Wall clock time and date at job start Tue Mar 31 2020 14:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 H 1.09001 * 109.49893 * 54.93185 * 3 2 1 5 5 C 1.52757 * 109.56445 * 294.96157 * 3 2 1 6 6 N 1.46924 * 109.00965 * 185.55106 * 5 3 2 7 7 C 1.34777 * 120.63222 * 233.58303 * 6 5 3 8 8 O 1.21628 * 119.99744 * 5.39958 * 7 6 5 9 9 C 1.47170 * 119.99993 * 185.39815 * 7 6 5 10 10 S 1.77332 * 128.47781 * 36.81936 * 9 7 6 11 11 N 1.56635 * 95.28381 * 179.97438 * 10 9 7 12 12 N 1.27335 * 109.74203 * 359.97438 * 11 10 9 13 13 C 1.31239 * 120.03685 * 0.02562 * 12 11 10 14 14 C 1.50706 * 124.05337 * 179.97438 * 13 12 11 15 15 C 1.46928 * 118.73599 * 53.31418 * 6 5 3 16 16 C 1.53190 * 108.77128 * 306.63867 * 15 6 5 17 17 C 1.53040 * 109.31545 * 54.64035 * 16 15 6 18 18 H 1.09004 * 109.45662 * 58.63283 * 17 16 15 19 19 N 1.46499 * 109.45995 * 178.61038 * 17 16 15 20 20 C 1.36932 * 120.00078 * 274.99395 * 19 17 16 21 21 H 1.08002 * 120.00003 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00124 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00208 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99979 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47429 * 89.99721 * 24 22 20 26 26 H 1.48499 * 109.47113 * 209.99838 * 24 22 20 27 27 H 1.48509 * 109.47135 * 329.99843 * 24 22 20 28 28 H 1.08992 * 109.47578 * 300.00040 * 1 2 3 29 29 H 1.09001 * 109.47196 * 60.01033 * 1 2 3 30 30 H 1.09001 * 109.46727 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47578 * 239.99960 * 2 1 3 32 32 H 1.09008 * 109.47192 * 119.99363 * 2 1 3 33 33 H 1.09011 * 109.50817 * 65.67163 * 5 3 2 34 34 H 1.08998 * 109.43092 * 305.38974 * 5 3 2 35 35 H 1.08998 * 109.47100 * 270.02052 * 14 13 12 36 36 H 1.08995 * 109.47138 * 30.02636 * 14 13 12 37 37 H 1.08997 * 109.46678 * 150.02717 * 14 13 12 38 38 H 1.08993 * 109.59065 * 66.42912 * 15 6 5 39 39 H 1.09001 * 109.57997 * 186.85239 * 15 6 5 40 40 H 1.09008 * 109.49519 * 174.59044 * 16 15 6 41 41 H 1.08996 * 109.50094 * 294.64894 * 16 15 6 42 42 H 0.96998 * 119.99746 * 95.00626 * 19 17 16 43 43 H 0.96998 * 120.00094 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9823 0.8410 5 6 1.6377 2.1273 -1.3049 6 7 2.2450 3.4644 -1.3507 7 6 1.4855 4.5565 -1.5674 8 8 0.2752 4.4530 -1.6293 9 6 2.1206 5.8742 -1.7290 10 16 3.6496 6.2707 -2.5349 11 7 3.5646 7.8098 -2.2564 12 7 2.4972 8.0722 -1.6137 13 6 1.6705 7.1056 -1.2904 14 6 0.3849 7.3130 -0.5319 15 6 3.6951 3.5888 -1.1499 16 6 4.0734 2.8883 0.1589 17 6 3.5651 1.4451 0.1258 18 1 4.0006 0.9263 -0.7282 19 7 3.9541 0.7623 1.3622 20 6 5.1916 0.1853 1.4655 21 1 5.8812 0.2341 0.6357 22 6 5.5600 -0.4622 2.6368 23 7 6.7497 -1.0163 2.7363 24 14 4.3672 -0.5471 4.0718 25 1 3.5338 -1.7702 3.9511 26 1 5.1283 -0.5906 5.3462 27 1 3.4912 0.6520 4.0591 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5522 2.2173 -1.3493 34 1 1.9922 1.5358 -2.1490 35 1 0.5769 7.2307 0.5379 36 1 -0.0127 8.3031 -0.7546 37 1 -0.3393 6.5551 -0.8303 38 1 4.2209 3.1190 -1.9810 39 1 3.9668 4.6429 -1.0920 40 1 5.1576 2.8896 0.2720 41 1 3.6196 3.4153 0.9981 42 1 3.3349 0.7187 2.1076 43 1 7.0069 -1.4691 3.5546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037776131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:24 Heat of formation + Delta-G solvation = 27.539901 kcal Electronic energy + Delta-G solvation = -25967.360052 eV Core-core repulsion = 22367.653639 eV Total energy + Delta-G solvation = -3599.706414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13294 -41.28486 -39.24334 -36.39589 -35.43217 -34.37288 -33.63632 -31.62291 -30.73801 -29.25170 -28.07020 -26.67567 -25.28531 -24.42240 -23.13020 -22.22027 -21.33382 -20.43020 -19.75273 -19.46370 -18.35366 -17.50935 -17.02770 -16.81134 -16.25132 -16.02233 -15.69467 -15.32656 -15.12316 -14.75723 -14.61021 -14.60157 -14.25170 -14.04520 -13.97182 -13.88226 -13.51546 -13.44015 -13.15575 -12.92767 -12.75166 -12.63000 -12.54612 -12.22101 -12.13158 -11.83207 -11.63710 -11.53073 -11.45229 -11.16892 -11.12243 -10.97342 -10.82921 -10.62395 -9.84287 -9.25862 -7.98655 -5.30271 -1.35678 -0.33827 0.37186 0.82581 1.38944 1.40114 1.47202 1.52195 1.83663 2.50269 2.77505 3.20248 3.33214 3.50462 3.54008 3.67936 3.87057 3.95782 4.11845 4.21152 4.25715 4.40093 4.43169 4.59125 4.61747 4.66105 4.71941 4.72586 4.78294 4.82486 4.99852 5.00974 5.11730 5.15141 5.27110 5.31760 5.42971 5.48781 5.61752 5.82534 6.09698 6.25684 6.53906 6.79517 7.12068 7.89097 8.06364 9.22849 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.003770 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.679159 B = 7425.750607 C = 8283.940097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.099 4.099 4 H 0.063 0.937 5 C 0.126 3.874 6 N -0.594 5.594 7 C 0.608 3.392 8 O -0.543 6.543 9 C -0.312 4.312 10 S 0.502 5.498 11 N -0.292 5.292 12 N -0.272 5.272 13 C 0.092 3.908 14 C -0.079 4.079 15 C 0.105 3.895 16 C -0.144 4.144 17 C 0.182 3.818 18 H 0.058 0.942 19 N -0.747 5.747 20 C -0.217 4.217 21 H 0.065 0.935 22 C -0.060 4.060 23 N -0.984 5.984 24 Si 0.943 3.057 25 H -0.280 1.280 26 H -0.302 1.302 27 H -0.257 1.257 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.362 0.638 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.887 12.617 -11.785 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.119 4.119 4 H 0.081 0.919 5 C 0.005 3.995 6 N -0.326 5.326 7 C 0.393 3.607 8 O -0.422 6.422 9 C -0.453 4.453 10 S 0.638 5.362 11 N -0.272 5.272 12 N -0.137 5.137 13 C -0.055 4.055 14 C -0.139 4.139 15 C -0.019 4.019 16 C -0.185 4.185 17 C 0.073 3.927 18 H 0.076 0.924 19 N -0.389 5.389 20 C -0.348 4.348 21 H 0.083 0.917 22 C -0.251 4.251 23 N -0.635 5.635 24 Si 0.772 3.228 25 H -0.206 1.206 26 H -0.230 1.230 27 H -0.182 1.182 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.195 0.805 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.709 13.399 -12.674 21.846 hybrid contribution -1.082 -0.668 2.065 2.426 sum -12.791 12.731 -10.609 20.934 Atomic orbital electron populations 1.21806 0.94648 1.02045 1.02080 1.21417 0.96249 0.94809 1.02479 1.21640 0.95243 0.96997 0.98015 0.91881 1.21753 0.99995 0.80267 0.97522 1.48041 1.08800 1.06611 1.69120 1.16531 0.85731 0.81668 0.76769 1.90790 1.13702 1.85203 1.52480 1.27692 1.04309 0.99471 1.13789 1.82458 1.12006 1.02728 1.38969 1.78577 1.16581 1.14756 1.17263 1.70684 0.99209 1.31055 1.12757 1.23214 0.99021 0.85562 0.97746 1.20587 0.88812 1.05338 0.99198 1.22141 0.79158 1.01259 0.99328 1.22469 1.01829 0.97789 0.96370 1.20421 0.92759 0.90798 0.88679 0.92416 1.42793 1.15030 1.66392 1.14652 1.19020 0.91535 1.25147 0.99058 0.91703 1.25336 0.98007 1.01198 1.00600 1.69856 1.21689 1.43726 1.28228 0.85592 0.79018 0.78605 0.79632 1.20605 1.22964 1.18196 0.93259 0.91449 0.92206 0.91202 0.93163 0.88196 0.88765 0.88513 0.88148 0.88878 0.87572 0.90330 0.91162 0.92981 0.80494 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.67 71.98 0.70 -2.35 16 2 C -0.11 -2.82 5.31 30.59 0.16 -2.66 16 3 C -0.10 -2.54 1.91 -10.86 -0.02 -2.56 16 4 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.13 2.65 5.31 86.22 0.46 3.11 16 6 N -0.59 -12.71 2.98 -823.91 -2.45 -15.17 16 7 C 0.61 14.18 7.51 86.59 0.65 14.83 16 8 O -0.54 -15.04 14.97 -4.12 -0.06 -15.10 16 9 C -0.31 -6.61 5.80 24.62 0.14 -6.47 16 10 S 0.50 8.66 20.68 -56.49 -1.17 7.49 16 11 N -0.29 -6.69 12.51 37.02 0.46 -6.22 16 12 N -0.27 -6.58 11.54 -48.18 -0.56 -7.14 16 13 C 0.09 2.01 7.00 42.65 0.30 2.31 16 14 C -0.08 -1.36 10.21 71.24 0.73 -0.63 16 15 C 0.10 2.10 5.77 86.36 0.50 2.60 16 16 C -0.14 -4.02 5.66 30.67 0.17 -3.84 16 17 C 0.18 5.73 2.19 45.02 0.10 5.83 16 18 H 0.06 1.87 8.08 -2.38 -0.02 1.85 16 19 N -0.75 -31.17 4.13 -322.81 -1.33 -32.50 16 20 C -0.22 -11.31 10.41 84.03 0.87 -10.44 16 21 H 0.07 3.68 8.06 -2.91 -0.02 3.66 16 22 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 23 N -0.98 -60.88 13.97 21.65 0.30 -60.58 16 24 Si 0.94 44.06 27.74 68.60 1.90 45.97 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 27 H -0.26 -10.95 6.52 99.48 0.65 -10.30 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.20 6.70 -2.39 -0.02 1.18 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.56 7.22 -2.38 -0.02 1.55 16 33 H 0.10 2.13 5.71 -2.38 -0.01 2.11 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.74 6.59 -2.39 -0.02 1.73 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.41 4.38 -12.32 -0.05 1.36 16 40 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.36 15.09 5.38 -92.71 -0.50 14.59 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -67.66 353.35 2.76 -64.90 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.44 Total: 21.54 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.23 Total: -3.19 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -3.58 Total: -121.60 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.06 Total: -15.10 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.97 kcal Atomic # 16 Polarization: 8.66 SS G_CDS: -1.17 Total: 7.49 kcal Total: -67.66 2.76 -64.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037776131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.435 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds