Wall clock time and date at job start Tue Mar 31 2020 13:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 C 1.50699 * 109.47188 * 120.00051 * 2 1 3 5 5 N 1.31243 * 124.05610 * 300.18748 * 4 2 1 6 6 N 1.27336 * 120.03731 * 180.36791 * 5 4 2 7 7 S 1.56639 * 109.73993 * 359.69394 * 6 5 4 8 8 C 1.38248 * 124.05652 * 119.99917 * 4 2 1 9 9 C 1.47170 * 128.47412 * 359.97438 * 8 4 2 10 10 O 1.21627 * 120.00089 * 7.03731 * 9 8 4 11 11 N 1.34777 * 120.00001 * 187.04145 * 9 8 4 12 12 C 1.46498 * 120.00035 * 5.52459 * 11 9 8 13 13 C 1.46505 * 119.99910 * 185.52698 * 11 9 8 14 14 H 1.08999 * 110.64095 * 1.68481 * 13 11 9 15 15 C 1.55150 * 110.72032 * 125.02499 * 13 11 9 16 16 C 1.55121 * 101.48987 * 82.69357 * 15 13 11 17 17 N 1.47425 * 104.72288 * 37.29278 * 16 15 13 18 18 C 1.36932 * 125.65005 * 155.81598 * 17 16 15 19 19 H 1.08006 * 120.00326 * 190.80569 * 18 17 16 20 20 C 1.38813 * 119.99949 * 10.81291 * 18 17 16 21 21 N 1.31620 * 119.99820 * 205.86758 * 20 18 17 22 22 Si 1.86792 * 120.00088 * 25.86772 * 20 18 17 23 23 H 1.48498 * 109.47205 * 270.00121 * 22 20 18 24 24 H 1.48497 * 109.47395 * 30.00039 * 22 20 18 25 25 H 1.48503 * 109.47674 * 150.00032 * 22 20 18 26 26 C 1.47026 * 108.70190 * 335.55730 * 17 16 15 27 27 H 1.09000 * 109.47192 * 60.00230 * 1 2 3 28 28 H 1.09007 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47089 * 299.99568 * 1 2 3 30 30 H 1.08998 * 109.47089 * 240.00432 * 2 1 3 31 31 H 1.08999 * 109.46988 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.46898 * 300.00329 * 3 2 1 33 33 H 1.08998 * 109.46868 * 60.00296 * 3 2 1 34 34 H 1.08998 * 109.47029 * 274.94691 * 12 11 9 35 35 H 1.08999 * 109.46928 * 34.94500 * 12 11 9 36 36 H 1.08996 * 109.47355 * 154.94589 * 12 11 9 37 37 H 1.09002 * 111.00529 * 200.93346 * 15 13 11 38 38 H 1.09000 * 111.00319 * 324.74035 * 15 13 11 39 39 H 1.09005 * 110.50012 * 278.45399 * 16 15 13 40 40 H 1.09004 * 110.34723 * 156.05780 * 16 15 13 41 41 H 0.97003 * 120.00270 * 354.93586 * 21 20 18 42 42 H 1.09000 * 109.88602 * 120.70433 * 26 17 16 43 43 H 1.09000 * 109.88077 * 241.86956 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7619 -0.3341 2.4583 6 7 2.2334 -0.9881 3.4439 7 16 3.0895 -2.1906 2.9199 8 6 2.8303 -1.8390 1.2013 9 6 3.3444 -2.5669 0.0300 10 8 3.1816 -2.1140 -1.0870 11 7 3.9955 -3.7353 0.1952 12 6 4.0863 -4.3415 1.5258 13 6 4.6124 -4.3992 -0.9559 14 1 4.4788 -3.8045 -1.8595 15 6 6.1165 -4.6722 -0.6910 16 6 6.0524 -5.9896 0.1255 17 7 4.9513 -6.7560 -0.4859 18 6 4.8060 -8.1169 -0.4427 19 1 4.0667 -8.6011 -1.0635 20 6 5.6089 -8.8742 0.3993 21 7 5.8576 -10.1347 0.1133 22 14 6.3362 -8.1045 1.9380 23 1 7.6595 -7.5121 1.6171 24 1 5.4265 -7.0425 2.4377 25 1 6.5008 -9.1470 2.9827 26 6 4.0318 -5.8166 -1.1444 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 4.9336 -3.9145 2.0625 35 1 3.1684 -4.1428 2.0790 36 1 4.2246 -5.4180 1.4260 37 1 6.6585 -4.8141 -1.6260 38 1 6.5613 -3.8701 -0.1020 39 1 5.8328 -5.7796 1.1723 40 1 6.9908 -6.5369 0.0362 41 1 5.4219 -10.5553 -0.6445 42 1 3.9612 -6.0501 -2.2067 43 1 3.0462 -5.8778 -0.6830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033519081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:22 Heat of formation + Delta-G solvation = 75.406206 kcal Electronic energy + Delta-G solvation = -26190.582936 eV Core-core repulsion = 22592.952160 eV Total energy + Delta-G solvation = -3597.630775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24490 -40.17630 -37.91955 -35.74350 -34.87691 -32.57832 -31.32403 -29.71762 -28.79944 -27.73835 -27.34446 -26.56312 -24.20649 -23.41752 -22.05317 -21.07227 -20.34618 -19.10064 -18.38826 -17.61528 -17.15743 -16.54693 -16.25734 -15.55524 -15.24368 -15.10968 -14.68380 -14.46431 -13.88840 -13.60704 -13.44626 -13.26856 -13.17237 -12.86582 -12.66630 -12.52389 -12.36073 -12.19069 -11.93348 -11.47447 -11.45932 -11.40797 -11.25775 -11.13484 -11.09057 -10.96594 -10.22958 -10.10796 -9.94257 -9.93740 -9.83787 -9.72272 -9.36187 -8.75604 -8.57940 -7.20259 -6.42206 -3.29311 -0.43407 0.62269 1.33982 1.77427 2.70714 2.80356 3.29518 3.35996 3.55168 3.69066 4.18979 4.32276 4.49131 4.80338 4.84014 4.88778 4.92593 4.94276 4.97503 5.12221 5.31273 5.33718 5.46260 5.47002 5.49559 5.64587 5.67842 5.70784 5.73610 5.83067 5.84238 6.02488 6.07831 6.12876 6.19789 6.41791 6.42343 6.57575 6.64906 7.15634 7.51267 7.59384 7.85903 8.24877 8.94225 9.48499 10.14328 11.06423 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021230 B = 0.003793 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.559057 B = 7380.465195 C = 8093.405505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.028 4.028 3 C -0.140 4.140 4 C 0.106 3.894 5 N -0.247 5.247 6 N -0.278 5.278 7 S 0.434 5.566 8 C -0.292 4.292 9 C 0.601 3.399 10 O -0.520 6.520 11 N -0.585 5.585 12 C 0.048 3.952 13 C 0.127 3.873 14 H 0.112 0.888 15 C -0.139 4.139 16 C 0.094 3.906 17 N -0.607 5.607 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.019 4.019 21 N -0.918 5.918 22 Si 1.063 2.937 23 H -0.293 1.293 24 H -0.288 1.288 25 H -0.298 1.298 26 C 0.126 3.874 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.121 0.879 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.264 0.736 42 H 0.044 0.956 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 19.691 2.629 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 C -0.198 4.198 4 C -0.042 4.042 5 N -0.113 5.113 6 N -0.258 5.258 7 S 0.573 5.427 8 C -0.432 4.432 9 C 0.387 3.613 10 O -0.398 6.398 11 N -0.317 5.317 12 C -0.097 4.097 13 C 0.025 3.975 14 H 0.130 0.870 15 C -0.179 4.179 16 C -0.031 4.031 17 N -0.335 5.335 18 C -0.459 4.459 19 H 0.094 0.906 20 C -0.220 4.220 21 N -0.558 5.558 22 Si 0.895 3.105 23 H -0.221 1.221 24 H -0.215 1.215 25 H -0.225 1.225 26 C 0.000 4.000 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.278 19.507 5.338 20.672 hybrid contribution -1.197 0.333 -2.376 2.681 sum -5.475 19.841 2.962 20.794 Atomic orbital electron populations 1.21810 0.93255 1.02251 1.02649 1.20138 0.96536 0.96139 0.92141 1.21785 1.01162 0.94230 1.02594 1.22918 0.94348 0.92507 0.94429 1.70652 1.20273 1.24364 0.95978 1.78676 1.14157 1.08009 1.24923 1.83139 1.39643 1.25488 0.94464 1.27757 1.10932 1.04480 1.00073 1.16495 0.78164 0.80411 0.86250 1.90743 1.57802 1.67558 1.23704 1.47667 1.53193 1.20804 1.10012 1.22501 1.00790 1.03563 0.82861 1.22282 0.93054 0.94265 0.87934 0.86978 1.23141 0.94630 0.98318 1.01775 1.22306 0.93612 0.91532 0.95647 1.44849 1.22258 1.02603 1.63766 1.20007 1.23502 0.79207 1.23145 0.90600 1.25838 0.98109 0.96075 1.01964 1.70893 1.38922 1.13876 1.32124 0.83881 0.75566 0.74120 0.76948 1.22075 1.21493 1.22548 1.21682 0.93769 0.87096 0.97487 0.91427 0.92650 0.91846 0.86080 0.92653 0.91451 0.91910 0.91421 0.91990 0.85933 0.89556 0.91055 0.94662 0.91846 0.92552 0.93852 0.94821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.16 37.16 0.34 -1.01 16 2 C -0.03 -0.30 3.25 -91.77 -0.30 -0.60 16 3 C -0.14 -1.31 9.16 37.16 0.34 -0.97 16 4 C 0.11 1.33 5.53 -82.84 -0.46 0.88 16 5 N -0.25 -3.29 11.51 33.42 0.38 -2.90 16 6 N -0.28 -3.60 12.51 60.35 0.75 -2.84 16 7 S 0.43 4.75 19.09 -107.50 -2.05 2.70 16 8 C -0.29 -3.74 6.43 -35.95 -0.23 -3.97 16 9 C 0.60 8.59 7.65 -12.63 -0.10 8.49 16 10 O -0.52 -8.30 13.97 5.25 0.07 -8.23 16 11 N -0.59 -8.37 2.82 -173.20 -0.49 -8.86 16 12 C 0.05 0.63 7.16 59.85 0.43 1.06 16 13 C 0.13 1.96 3.58 -66.10 -0.24 1.73 16 14 H 0.11 1.67 7.01 -51.93 -0.36 1.31 16 15 C -0.14 -2.11 6.54 -24.47 -0.16 -2.27 16 16 C 0.09 1.80 3.81 -2.41 -0.01 1.79 16 17 N -0.61 -13.50 2.86 -169.93 -0.49 -13.99 16 18 C -0.33 -8.89 10.44 -15.06 -0.16 -9.05 16 19 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 20 C -0.02 -0.53 5.41 -17.43 -0.09 -0.62 16 21 N -0.92 -27.59 13.70 55.49 0.76 -26.83 16 22 Si 1.06 24.51 24.69 -169.99 -4.20 20.31 16 23 H -0.29 -6.40 6.56 56.52 0.37 -6.03 16 24 H -0.29 -5.87 5.85 56.52 0.33 -5.54 16 25 H -0.30 -7.10 7.11 56.52 0.40 -6.69 16 26 C 0.13 2.36 6.29 -3.06 -0.02 2.34 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.12 1.49 5.53 -51.93 -0.29 1.20 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.75 7.72 -51.93 -0.40 0.34 16 35 H 0.06 0.72 5.15 -31.21 -0.16 0.56 16 36 H 0.12 1.99 4.42 -51.93 -0.23 1.76 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.66 3.12 -51.93 -0.16 0.50 16 40 H 0.06 1.33 6.08 -51.93 -0.32 1.02 16 41 H 0.26 7.89 8.73 -40.82 -0.36 7.54 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -30.64 342.23 -6.57 -37.21 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.82 Total: 0.48 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -0.65 Total: -2.21 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.92 Total: -55.42 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.07 Total: -8.23 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.20 Total: 20.31 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -2.05 Total: 2.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.64 -6.57 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033519081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.612 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds