Wall clock time and date at job start Tue Mar 31 2020 14:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 H 1.09001 * 109.49893 * 54.93185 * 3 2 1 5 5 C 1.52757 * 109.56445 * 294.96157 * 3 2 1 6 6 N 1.46924 * 109.00965 * 185.55106 * 5 3 2 7 7 C 1.34777 * 120.63222 * 233.58303 * 6 5 3 8 8 O 1.21628 * 119.99744 * 5.39958 * 7 6 5 9 9 C 1.47170 * 119.99993 * 185.39815 * 7 6 5 10 10 S 1.77332 * 128.47781 * 36.81936 * 9 7 6 11 11 N 1.56635 * 95.28381 * 179.97438 * 10 9 7 12 12 N 1.27335 * 109.74203 * 359.97438 * 11 10 9 13 13 C 1.31239 * 120.03685 * 0.02562 * 12 11 10 14 14 C 1.50706 * 124.05337 * 179.97438 * 13 12 11 15 15 C 1.46928 * 118.73599 * 53.31418 * 6 5 3 16 16 C 1.53190 * 108.77128 * 306.63867 * 15 6 5 17 17 C 1.53040 * 109.31545 * 54.64035 * 16 15 6 18 18 H 1.09004 * 109.45662 * 58.63283 * 17 16 15 19 19 N 1.46499 * 109.45995 * 178.61038 * 17 16 15 20 20 C 1.36932 * 120.00078 * 274.99395 * 19 17 16 21 21 H 1.08002 * 120.00003 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00124 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00208 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99979 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47429 * 89.99721 * 24 22 20 26 26 H 1.48499 * 109.47113 * 209.99838 * 24 22 20 27 27 H 1.48509 * 109.47135 * 329.99843 * 24 22 20 28 28 H 1.08992 * 109.47578 * 300.00040 * 1 2 3 29 29 H 1.09001 * 109.47196 * 60.01033 * 1 2 3 30 30 H 1.09001 * 109.46727 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47578 * 239.99960 * 2 1 3 32 32 H 1.09008 * 109.47192 * 119.99363 * 2 1 3 33 33 H 1.09011 * 109.50817 * 65.67163 * 5 3 2 34 34 H 1.08998 * 109.43092 * 305.38974 * 5 3 2 35 35 H 1.08998 * 109.47100 * 270.02052 * 14 13 12 36 36 H 1.08995 * 109.47138 * 30.02636 * 14 13 12 37 37 H 1.08997 * 109.46678 * 150.02717 * 14 13 12 38 38 H 1.08993 * 109.59065 * 66.42912 * 15 6 5 39 39 H 1.09001 * 109.57997 * 186.85239 * 15 6 5 40 40 H 1.09008 * 109.49519 * 174.59044 * 16 15 6 41 41 H 1.08996 * 109.50094 * 294.64894 * 16 15 6 42 42 H 0.96998 * 119.99746 * 95.00626 * 19 17 16 43 43 H 0.96998 * 120.00094 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9823 0.8410 5 6 1.6377 2.1273 -1.3049 6 7 2.2450 3.4644 -1.3507 7 6 1.4855 4.5565 -1.5674 8 8 0.2752 4.4530 -1.6293 9 6 2.1206 5.8742 -1.7290 10 16 3.6496 6.2707 -2.5349 11 7 3.5646 7.8098 -2.2564 12 7 2.4972 8.0722 -1.6137 13 6 1.6705 7.1056 -1.2904 14 6 0.3849 7.3130 -0.5319 15 6 3.6951 3.5888 -1.1499 16 6 4.0734 2.8883 0.1589 17 6 3.5651 1.4451 0.1258 18 1 4.0006 0.9263 -0.7282 19 7 3.9541 0.7623 1.3622 20 6 5.1916 0.1853 1.4655 21 1 5.8812 0.2341 0.6357 22 6 5.5600 -0.4622 2.6368 23 7 6.7497 -1.0163 2.7363 24 14 4.3672 -0.5471 4.0718 25 1 3.5338 -1.7702 3.9511 26 1 5.1283 -0.5906 5.3462 27 1 3.4912 0.6520 4.0591 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5522 2.2173 -1.3493 34 1 1.9922 1.5358 -2.1490 35 1 0.5769 7.2307 0.5379 36 1 -0.0127 8.3031 -0.7546 37 1 -0.3393 6.5551 -0.8303 38 1 4.2209 3.1190 -1.9810 39 1 3.9668 4.6429 -1.0920 40 1 5.1576 2.8896 0.2720 41 1 3.6196 3.4153 0.9981 42 1 3.3349 0.7187 2.1076 43 1 7.0069 -1.4691 3.5546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037776131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:24 Heat of formation + Delta-G solvation = 47.625314 kcal Electronic energy + Delta-G solvation = -25966.489084 eV Core-core repulsion = 22367.653639 eV Total energy + Delta-G solvation = -3598.835445 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22788 -40.25289 -38.06643 -35.09124 -34.07812 -33.49835 -31.91718 -30.08525 -29.78748 -28.25222 -27.19988 -25.34556 -24.18957 -22.95184 -22.05463 -20.97882 -20.14034 -19.33100 -18.89370 -17.72488 -17.29940 -16.51560 -16.08504 -15.41027 -14.98889 -14.70582 -14.47120 -14.19916 -13.89491 -13.63417 -13.53152 -13.33339 -13.25636 -12.97133 -12.85629 -12.70540 -12.46102 -12.24794 -12.00087 -11.82445 -11.53522 -11.17371 -11.12855 -10.91332 -10.61053 -10.52379 -10.42231 -10.29262 -10.21891 -9.96346 -9.89998 -9.76968 -9.65787 -9.01230 -8.80486 -7.36651 -5.85490 -3.21677 -0.47019 0.50869 1.23117 1.72179 2.50074 2.79778 3.30911 3.33805 3.39960 3.62773 4.13862 4.35335 4.51277 4.70112 4.90145 4.95529 5.01828 5.05737 5.18778 5.29198 5.31239 5.41196 5.42525 5.45089 5.48732 5.65236 5.76463 5.82721 5.87454 5.91077 5.95400 6.10834 6.12573 6.23540 6.28539 6.41188 6.59318 6.66283 6.81119 7.08852 7.41051 7.77945 7.89206 8.33399 9.11144 9.83886 10.03130 11.32609 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.003770 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.679159 B = 7425.750607 C = 8283.940097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.110 4.110 4 H 0.071 0.929 5 C 0.122 3.878 6 N -0.595 5.595 7 C 0.603 3.397 8 O -0.522 6.522 9 C -0.290 4.290 10 S 0.434 5.566 11 N -0.265 5.265 12 N -0.250 5.250 13 C 0.094 3.906 14 C -0.080 4.080 15 C 0.098 3.902 16 C -0.151 4.151 17 C 0.189 3.811 18 H 0.060 0.940 19 N -0.744 5.744 20 C -0.246 4.246 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.932 5.932 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.361 0.639 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 11.683 -10.713 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.130 4.130 4 H 0.089 0.911 5 C 0.000 4.000 6 N -0.327 5.327 7 C 0.388 3.612 8 O -0.399 6.399 9 C -0.431 4.431 10 S 0.570 5.430 11 N -0.245 5.245 12 N -0.116 5.116 13 C -0.052 4.052 14 C -0.140 4.140 15 C -0.026 4.026 16 C -0.192 4.192 17 C 0.078 3.922 18 H 0.078 0.922 19 N -0.385 5.385 20 C -0.375 4.375 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.579 5.579 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.988 12.417 -11.563 19.689 hybrid contribution -1.651 -0.391 1.864 2.521 sum -11.639 12.026 -9.699 19.343 Atomic orbital electron populations 1.21861 0.96524 1.01312 1.01491 1.21459 0.94612 0.95401 1.03597 1.21778 0.97718 0.96515 0.97017 0.91051 1.21763 0.99694 0.80331 0.98208 1.48035 1.08717 1.06629 1.69352 1.16483 0.86035 0.81391 0.77305 1.90800 1.12767 1.84840 1.51496 1.27698 1.02919 0.99901 1.12546 1.82773 1.14137 1.04772 1.41272 1.78775 1.16223 1.12860 1.16675 1.70633 0.98785 1.30347 1.11872 1.22881 0.98625 0.85695 0.98026 1.20521 0.89849 1.04749 0.98929 1.22162 0.79237 1.00719 1.00487 1.22670 1.03019 0.98915 0.94577 1.20158 0.90649 0.90417 0.90926 0.92203 1.42765 1.16705 1.66161 1.12901 1.19036 0.90672 1.27289 1.00530 0.89134 1.24647 0.96371 1.00136 0.97625 1.69690 1.19297 1.41314 1.27614 0.86618 0.80990 0.77827 0.83462 1.20983 1.21768 1.20395 0.93014 0.92901 0.92946 0.91766 0.90362 0.88555 0.90730 0.89464 0.89560 0.88210 0.90006 0.91508 0.89608 0.92118 0.80545 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 37.16 0.36 -1.41 16 2 C -0.11 -1.53 5.31 -26.73 -0.14 -1.67 16 3 C -0.11 -1.52 1.91 -90.72 -0.17 -1.70 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 5 C 0.12 1.46 5.31 -3.94 -0.02 1.43 16 6 N -0.60 -7.19 2.98 -174.40 -0.52 -7.71 16 7 C 0.60 7.76 7.51 -12.63 -0.09 7.67 16 8 O -0.52 -7.77 14.97 5.25 0.08 -7.69 16 9 C -0.29 -3.39 5.80 -35.95 -0.21 -3.60 16 10 S 0.43 4.29 20.68 -107.50 -2.22 2.06 16 11 N -0.27 -3.27 12.51 60.35 0.75 -2.52 16 12 N -0.25 -3.21 11.54 33.42 0.39 -2.83 16 13 C 0.09 1.11 7.00 -82.84 -0.58 0.53 16 14 C -0.08 -0.75 10.21 36.01 0.37 -0.38 16 15 C 0.10 1.12 5.77 -3.71 -0.02 1.10 16 16 C -0.15 -2.22 5.66 -26.61 -0.15 -2.37 16 17 C 0.19 3.10 2.19 -67.89 -0.15 2.95 16 18 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 19 N -0.74 -15.76 4.13 -53.38 -0.22 -15.98 16 20 C -0.25 -6.36 10.41 -15.06 -0.16 -6.52 16 21 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -28.04 13.97 55.49 0.78 -27.27 16 24 Si 0.88 21.16 27.74 -169.99 -4.71 16.45 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.55 6.70 -51.93 -0.35 0.20 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.26 7.22 -51.92 -0.37 0.89 16 33 H 0.10 1.18 5.71 -51.92 -0.30 0.88 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.00 6.59 -51.93 -0.34 0.66 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.70 4.38 -36.31 -0.16 0.54 16 40 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.36 7.75 5.38 -40.82 -0.22 7.53 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -31.00 353.35 -7.40 -38.40 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.98 Total: 5.60 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.07 Total: -3.84 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 1.18 Total: -56.30 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -2.22 Total: 2.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.00 -7.40 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037776131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.026 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds