Wall clock time and date at job start Tue Mar 31 2020 13:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47109 * 2 1 4 4 C 1.50702 * 109.46905 * 119.99627 * 2 1 3 5 5 N 1.31239 * 124.05865 * 300.17084 * 4 2 1 6 6 N 1.27345 * 120.04003 * 180.33790 * 5 4 2 7 7 S 1.56639 * 109.73804 * 359.72042 * 6 5 4 8 8 C 1.38245 * 124.05540 * 120.00412 * 4 2 1 9 9 C 1.47172 * 128.47459 * 359.97438 * 8 4 2 10 10 O 1.21622 * 120.00197 * 359.71037 * 9 8 4 11 11 N 1.34773 * 120.00177 * 179.70207 * 9 8 4 12 12 C 1.46498 * 120.00285 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.50124 * 35.06511 * 12 11 9 14 14 C 1.53037 * 109.52906 * 155.11402 * 12 11 9 15 15 C 1.53038 * 109.54214 * 181.29681 * 14 12 11 16 16 C 1.53191 * 109.34152 * 298.68565 * 15 14 12 17 17 N 1.46925 * 108.77463 * 54.61574 * 16 15 14 18 18 C 1.36934 * 120.62881 * 126.41501 * 17 16 15 19 19 H 1.07999 * 120.00238 * 207.67150 * 18 17 16 20 20 C 1.38813 * 120.00212 * 27.66499 * 18 17 16 21 21 N 1.31618 * 119.99784 * 17.37115 * 20 18 17 22 22 Si 1.86798 * 120.00239 * 197.36648 * 20 18 17 23 23 H 1.48495 * 109.47216 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46727 * 120.00490 * 22 20 18 25 25 H 1.48501 * 109.46989 * 240.00226 * 22 20 18 26 26 C 1.46925 * 118.73947 * 306.39535 * 17 16 15 27 27 H 1.08998 * 109.47074 * 60.00153 * 1 2 3 28 28 H 1.09004 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47262 * 299.99958 * 1 2 3 30 30 H 1.08993 * 109.47563 * 239.99389 * 2 1 3 31 31 H 1.08999 * 109.47136 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47027 * 299.99876 * 3 2 1 33 33 H 1.09004 * 109.47024 * 59.99897 * 3 2 1 34 34 H 0.97008 * 119.99926 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.43391 * 61.29419 * 14 12 11 36 36 H 1.08999 * 109.48608 * 301.33963 * 14 12 11 37 37 H 1.08999 * 109.49614 * 178.70829 * 15 14 12 38 38 H 1.09006 * 109.49634 * 58.65457 * 15 14 12 39 39 H 1.08996 * 109.58281 * 174.40715 * 16 15 14 40 40 H 1.09004 * 109.58459 * 294.68493 * 16 15 14 41 41 H 0.97006 * 120.00403 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.58320 * 173.39910 * 26 17 16 43 43 H 1.09007 * 109.58169 * 293.81941 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7620 -0.3338 2.4584 6 7 2.2330 -0.9881 3.4441 7 16 3.0888 -2.1909 2.9202 8 6 2.8303 -1.8388 1.2015 9 6 3.3445 -2.5668 0.0303 10 8 3.0684 -2.1865 -1.0915 11 7 4.1214 -3.6548 0.2008 12 6 4.6337 -4.3791 -0.9650 13 1 4.8515 -3.6722 -1.7657 14 6 5.9135 -5.1256 -0.5817 15 6 6.4666 -5.8561 -1.8074 16 6 5.4367 -6.8798 -2.2956 17 7 4.1597 -6.1915 -2.5286 18 6 3.5190 -6.2992 -3.7340 19 1 2.8736 -5.5034 -4.0755 20 6 3.6992 -7.4310 -4.5172 21 7 4.1892 -8.5296 -3.9831 22 14 3.2460 -7.3951 -6.3290 23 1 2.7206 -6.0516 -6.6813 24 1 4.4514 -7.6847 -7.1465 25 1 2.2063 -8.4203 -6.5996 26 6 3.5831 -5.3859 -1.4437 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 4.3414 -3.9583 1.0955 35 1 5.6901 -5.8493 0.2022 36 1 6.6545 -4.4138 -0.2180 37 1 7.3904 -6.3688 -1.5392 38 1 6.6676 -5.1357 -2.6004 39 1 5.7832 -7.3319 -3.2249 40 1 5.3044 -7.6539 -1.5397 41 1 4.3147 -9.3208 -4.5302 42 1 2.7064 -4.8526 -1.8109 43 1 3.2977 -6.0370 -0.6172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008946341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:28 Heat of formation + Delta-G solvation = 44.765896 kcal Electronic energy + Delta-G solvation = -25516.183103 eV Core-core repulsion = 21917.223664 eV Total energy + Delta-G solvation = -3598.959439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27815 -39.70548 -37.47097 -35.72566 -34.48880 -32.61709 -31.39685 -30.52636 -29.00088 -27.36218 -27.28840 -25.34552 -23.83179 -22.32798 -22.15674 -21.43569 -20.43151 -19.42690 -18.11122 -17.45529 -16.81244 -16.16295 -15.88019 -15.31869 -14.88353 -14.79556 -14.41383 -14.28276 -13.97686 -13.51371 -13.30442 -13.22425 -13.15008 -12.60537 -12.48012 -12.44216 -12.30978 -11.93133 -11.42463 -11.40141 -11.20539 -11.08695 -10.96787 -10.83580 -10.53201 -10.32748 -10.27237 -10.06515 -10.03951 -9.96681 -9.92780 -9.73297 -9.67745 -9.02330 -8.46445 -6.73168 -5.82423 -3.24755 -0.46899 0.58565 1.25046 1.75514 2.91066 2.97480 3.36863 3.45160 3.48739 3.66392 4.29459 4.46506 4.58670 4.84449 4.97570 4.98264 5.18314 5.31315 5.45501 5.51715 5.52696 5.54247 5.61053 5.69554 5.73161 5.90512 5.96808 6.01210 6.08419 6.14546 6.22558 6.40932 6.50957 6.54803 6.59246 6.74311 6.86039 7.29215 7.36762 7.48713 7.60121 7.79931 8.05799 8.41312 9.17815 9.79845 10.34885 11.26328 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.003314 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.365600 B = 8446.530463 C = 9522.405134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.106 3.894 5 N -0.244 5.244 6 N -0.257 5.257 7 S 0.404 5.596 8 C -0.281 4.281 9 C 0.598 3.402 10 O -0.506 6.506 11 N -0.710 5.710 12 C 0.125 3.875 13 H 0.092 0.908 14 C -0.116 4.116 15 C -0.139 4.139 16 C 0.166 3.834 17 N -0.586 5.586 18 C -0.252 4.252 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.141 3.859 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.125 0.875 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.059 0.941 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 13.476 13.238 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.198 4.198 4 C -0.041 4.041 5 N -0.110 5.110 6 N -0.237 5.237 7 S 0.540 5.460 8 C -0.422 4.422 9 C 0.380 3.620 10 O -0.382 6.382 11 N -0.361 5.361 12 C 0.021 3.979 13 H 0.110 0.890 14 C -0.154 4.154 15 C -0.179 4.179 16 C 0.041 3.959 17 N -0.309 5.309 18 C -0.381 4.381 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.013 3.987 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.353 13.550 14.315 19.714 hybrid contribution -0.231 -0.116 -1.621 1.641 sum 0.122 13.434 12.694 18.483 Atomic orbital electron populations 1.21803 0.93118 1.02398 1.02614 1.20194 0.96730 0.96101 0.92174 1.21800 1.01116 0.94283 1.02648 1.22957 0.94401 0.92558 0.94143 1.70531 1.19896 1.24304 0.96221 1.78916 1.13324 1.07165 1.24291 1.82520 1.39982 1.28630 0.94843 1.27929 1.10204 1.04049 0.99975 1.16437 0.79042 0.80287 0.86195 1.90809 1.57454 1.66729 1.23217 1.46071 1.51035 1.28132 1.10851 1.21912 0.95277 0.94466 0.86261 0.89011 1.21696 0.95523 0.98745 0.99442 1.22180 0.99397 1.00036 0.96275 1.20854 0.83617 0.90808 1.00655 1.44002 1.20596 1.55781 1.10537 1.19262 1.25185 1.00048 0.93641 0.91424 1.25020 1.00797 0.94564 0.99134 1.70046 1.49456 1.00870 1.34374 0.86221 0.77697 0.77618 0.85285 1.20111 1.21504 1.21712 1.21188 0.94053 0.91831 0.91596 0.91321 0.92488 0.91975 0.85740 0.92683 0.91334 0.91963 0.77268 0.92052 0.92898 0.92556 0.92312 0.89174 0.96232 0.93668 0.92200 0.96349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.16 37.16 0.34 -1.11 16 2 C -0.03 -0.35 3.25 -91.77 -0.30 -0.65 16 3 C -0.14 -1.37 9.16 37.16 0.34 -1.03 16 4 C 0.11 1.33 5.53 -82.84 -0.46 0.87 16 5 N -0.24 -3.12 11.51 33.42 0.38 -2.73 16 6 N -0.26 -3.08 12.51 60.35 0.75 -2.32 16 7 S 0.40 3.82 23.05 -107.50 -2.48 1.34 16 8 C -0.28 -3.42 6.81 -35.95 -0.24 -3.67 16 9 C 0.60 8.57 7.77 -12.63 -0.10 8.47 16 10 O -0.51 -8.90 14.21 5.26 0.07 -8.83 16 11 N -0.71 -9.37 5.08 -54.85 -0.28 -9.65 16 12 C 0.13 2.07 2.60 -67.81 -0.18 1.89 16 13 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 14 C -0.12 -1.71 5.36 -26.69 -0.14 -1.85 16 15 C -0.14 -2.43 6.08 -26.61 -0.16 -2.59 16 16 C 0.17 3.76 5.31 -3.71 -0.02 3.74 16 17 N -0.59 -14.31 2.99 -172.32 -0.52 -14.83 16 18 C -0.25 -6.87 9.59 -15.06 -0.14 -7.02 16 19 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 21 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 22 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.14 2.90 6.09 -3.71 -0.02 2.88 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.12 1.66 5.49 -51.93 -0.29 1.38 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.39 3.96 8.03 -40.82 -0.33 3.64 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 43 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -30.72 362.03 -8.54 -39.26 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.35 Total: 0.86 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.17 Total: -0.05 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.97 Total: -54.58 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.48 Total: 1.34 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.72 -8.54 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008946341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.027 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds