Wall clock time and date at job start Tue Mar 31 2020 13:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46785 * 2 1 4 4 N 1.31240 * 124.05225 * 90.02762 * 3 2 1 5 5 N 1.27344 * 120.03849 * 179.97438 * 4 3 2 6 6 S 1.56640 * 109.73593 * 359.97438 * 5 4 3 7 7 C 1.38244 * 124.05655 * 269.98070 * 3 2 1 8 8 C 1.47162 * 128.47728 * 0.03906 * 7 3 2 9 9 O 1.21622 * 120.00069 * 0.02562 * 8 7 3 10 10 N 1.34780 * 120.00403 * 179.97438 * 8 7 3 11 11 C 1.46497 * 120.00167 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47101 * 35.00156 * 11 10 8 13 13 C 1.53002 * 109.47109 * 155.00134 * 11 10 8 14 14 C 1.52995 * 109.47326 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46933 * 299.99605 * 14 13 11 16 16 H 1.08999 * 109.47594 * 299.99982 * 15 14 13 17 17 N 1.46497 * 109.47015 * 179.97438 * 15 14 13 18 18 C 1.36935 * 119.99928 * 155.00368 * 17 15 14 19 19 H 1.08007 * 120.00283 * 359.97438 * 18 17 15 20 20 C 1.38819 * 120.00365 * 180.02562 * 18 17 15 21 21 N 1.31615 * 119.99415 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46815 * 90.00330 * 22 20 18 24 24 H 1.48500 * 109.47152 * 210.00132 * 22 20 18 25 25 H 1.48495 * 109.47002 * 330.00195 * 22 20 18 26 26 C 1.53002 * 109.46792 * 60.00068 * 15 14 13 27 27 C 1.52995 * 109.47326 * 299.99691 * 26 15 14 28 28 H 1.09003 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47531 * 299.99866 * 1 2 3 30 30 H 1.09009 * 109.47075 * 59.99949 * 1 2 3 31 31 H 1.08993 * 109.47090 * 240.00295 * 2 1 3 32 32 H 1.08997 * 109.46772 * 120.00213 * 2 1 3 33 33 H 0.97005 * 119.99453 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46982 * 299.99883 * 13 11 10 35 35 H 1.09003 * 109.47406 * 59.99149 * 13 11 10 36 36 H 1.08995 * 109.47577 * 59.99582 * 14 13 11 37 37 H 1.08998 * 109.47462 * 180.02562 * 14 13 11 38 38 H 0.97000 * 120.00320 * 335.00052 * 17 15 14 39 39 H 0.97008 * 119.99812 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.47406 * 60.00510 * 26 15 14 41 41 H 1.09001 * 109.46982 * 179.97438 * 26 15 14 42 42 H 1.08995 * 109.47577 * 300.00418 * 27 26 15 43 43 H 1.08998 * 109.47462 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2777 2.1135 1.0874 5 7 2.7015 3.3111 0.9982 6 16 2.8434 3.7111 -0.5096 7 6 2.2906 2.1506 -1.1453 8 6 2.1431 1.7343 -2.5491 9 8 1.7464 0.6153 -2.8131 10 7 2.4467 2.5933 -3.5423 11 6 2.2993 2.1790 -4.9397 12 1 1.4393 1.5160 -5.0333 13 6 2.0894 3.4138 -5.8184 14 6 1.9361 2.9812 -7.2779 15 6 3.1998 2.2448 -7.7269 16 1 4.0597 2.9080 -7.6330 17 7 3.0528 1.8300 -9.1242 18 6 4.1637 1.6294 -9.8994 19 1 5.1482 1.7774 -9.4807 20 6 4.0244 1.2369 -11.2236 21 7 2.8246 1.0581 -11.7342 22 14 5.5398 0.9640 -12.2812 23 1 5.9748 -0.4513 -12.1669 24 1 5.2163 1.2696 -13.6979 25 1 6.6330 1.8567 -11.8194 26 6 3.4098 1.0099 -6.8483 27 6 3.5631 1.4425 -5.3888 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7621 3.4862 -3.3318 34 1 1.1893 3.9388 -5.4982 35 1 2.9494 4.0770 -5.7247 36 1 1.0763 2.3180 -7.3719 37 1 1.7869 3.8610 -7.9039 38 1 2.1686 1.6974 -9.5004 39 1 2.7273 0.7841 -12.6597 40 1 2.5500 0.3466 -6.9423 41 1 4.3098 0.4850 -7.1684 42 1 4.4228 2.1058 -5.2947 43 1 3.7122 0.5628 -4.7628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034687156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:27 Heat of formation + Delta-G solvation = 25.818006 kcal Electronic energy + Delta-G solvation = -24831.023260 eV Core-core repulsion = 21231.242179 eV Total energy + Delta-G solvation = -3599.781081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.40212 -40.07164 -38.06503 -35.13200 -34.61863 -33.21812 -31.22790 -30.50067 -30.39173 -28.25537 -27.07595 -24.44200 -23.69856 -22.71845 -22.33485 -21.01760 -20.65793 -19.53799 -18.80388 -17.82066 -16.99617 -16.45879 -16.24345 -15.39866 -15.07400 -14.93204 -14.63011 -14.47073 -14.04641 -13.84045 -13.60528 -13.37620 -13.09413 -12.86340 -12.66626 -12.46659 -12.12410 -11.89356 -11.79521 -11.50512 -11.27551 -11.14717 -10.85735 -10.83651 -10.74933 -10.68888 -10.28290 -10.24263 -10.19935 -10.18000 -10.11002 -9.83288 -9.63098 -9.18276 -8.88089 -6.96559 -5.77550 -3.06146 -0.66441 0.40057 1.06348 1.56174 2.65915 2.68930 3.42499 3.47414 3.47749 3.49232 4.15127 4.32962 4.57736 4.74637 4.81091 4.93745 4.97790 5.00812 5.17791 5.44042 5.46550 5.51121 5.59048 5.63135 5.64629 5.73816 5.79601 5.81080 5.93760 5.94922 6.10372 6.16255 6.22222 6.38271 6.49153 6.55964 6.66302 6.93448 7.08333 7.10623 7.27498 7.69019 7.77056 8.41297 9.52341 10.10598 10.44884 11.45165 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.002349 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.084565 B =11918.813026 C =12258.098444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.104 3.896 4 N -0.248 5.248 5 N -0.253 5.253 6 S 0.411 5.589 7 C -0.287 4.287 8 C 0.600 3.400 9 O -0.507 6.507 10 N -0.715 5.715 11 C 0.146 3.854 12 H 0.093 0.907 13 C -0.120 4.120 14 C -0.120 4.120 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.132 4.132 27 C -0.125 4.125 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 5.298 24.224 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.043 4.043 4 N -0.114 5.114 5 N -0.234 5.234 6 S 0.547 5.453 7 C -0.428 4.428 8 C 0.383 3.617 9 O -0.383 6.383 10 N -0.366 5.366 11 C 0.043 3.957 12 H 0.111 0.889 13 C -0.159 4.159 14 C -0.159 4.159 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.173 4.173 27 C -0.164 4.164 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.624 6.042 25.047 25.898 hybrid contribution 0.371 -0.948 -1.150 1.535 sum -2.253 5.094 23.897 24.538 Atomic orbital electron populations 1.21667 0.93230 1.02872 1.02153 1.20333 0.97034 0.86315 1.05196 1.23008 0.96514 0.99758 0.85007 1.70618 1.13785 0.98968 1.27998 1.78914 1.18350 1.10601 1.15495 1.82541 1.46477 1.14515 1.01770 1.27862 1.14669 1.00078 1.00216 1.16434 0.78231 0.85213 0.81824 1.90843 1.45403 1.19241 1.82822 1.46085 1.67370 1.16294 1.06825 1.21252 0.99982 0.97153 0.77297 0.88851 1.21772 1.01917 0.96258 0.95910 1.21754 0.99814 1.00984 0.93368 1.20242 0.94833 0.92723 0.85516 0.93568 1.42422 1.06658 1.81587 1.05882 1.19232 0.87115 1.38304 0.92235 0.91237 1.24740 0.96456 1.02578 0.97241 1.69660 1.20390 1.53744 1.14352 0.86216 0.82252 0.77900 0.79984 1.21750 1.21806 1.20806 1.22235 1.02333 1.00638 0.92116 1.21918 0.96459 0.99815 0.98214 0.91116 0.92608 0.92137 0.87397 0.89417 0.76969 0.91696 0.91382 0.91856 0.91210 0.78288 0.93529 0.92379 0.91679 0.92144 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.05 -0.43 5.95 -27.88 -0.17 -0.59 16 3 C 0.10 1.07 6.25 -82.84 -0.52 0.55 16 4 N -0.25 -2.76 11.54 33.42 0.39 -2.37 16 5 N -0.25 -2.62 12.51 60.35 0.75 -1.86 16 6 S 0.41 3.03 23.05 -107.50 -2.48 0.55 16 7 C -0.29 -2.76 6.80 -35.96 -0.24 -3.00 16 8 C 0.60 6.60 7.77 -12.64 -0.10 6.50 16 9 O -0.51 -7.04 14.56 5.26 0.08 -6.97 16 10 N -0.72 -6.74 5.07 -54.97 -0.28 -7.02 16 11 C 0.15 1.69 2.46 -67.93 -0.17 1.52 16 12 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 13 C -0.12 -1.30 5.39 -26.73 -0.14 -1.45 16 14 C -0.12 -1.77 5.39 -26.73 -0.14 -1.91 16 15 C 0.18 3.25 2.77 -67.93 -0.19 3.06 16 16 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 17 N -0.73 -17.52 5.12 -53.42 -0.27 -17.80 16 18 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 19 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C -0.13 -2.25 5.50 -26.73 -0.15 -2.39 16 27 C -0.12 -1.67 5.49 -26.73 -0.15 -1.81 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.11 1.07 6.47 -51.93 -0.34 0.73 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 2.65 8.03 -40.82 -0.33 2.32 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -31.70 366.67 -8.84 -40.54 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.41 Total: 6.83 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.84 Total: -7.41 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 1.31 Total: -56.18 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.08 Total: -6.97 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.48 Total: 0.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.70 -8.84 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034687156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.355 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds