Wall clock time and date at job start Tue Mar 31 2020 13:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46709 * 2 1 4 4 C 1.50694 * 109.47209 * 119.99945 * 2 1 3 5 5 N 1.31242 * 124.05920 * 300.16820 * 4 2 1 6 6 N 1.27341 * 120.03976 * 180.33954 * 5 4 2 7 7 S 1.56636 * 109.73950 * 359.71684 * 6 5 4 8 8 C 1.38251 * 124.05574 * 120.00174 * 4 2 1 9 9 C 1.47173 * 128.47325 * 359.97438 * 8 4 2 10 10 O 1.21624 * 119.99799 * 4.78401 * 9 8 4 11 11 N 1.34769 * 119.99933 * 184.77950 * 9 8 4 12 12 C 1.46494 * 120.00170 * 354.71786 * 11 9 8 13 13 C 1.46502 * 119.99803 * 174.71916 * 11 9 8 14 14 H 1.08998 * 110.91915 * 9.02965 * 13 11 9 15 15 C 1.55154 * 111.00718 * 245.12136 * 13 11 9 16 16 C 1.54323 * 102.94196 * 277.42992 * 15 13 11 17 17 N 1.47025 * 107.27194 * 337.80546 * 16 15 13 18 18 C 1.36943 * 125.64739 * 178.90445 * 17 16 15 19 19 H 1.07994 * 119.99657 * 175.01647 * 18 17 16 20 20 C 1.38813 * 119.99872 * 355.02607 * 18 17 16 21 21 N 1.31615 * 119.99978 * 5.07457 * 20 18 17 22 22 Si 1.86803 * 119.99646 * 185.07728 * 20 18 17 23 23 H 1.48498 * 109.47031 * 94.99840 * 22 20 18 24 24 H 1.48502 * 109.47053 * 214.99947 * 22 20 18 25 25 H 1.48503 * 109.47075 * 334.99476 * 22 20 18 26 26 C 1.47419 * 108.70125 * 358.94037 * 17 16 15 27 27 H 1.09005 * 109.46704 * 299.99655 * 1 2 3 28 28 H 1.08997 * 109.47679 * 59.99590 * 1 2 3 29 29 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46947 * 240.00596 * 2 1 3 31 31 H 1.09000 * 109.46490 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47292 * 300.00070 * 3 2 1 33 33 H 1.09002 * 109.46787 * 60.00496 * 3 2 1 34 34 H 1.09001 * 109.47285 * 184.98159 * 12 11 9 35 35 H 1.09000 * 109.47396 * 304.98284 * 12 11 9 36 36 H 1.08998 * 109.47071 * 64.98259 * 12 11 9 37 37 H 1.08991 * 110.72425 * 159.06664 * 15 13 11 38 38 H 1.08998 * 110.71876 * 35.78899 * 15 13 11 39 39 H 1.09005 * 109.88419 * 97.22143 * 16 15 13 40 40 H 1.09000 * 109.88622 * 218.23138 * 16 15 13 41 41 H 0.97009 * 119.99570 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.36592 * 142.96686 * 26 17 16 43 43 H 1.09002 * 110.36937 * 265.28925 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7623 -0.3338 2.4583 6 7 2.2333 -0.9882 3.4439 7 16 3.0890 -2.1910 2.9200 8 6 2.8304 -1.8389 1.2013 9 6 3.3445 -2.5668 0.0300 10 8 3.1461 -2.1349 -1.0896 11 7 4.0352 -3.7118 0.1980 12 6 4.3744 -4.1714 1.5470 13 6 4.4469 -4.4967 -0.9685 14 1 4.2615 -3.9481 -1.8919 15 6 3.7372 -5.8763 -0.9891 16 6 4.6061 -6.7262 -0.0381 17 7 5.9323 -6.0944 0.0232 18 6 6.9897 -6.5300 0.7766 19 1 7.9498 -6.0428 0.6920 20 6 6.8274 -7.5976 1.6488 21 7 5.6876 -8.2549 1.6794 22 14 8.2269 -8.1013 2.7789 23 1 8.0519 -7.4522 4.1030 24 1 8.2213 -9.5768 2.9464 25 1 9.5200 -7.6754 2.1858 26 6 5.9348 -4.9140 -0.8599 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 5.0041 -5.0587 1.4809 35 1 4.9112 -3.3834 2.0752 36 1 3.4602 -4.4142 2.0886 37 1 3.7412 -6.2971 -1.9945 38 1 2.7191 -5.7919 -0.6092 39 1 4.1583 -6.7453 0.9556 40 1 4.6942 -7.7416 -0.4244 41 1 5.5741 -9.0008 2.2892 42 1 6.5228 -4.1102 -0.4170 43 1 6.3280 -5.1760 -1.8422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033519082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:25 Heat of formation + Delta-G solvation = 56.395309 kcal Electronic energy + Delta-G solvation = -26255.806082 eV Core-core repulsion = 22657.350933 eV Total energy + Delta-G solvation = -3598.455149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16380 -41.21290 -39.10251 -36.56495 -35.96699 -34.16831 -32.25185 -31.11425 -29.55998 -28.66926 -28.04908 -27.59362 -26.20926 -24.62960 -22.93776 -21.93522 -21.69286 -20.18814 -19.24575 -18.90043 -18.09211 -17.53937 -17.25941 -16.64671 -16.35382 -16.16990 -15.73108 -15.57434 -15.24161 -14.79020 -14.43838 -14.05921 -13.97227 -13.84655 -13.71687 -13.44801 -13.44586 -13.24061 -13.03363 -12.80710 -12.77163 -12.37834 -12.24754 -12.21949 -12.03171 -11.98999 -11.85857 -11.83006 -11.54772 -11.02799 -10.90034 -10.87130 -10.80792 -10.65929 -9.79715 -8.81729 -7.81488 -5.16749 -1.35793 -0.24842 0.45394 0.83319 1.51728 1.53979 1.60931 1.72630 1.79933 2.52859 2.80252 3.25607 3.38921 3.45216 3.66332 3.86932 3.97206 4.01970 4.13215 4.17918 4.18201 4.33175 4.42180 4.60162 4.69974 4.72752 4.80676 4.87069 4.93562 4.93997 4.96681 5.05419 5.13705 5.19010 5.31674 5.40590 5.49139 5.53993 5.69250 5.81755 6.19714 6.22335 6.59423 6.83766 7.14021 7.78624 8.42239 9.27694 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.003828 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.326810 B = 7313.046673 C = 8150.210610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.030 4.030 3 C -0.135 4.135 4 C 0.103 3.897 5 N -0.263 5.263 6 N -0.302 5.302 7 S 0.489 5.511 8 C -0.310 4.310 9 C 0.601 3.399 10 O -0.543 6.543 11 N -0.577 5.577 12 C 0.039 3.961 13 C 0.135 3.865 14 H 0.119 0.881 15 C -0.142 4.142 16 C 0.181 3.819 17 N -0.615 5.615 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.050 4.050 21 N -0.942 5.942 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.301 1.301 25 H -0.274 1.274 26 C 0.124 3.876 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.005 0.995 41 H 0.247 0.753 42 H 0.049 0.951 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 13.803 -2.315 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 C -0.193 4.193 4 C -0.045 4.045 5 N -0.127 5.127 6 N -0.282 5.282 7 S 0.627 5.373 8 C -0.451 4.451 9 C 0.388 3.612 10 O -0.423 6.423 11 N -0.307 5.307 12 C -0.106 4.106 13 C 0.031 3.969 14 H 0.137 0.863 15 C -0.181 4.181 16 C 0.056 3.944 17 N -0.342 5.342 18 C -0.368 4.368 19 H 0.099 0.901 20 C -0.244 4.244 21 N -0.590 5.590 22 Si 0.795 3.205 23 H -0.211 1.211 24 H -0.228 1.228 25 H -0.199 1.199 26 C -0.001 4.001 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.640 13.856 -0.717 15.839 hybrid contribution 0.686 -0.742 -0.409 1.090 sum -6.955 13.114 -1.126 14.886 Atomic orbital electron populations 1.21782 0.92099 1.01976 1.03538 1.20215 0.97484 0.96626 0.90864 1.21768 1.00634 0.93388 1.03509 1.23223 0.94193 0.92277 0.94814 1.70686 1.20827 1.25115 0.96090 1.78493 1.14524 1.09615 1.25536 1.83144 1.36638 1.24394 0.93110 1.27726 1.11791 1.04838 1.00705 1.16592 0.78085 0.80160 0.86396 1.90706 1.59727 1.67475 1.24373 1.47564 1.52967 1.21664 1.08528 1.22582 1.02284 1.04154 0.81547 1.22261 0.94842 0.91490 0.88302 0.86296 1.23162 0.98994 0.94713 1.01239 1.21020 0.84119 0.93076 0.96135 1.44823 1.10395 1.28427 1.50538 1.19322 0.90359 1.12386 1.14691 0.90072 1.25431 0.99176 0.98604 1.01169 1.70145 1.25336 1.23103 1.40434 0.85255 0.79333 0.76462 0.79428 1.21143 1.22840 1.19857 1.22019 0.94007 0.89521 0.94583 0.92026 0.89378 0.93477 0.87238 0.93477 0.89396 0.92033 0.85371 0.91188 0.91560 0.89302 0.90757 0.94992 0.97624 0.94346 0.93252 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.16 71.98 0.66 -1.92 16 2 C -0.03 -0.68 3.25 -11.54 -0.04 -0.71 16 3 C -0.14 -2.56 9.16 71.98 0.66 -1.90 16 4 C 0.10 2.77 5.53 42.65 0.24 3.00 16 5 N -0.26 -7.40 11.51 -48.18 -0.55 -7.96 16 6 N -0.30 -8.39 12.51 37.02 0.46 -7.93 16 7 S 0.49 11.97 18.77 -56.49 -1.06 10.91 16 8 C -0.31 -8.58 6.58 24.62 0.16 -8.42 16 9 C 0.60 18.24 7.65 86.59 0.66 18.91 16 10 O -0.54 -17.89 13.96 -4.11 -0.06 -17.95 16 11 N -0.58 -17.77 2.91 -819.02 -2.38 -20.15 16 12 C 0.04 1.21 7.66 127.77 0.98 2.19 16 13 C 0.13 4.25 3.65 46.38 0.17 4.42 16 14 H 0.12 3.51 7.05 -2.39 -0.02 3.49 16 15 C -0.14 -4.66 6.54 31.78 0.21 -4.45 16 16 C 0.18 7.80 4.32 86.73 0.37 8.18 16 17 N -0.61 -27.19 1.89 -691.98 -1.30 -28.50 16 18 C -0.24 -11.81 9.85 84.03 0.83 -10.98 16 19 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.05 -2.53 5.48 84.86 0.47 -2.07 16 21 N -0.94 -50.99 10.34 21.65 0.22 -50.76 16 22 Si 0.97 42.02 29.56 68.60 2.03 44.04 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 C 0.12 4.45 6.41 86.86 0.56 5.01 16 27 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 2.78 5.51 -2.39 -0.01 2.77 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.13 5.00 3.61 -2.39 -0.01 4.99 16 35 H 0.07 1.91 6.46 -4.32 -0.03 1.88 16 36 H 0.07 1.87 6.77 -2.40 -0.02 1.85 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.03 1.51 6.30 -2.38 -0.02 1.50 16 40 H 0.01 0.28 7.64 -2.39 -0.02 0.26 16 41 H 0.25 13.23 8.31 -92.70 -0.77 12.46 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -58.44 348.90 4.29 -54.14 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.02 Total: 12.91 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 5.92 Total: 11.25 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -3.56 Total: -115.30 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.06 Total: -17.95 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 11.97 SS G_CDS: -1.06 Total: 10.91 kcal Total: -58.44 4.29 -54.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033519082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.539 kcal (2) G-P(sol) polarization free energy of solvation -58.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds