Wall clock time and date at job start Tue Mar 31 2020 13:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47167 * 2 1 4 4 C 1.50697 * 109.46980 * 120.00138 * 2 1 3 5 5 N 1.31240 * 124.05200 * 300.02332 * 4 2 1 6 6 N 1.27340 * 120.03654 * 179.97438 * 5 4 2 7 7 S 1.56636 * 109.73955 * 359.69515 * 6 5 4 8 8 C 1.38248 * 124.05923 * 120.00225 * 4 2 1 9 9 C 1.47173 * 128.47245 * 0.02562 * 8 4 2 10 10 O 1.21617 * 120.00078 * 0.02562 * 9 8 4 11 11 N 1.34778 * 119.99745 * 180.02562 * 9 8 4 12 12 C 1.46501 * 119.99792 * 180.28006 * 11 9 8 13 13 H 1.08997 * 109.49432 * 324.65903 * 12 11 9 14 14 C 1.53041 * 109.49615 * 204.56372 * 12 11 9 15 15 C 1.53038 * 109.53710 * 178.68380 * 14 12 11 16 16 C 1.53190 * 109.31448 * 61.36582 * 15 14 12 17 17 N 1.46931 * 108.77501 * 305.36543 * 16 15 14 18 18 C 1.36943 * 120.63022 * 233.63452 * 17 16 15 19 19 H 1.07992 * 119.99926 * 27.65865 * 18 17 16 20 20 C 1.38811 * 119.99821 * 207.66418 * 18 17 16 21 21 N 1.31621 * 120.00013 * 17.36060 * 20 18 17 22 22 Si 1.86800 * 119.99855 * 197.35928 * 20 18 17 23 23 H 1.48506 * 109.47132 * 90.00038 * 22 20 18 24 24 H 1.48496 * 109.46931 * 209.99624 * 22 20 18 25 25 H 1.48492 * 109.47299 * 329.99863 * 22 20 18 26 26 C 1.46926 * 118.73931 * 53.60746 * 17 16 15 27 27 H 1.08999 * 109.47014 * 300.00455 * 1 2 3 28 28 H 1.09002 * 109.46940 * 60.00286 * 1 2 3 29 29 H 1.09005 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47014 * 239.99545 * 2 1 3 31 31 H 1.09002 * 109.46957 * 299.99704 * 3 2 1 32 32 H 1.08999 * 109.47525 * 59.99858 * 3 2 1 33 33 H 1.08999 * 109.46997 * 179.97438 * 3 2 1 34 34 H 0.96996 * 120.00016 * 359.97438 * 11 9 8 35 35 H 1.09009 * 109.45706 * 298.70056 * 14 12 11 36 36 H 1.08992 * 109.46068 * 58.65928 * 14 12 11 37 37 H 1.08996 * 109.49695 * 301.41378 * 15 14 12 38 38 H 1.08998 * 109.49663 * 181.31486 * 15 14 12 39 39 H 1.08998 * 109.58812 * 185.58186 * 16 15 14 40 40 H 1.09003 * 109.70967 * 65.21933 * 16 15 14 41 41 H 0.97005 * 119.99705 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.58758 * 186.61044 * 26 17 16 43 43 H 1.08998 * 109.58915 * 66.17955 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7643 -0.3322 2.4582 6 7 2.2294 -0.9908 3.4439 7 16 3.0753 -2.2005 2.9200 8 6 2.8303 -1.8390 1.2013 9 6 3.3453 -2.5663 0.0301 10 8 3.0749 -2.1819 -1.0916 11 7 4.1167 -3.6582 0.2006 12 6 4.6345 -4.3786 -0.9652 13 1 3.8949 -4.3546 -1.7655 14 6 4.9249 -5.8311 -0.5805 15 6 5.4348 -6.5930 -1.8060 16 6 6.7377 -5.9525 -2.2947 17 7 6.5024 -4.5212 -2.5289 18 6 6.8116 -3.9515 -3.7351 19 1 6.7990 -4.5499 -4.6340 20 6 7.1414 -2.6048 -3.8024 21 7 7.4909 -1.9575 -2.7109 22 14 7.0890 -1.7111 -5.4419 23 1 5.7360 -1.1351 -5.6488 24 1 8.0968 -0.6205 -5.4436 25 1 7.3925 -2.6673 -6.5367 26 6 5.9284 -3.7130 -1.4444 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4424 0.0005 34 1 4.3328 -3.9645 1.0953 35 1 5.6824 -5.8548 0.2029 36 1 4.0109 -6.2999 -0.2159 37 1 4.6879 -6.5486 -2.5986 38 1 5.6192 -7.6330 -1.5370 39 1 7.0525 -6.4278 -3.2238 40 1 7.5140 -6.0764 -1.5396 41 1 7.7210 -1.0163 -2.7579 42 1 5.7091 -2.7107 -1.8124 43 1 6.6368 -3.6543 -0.6181 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008946348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:31 Heat of formation + Delta-G solvation = 45.162540 kcal Electronic energy + Delta-G solvation = -25913.687909 eV Core-core repulsion = 22314.745670 eV Total energy + Delta-G solvation = -3598.942239 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13771 -39.51995 -37.41203 -35.59406 -34.30003 -32.80003 -31.36177 -30.09624 -29.08965 -27.27050 -27.16444 -25.33151 -23.72607 -22.31427 -22.08969 -21.30296 -20.26986 -19.37758 -17.96587 -17.33074 -16.82616 -16.01765 -15.74478 -15.23480 -14.97570 -14.41315 -14.27180 -14.17478 -13.99113 -13.56132 -13.18427 -13.09462 -13.03097 -12.53952 -12.42929 -12.37031 -12.19180 -11.99039 -11.29788 -11.26918 -11.08760 -10.98197 -10.86198 -10.75817 -10.56476 -10.39275 -10.28500 -10.06348 -10.00028 -9.90183 -9.79174 -9.64773 -9.58805 -8.76451 -8.47927 -6.72010 -5.80454 -3.23691 -0.32704 0.72137 1.38208 1.89503 3.07390 3.19380 3.40973 3.47499 3.48122 3.79938 4.44089 4.49884 4.72533 4.98179 5.10377 5.11463 5.25728 5.32850 5.46787 5.55179 5.58292 5.63592 5.66717 5.81136 5.86241 5.98267 6.02870 6.05551 6.21861 6.23876 6.31071 6.35394 6.41199 6.59531 6.66363 6.76173 6.89750 7.17567 7.52682 7.63584 7.65173 7.79683 8.26533 8.42996 9.17800 9.81691 10.36011 11.27609 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.004354 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.547069 B = 6429.425634 C = 7868.247927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.105 3.895 5 N -0.244 5.244 6 N -0.259 5.259 7 S 0.399 5.601 8 C -0.275 4.275 9 C 0.597 3.403 10 O -0.502 6.502 11 N -0.708 5.708 12 C 0.116 3.884 13 H 0.088 0.912 14 C -0.117 4.117 15 C -0.130 4.130 16 C 0.141 3.859 17 N -0.587 5.587 18 C -0.258 4.258 19 H 0.068 0.932 20 C 0.008 3.992 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.165 3.835 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.391 0.609 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.254 0.746 42 H 0.097 0.903 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -2.480 10.652 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.042 4.042 5 N -0.110 5.110 6 N -0.240 5.240 7 S 0.536 5.464 8 C -0.416 4.416 9 C 0.379 3.621 10 O -0.377 6.377 11 N -0.359 5.359 12 C 0.012 3.988 13 H 0.106 0.894 14 C -0.155 4.155 15 C -0.170 4.170 16 C 0.015 3.985 17 N -0.310 5.310 18 C -0.387 4.387 19 H 0.085 0.915 20 C -0.191 4.191 21 N -0.543 5.543 22 Si 0.731 3.269 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.038 3.962 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.225 0.775 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.530 -2.069 11.816 15.962 hybrid contribution 0.050 0.596 -1.491 1.606 sum -10.480 -1.474 10.326 14.786 Atomic orbital electron populations 1.21794 0.93327 1.02076 1.02552 1.20189 0.96443 0.96313 0.92278 1.21798 1.01534 0.94130 1.02465 1.22930 0.94639 0.92564 0.94091 1.70515 1.19920 1.24281 0.96245 1.78897 1.13716 1.07059 1.24295 1.82459 1.40462 1.28464 0.95050 1.27972 1.09655 1.04032 0.99906 1.16411 0.79040 0.80497 0.86154 1.90817 1.58109 1.65671 1.23152 1.46006 1.50819 1.28424 1.10636 1.22145 0.99682 0.90857 0.86132 0.89434 1.21692 1.00188 0.94757 0.98887 1.21997 1.00242 0.97813 0.96965 1.20972 0.92991 0.86232 0.98300 1.43958 1.70968 1.03361 1.12710 1.19166 1.41147 0.93492 0.84911 0.91478 1.25026 0.98711 0.98398 0.97006 1.70014 1.47446 1.09683 1.27133 0.86302 0.77561 0.79484 0.83507 1.21175 1.21765 1.20381 1.21120 0.88189 0.96792 0.90119 0.92009 0.91413 0.92736 0.85696 0.91387 0.92050 0.92374 0.77534 0.92062 0.92900 0.92003 0.92461 0.92535 0.96308 0.93608 0.88526 0.96325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.16 37.16 0.34 -1.22 16 2 C -0.03 -0.41 3.25 -91.77 -0.30 -0.71 16 3 C -0.14 -1.74 9.16 37.15 0.34 -1.39 16 4 C 0.10 1.49 5.53 -82.84 -0.46 1.04 16 5 N -0.24 -3.49 11.51 33.42 0.38 -3.10 16 6 N -0.26 -3.48 12.51 60.35 0.75 -2.72 16 7 S 0.40 4.39 23.05 -107.50 -2.48 1.91 16 8 C -0.27 -3.89 6.81 -35.95 -0.24 -4.14 16 9 C 0.60 9.95 7.77 -12.63 -0.10 9.85 16 10 O -0.50 -10.17 14.21 5.26 0.07 -10.10 16 11 N -0.71 -10.78 5.08 -54.85 -0.28 -11.06 16 12 C 0.12 2.11 2.60 -67.81 -0.18 1.93 16 13 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 14 C -0.12 -1.73 5.35 -26.69 -0.14 -1.87 16 15 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 16 C 0.14 2.79 6.52 -3.71 -0.02 2.76 16 17 N -0.59 -14.32 3.00 -172.32 -0.52 -14.83 16 18 C -0.26 -7.02 9.59 -15.06 -0.14 -7.16 16 19 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 20 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 21 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 22 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.17 3.82 4.88 -3.71 -0.02 3.80 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.13 1.95 5.49 -51.93 -0.29 1.67 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.39 4.63 8.03 -40.82 -0.33 4.30 16 35 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.10 7.93 -51.93 -0.41 0.68 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.10 2.65 6.04 -51.93 -0.31 2.33 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -31.42 362.02 -8.54 -39.95 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.35 Total: 2.24 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.17 Total: 0.81 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.97 Total: -57.21 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.48 Total: 1.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.42 -8.54 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008946348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.116 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds