 H 0.08 1.49 7.87 -51.93 -0.41 1.08 16 37 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 1.06 6.26 -51.93 -0.32 0.74 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.19 4.21 4.04 -52.49 -0.21 4.00 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -26.72 366.23 -9.16 -35.88 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.39 Total: 10.43 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.92 Total: -5.22 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.04 Total: -45.84 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.38 Total: -2.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.72 -9.16 -35.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858826699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.833 kcal (2) G-P(sol) polarization free energy of solvation -26.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds