Wall clock time and date at job start Tue Mar 31 2020 13:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47166 * 2 1 4 4 C 1.50704 * 109.47385 * 119.99879 * 2 1 3 5 5 N 1.31240 * 124.05497 * 300.19074 * 4 2 1 6 6 N 1.27334 * 120.03713 * 180.36611 * 5 4 2 7 7 S 1.56640 * 109.74003 * 359.69071 * 6 5 4 8 8 C 1.38240 * 124.05554 * 120.00021 * 4 2 1 9 9 C 1.47177 * 128.47618 * 359.97438 * 8 4 2 10 10 O 1.21618 * 119.99802 * 359.70708 * 9 8 4 11 11 N 1.34779 * 120.00007 * 179.70406 * 9 8 4 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 H 1.08993 * 110.89211 * 54.29549 * 13 12 11 15 15 C 1.55160 * 111.00031 * 178.18014 * 13 12 11 16 16 C 1.54332 * 102.94119 * 153.57436 * 15 13 12 17 17 N 1.47021 * 107.26694 * 337.80439 * 16 15 13 18 18 C 1.36946 * 125.64138 * 178.97270 * 17 16 15 19 19 H 1.08003 * 119.99241 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00329 * 359.97438 * 18 17 16 21 21 N 1.31620 * 119.99661 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46871 * 90.00180 * 22 20 18 24 24 H 1.48501 * 109.47009 * 210.00174 * 22 20 18 25 25 H 1.48493 * 109.47096 * 330.00210 * 22 20 18 26 26 C 1.47458 * 108.72856 * 358.97503 * 17 16 15 27 27 H 1.09000 * 109.47302 * 299.99845 * 1 2 3 28 28 H 1.08995 * 109.47075 * 60.00386 * 1 2 3 29 29 H 1.09008 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47302 * 240.00155 * 2 1 3 31 31 H 1.08998 * 109.47059 * 300.00239 * 3 2 1 32 32 H 1.09000 * 109.46883 * 59.99899 * 3 2 1 33 33 H 1.08999 * 109.47499 * 179.97438 * 3 2 1 34 34 H 0.97000 * 119.99708 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 36 36 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 37 37 H 1.08998 * 110.71543 * 271.93297 * 15 13 12 38 38 H 1.08993 * 110.72586 * 35.03120 * 15 13 12 39 39 H 1.09004 * 109.88129 * 97.22085 * 16 15 13 40 40 H 1.08995 * 109.87820 * 218.23329 * 16 15 13 41 41 H 0.96998 * 119.99595 * 179.97438 * 21 20 18 42 42 H 1.08996 * 110.35186 * 265.25331 * 26 17 16 43 43 H 1.09000 * 110.41010 * 142.91607 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7619 -0.3340 2.4583 6 7 2.2334 -0.9880 3.4439 7 16 3.0895 -2.1906 2.9200 8 6 2.8304 -1.8388 1.2013 9 6 3.3445 -2.5668 0.0301 10 8 3.0682 -2.1865 -1.0916 11 7 4.1214 -3.6549 0.2005 12 6 4.6335 -4.3791 -0.9654 13 6 5.4803 -5.5646 -0.4977 14 1 4.9180 -6.1969 0.1893 15 6 6.0042 -6.3848 -1.7062 16 6 7.2933 -7.0289 -1.1539 17 7 7.7368 -6.2110 -0.0156 18 6 8.8356 -6.4571 0.7638 19 1 9.0781 -5.7929 1.5803 20 6 9.6376 -7.5600 0.5045 21 7 9.3417 -8.3695 -0.4902 22 14 11.1368 -7.8952 1.5673 23 1 10.7491 -8.7578 2.7121 24 1 12.1737 -8.5838 0.7574 25 1 11.6794 -6.6104 2.0771 26 6 6.8029 -5.0816 0.1483 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4426 0.0005 34 1 4.3420 -3.9579 1.0952 35 1 5.2467 -3.7096 -1.5685 36 1 3.7977 -4.7434 -1.5628 37 1 5.2835 -7.1501 -1.9942 38 1 6.2273 -5.7304 -2.5488 39 1 7.0862 -8.0461 -0.8211 40 1 8.0620 -7.0410 -1.9265 41 1 9.9023 -9.1400 -0.6716 42 1 7.1791 -4.2002 -0.3710 43 1 6.6513 -4.8641 1.2056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028887366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:19 Heat of formation + Delta-G solvation = 48.003512 kcal Electronic energy + Delta-G solvation = -24820.050942 eV Core-core repulsion = 21221.231897 eV Total energy + Delta-G solvation = -3598.819045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.36474 -39.75399 -37.75080 -35.87709 -34.85303 -32.68796 -31.53651 -29.90382 -28.57914 -27.55645 -27.40331 -25.65598 -24.11288 -22.97729 -21.94678 -20.82553 -20.07712 -19.78757 -18.21604 -17.71412 -16.83785 -16.30927 -16.12027 -15.60375 -15.30073 -14.87640 -14.60983 -14.47731 -14.19415 -13.65421 -13.41739 -13.23953 -13.19706 -12.63667 -12.42898 -12.42068 -12.10974 -11.83718 -11.54097 -11.52458 -11.48171 -11.23513 -10.95745 -10.84043 -10.64964 -10.47819 -10.22363 -10.12855 -10.10228 -10.03156 -9.98252 -9.89999 -9.71577 -9.23462 -8.65000 -6.89132 -5.76343 -3.10234 -0.55248 0.51826 1.18628 1.66158 2.73509 2.79876 3.36496 3.41767 3.43699 3.57819 4.18610 4.41037 4.46002 4.73210 4.85907 4.86911 4.98059 5.11308 5.31357 5.40785 5.41121 5.47645 5.58305 5.58864 5.61803 5.76651 5.78925 5.89818 5.94630 5.96716 6.07608 6.20821 6.25786 6.40703 6.44968 6.57787 6.81175 7.14753 7.38376 7.50748 7.57058 7.77681 7.82596 8.20765 9.16944 9.77209 10.42550 11.35389 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.002643 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.200082 B =10591.760316 C =11453.131784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 C -0.142 4.142 4 C 0.108 3.892 5 N -0.246 5.246 6 N -0.254 5.254 7 S 0.419 5.581 8 C -0.290 4.290 9 C 0.601 3.399 10 O -0.517 6.517 11 N -0.713 5.713 12 C 0.133 3.867 13 C -0.120 4.120 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.177 3.823 17 N -0.606 5.606 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.141 3.859 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.401 0.599 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 13.363 1.663 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.039 4.039 5 N -0.111 5.111 6 N -0.235 5.235 7 S 0.556 5.444 8 C -0.431 4.431 9 C 0.384 3.616 10 O -0.394 6.394 11 N -0.364 5.364 12 C 0.010 3.990 13 C -0.140 4.140 14 H 0.100 0.900 15 C -0.173 4.173 16 C 0.052 3.948 17 N -0.332 5.332 18 C -0.359 4.359 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.014 3.986 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.618 13.426 2.860 21.555 hybrid contribution 0.858 -0.262 -0.251 0.932 sum -15.760 13.164 2.609 20.700 Atomic orbital electron populations 1.21803 0.93165 1.02231 1.02708 1.20178 0.96640 0.96183 0.92101 1.21808 1.01264 0.94190 1.02705 1.22952 0.94371 0.92400 0.94212 1.70546 1.20083 1.24309 0.96160 1.78904 1.13093 1.07196 1.24308 1.82716 1.39229 1.28131 0.94367 1.27828 1.10651 1.04434 1.00197 1.16423 0.78737 0.80165 0.86244 1.90767 1.58493 1.66688 1.23420 1.45990 1.50640 1.28363 1.11376 1.21547 0.97616 0.93202 0.86665 1.22654 0.96504 0.95407 0.99439 0.90022 1.22858 0.99641 0.98622 0.96145 1.21150 0.90297 0.93792 0.89530 1.44477 1.28053 1.26202 1.34478 1.19047 1.00441 1.07718 1.08661 0.90464 1.24808 0.99385 0.97615 0.98602 1.69960 1.39684 1.16465 1.30783 0.86119 0.82335 0.77907 0.79396 1.21577 1.21645 1.20693 1.21596 0.88264 0.91577 0.97125 0.91859 0.91372 0.92639 0.85911 0.91348 0.91869 0.92563 0.76408 0.90653 0.90965 0.91877 0.92093 0.93505 0.93831 0.93707 0.96231 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.16 37.16 0.34 -0.84 16 2 C -0.03 -0.29 3.25 -91.77 -0.30 -0.59 16 3 C -0.14 -1.22 9.16 37.16 0.34 -0.88 16 4 C 0.11 1.22 5.53 -82.84 -0.46 0.76 16 5 N -0.25 -2.95 11.51 33.42 0.38 -2.57 16 6 N -0.25 -2.96 12.51 60.35 0.75 -2.20 16 7 S 0.42 3.88 23.05 -107.50 -2.48 1.40 16 8 C -0.29 -3.20 6.81 -35.95 -0.24 -3.44 16 9 C 0.60 7.36 7.80 -12.63 -0.10 7.26 16 10 O -0.52 -7.49 14.54 5.26 0.08 -7.42 16 11 N -0.71 -8.09 5.45 -61.46 -0.33 -8.42 16 12 C 0.13 1.67 5.12 -4.04 -0.02 1.65 16 13 C -0.12 -1.81 3.07 -88.47 -0.27 -2.08 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.13 -2.26 6.42 -24.89 -0.16 -2.42 16 16 C 0.18 4.09 5.37 -3.06 -0.02 4.07 16 17 N -0.61 -14.75 3.40 -170.04 -0.58 -15.33 16 18 C -0.23 -6.22 10.28 -15.06 -0.15 -6.38 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.50 10.31 55.49 0.57 -25.92 16 22 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 C 0.14 2.63 6.56 -2.51 -0.02 2.62 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.12 1.37 5.49 -51.93 -0.29 1.08 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 3.92 7.86 -40.82 -0.32 3.60 16 35 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 39 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 40 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -31.23 365.48 -8.67 -39.90 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.40 Total: -0.98 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.15 Total: -0.58 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.80 Total: -54.44 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.48 Total: 1.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.23 -8.67 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028887366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.903 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds