Wall clock time and date at job start Tue Mar 31 2020 14:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 H 1.09000 * 109.49703 * 304.93523 * 3 2 1 5 5 C 1.53191 * 109.49671 * 64.99924 * 3 2 1 6 6 N 1.46927 * 108.77310 * 174.61430 * 5 3 2 7 7 C 1.34772 * 120.62918 * 126.36697 * 6 5 3 8 8 O 1.21629 * 120.00170 * 4.19302 * 7 6 5 9 9 C 1.47174 * 120.00329 * 184.18617 * 7 6 5 10 10 S 1.77330 * 128.47673 * 314.58459 * 9 7 6 11 11 N 1.56632 * 95.28569 * 180.25728 * 10 9 7 12 12 N 1.27338 * 109.73922 * 359.97438 * 11 10 9 13 13 C 1.31235 * 120.03880 * 359.97438 * 12 11 10 14 14 C 1.50697 * 124.05736 * 179.97438 * 13 12 11 15 15 C 1.46929 * 118.74015 * 306.64504 * 6 5 3 16 16 C 1.52762 * 109.00837 * 53.31144 * 15 6 5 17 17 C 1.53042 * 109.38345 * 305.58562 * 16 15 6 18 18 H 1.08992 * 109.46158 * 181.26089 * 17 16 15 19 19 N 1.46500 * 109.44648 * 301.23238 * 17 16 15 20 20 C 1.36933 * 119.99633 * 275.05446 * 19 17 16 21 21 H 1.08002 * 119.99986 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00231 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99934 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00157 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47020 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46958 * 120.00135 * 24 22 20 27 27 H 1.48497 * 109.47476 * 240.00228 * 24 22 20 28 28 H 1.08999 * 109.46796 * 300.00012 * 1 2 3 29 29 H 1.09003 * 109.47232 * 60.00228 * 1 2 3 30 30 H 1.09001 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46796 * 239.99988 * 2 1 3 32 32 H 1.08995 * 109.46822 * 120.00242 * 2 1 3 33 33 H 1.09001 * 109.58513 * 54.83546 * 5 3 2 34 34 H 1.08995 * 109.58766 * 294.40131 * 5 3 2 35 35 H 1.08996 * 109.47247 * 270.02668 * 14 13 12 36 36 H 1.08997 * 109.46952 * 30.02313 * 14 13 12 37 37 H 1.09002 * 109.47601 * 150.02490 * 14 13 12 38 38 H 1.09005 * 109.58400 * 173.14091 * 15 6 5 39 39 H 1.08995 * 109.58555 * 293.56685 * 15 6 5 40 40 H 1.08993 * 109.56394 * 185.55195 * 16 15 6 41 41 H 1.08997 * 109.35990 * 65.49633 * 16 15 6 42 42 H 0.96994 * 120.00453 * 95.06382 * 19 17 16 43 43 H 0.96997 * 120.00402 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2409 3.4659 1.3490 7 6 1.4804 4.5579 1.5624 8 8 0.2938 4.4357 1.7998 9 6 2.0858 5.8983 1.5086 10 16 3.6046 6.4531 2.2366 11 7 3.4826 7.9266 1.7198 12 7 2.4097 8.0588 1.0467 13 6 1.6071 7.0337 0.8818 14 6 0.3172 7.0883 0.1046 15 6 3.6907 3.5913 1.1459 16 6 4.0734 2.8889 -0.1555 17 6 3.5656 1.4456 -0.1221 18 1 3.8574 0.9366 -1.0407 19 7 4.1486 0.7500 1.0278 20 6 5.3869 0.1747 0.9242 21 1 5.9339 0.2342 -0.0052 22 6 5.9392 -0.4849 2.0136 23 7 5.2724 -0.5579 3.1460 24 14 7.6282 -1.2703 1.8719 25 1 8.1636 -1.0495 0.5046 26 1 8.5443 -0.6569 2.8668 27 1 7.5196 -2.7283 2.1320 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9913 1.5400 2.1546 34 1 0.5496 2.2169 1.3540 35 1 -0.4991 7.3598 0.7739 36 1 0.4011 7.8332 -0.6867 37 1 0.1165 6.1116 -0.3357 38 1 3.9611 4.6455 1.0838 39 1 4.2179 3.1251 1.9782 40 1 5.1577 2.8906 -0.2660 41 1 3.6208 3.4145 -0.9964 42 1 3.6575 0.6967 1.8625 43 1 5.6581 -1.0191 3.9071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037776136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:33 Heat of formation + Delta-G solvation = 45.491902 kcal Electronic energy + Delta-G solvation = -26314.931034 eV Core-core repulsion = 22716.003077 eV Total energy + Delta-G solvation = -3598.927957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07603 -40.08819 -37.95061 -34.67197 -33.88307 -33.39897 -31.83371 -29.73171 -29.28710 -28.04318 -27.08838 -25.17818 -24.00404 -23.60822 -22.22289 -20.92824 -19.69706 -18.75781 -18.44735 -17.48619 -17.11100 -16.36688 -15.89301 -15.19868 -14.77751 -14.65698 -14.33761 -14.10081 -13.89414 -13.48347 -13.38943 -13.23417 -13.20101 -12.91081 -12.67350 -12.56355 -12.41400 -11.95314 -11.70584 -11.54150 -11.20561 -11.15414 -10.91079 -10.88422 -10.49511 -10.37245 -10.29642 -10.21440 -10.08077 -9.90930 -9.80626 -9.64862 -9.59227 -9.00530 -8.47216 -7.06866 -5.86845 -3.15881 -0.28732 0.65318 1.38627 1.87462 2.68169 3.02047 3.36427 3.43125 3.45007 3.75495 4.34190 4.50010 4.51130 4.92490 5.09123 5.14867 5.19731 5.32504 5.37500 5.38615 5.45983 5.50568 5.59832 5.66890 5.68950 5.80193 5.84781 5.94050 6.01199 6.04284 6.20973 6.24811 6.32104 6.43426 6.47640 6.58101 6.64036 6.80582 6.87703 7.35962 7.54827 7.62445 8.00161 8.31317 9.43546 9.98380 10.33528 11.35394 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.004366 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.888702 B = 6412.352749 C = 7859.872511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.120 3.880 6 N -0.587 5.587 7 C 0.598 3.402 8 O -0.525 6.525 9 C -0.283 4.283 10 S 0.440 5.560 11 N -0.272 5.272 12 N -0.251 5.251 13 C 0.085 3.915 14 C -0.069 4.069 15 C 0.107 3.893 16 C -0.149 4.149 17 C 0.178 3.822 18 H 0.054 0.946 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.009 4.009 23 N -0.931 5.931 24 Si 0.903 3.097 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 10.362 -5.524 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.318 5.318 7 C 0.382 3.618 8 O -0.403 6.403 9 C -0.423 4.423 10 S 0.577 5.423 11 N -0.252 5.252 12 N -0.117 5.117 13 C -0.061 4.061 14 C -0.129 4.129 15 C -0.017 4.017 16 C -0.191 4.191 17 C 0.068 3.932 18 H 0.072 0.928 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.579 5.579 24 Si 0.734 3.266 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.857 11.264 -4.811 14.037 hybrid contribution -0.104 -0.929 -0.242 0.965 sum -6.961 10.335 -5.053 13.446 Atomic orbital electron populations 1.21863 0.96729 1.01179 1.01358 1.21415 0.94330 0.95471 1.03559 1.21776 0.97469 0.96356 0.96789 0.91378 1.21829 0.98926 0.80459 0.98907 1.48022 1.08826 1.06390 1.68609 1.16513 0.85739 0.81565 0.77999 1.90813 1.14613 1.85602 1.49282 1.27766 1.02776 1.01127 1.10679 1.82960 1.14708 1.03644 1.40979 1.78725 1.15796 1.16054 1.14638 1.70599 0.99154 1.27831 1.14111 1.22810 0.98907 0.85863 0.98543 1.20347 0.89458 1.04233 0.98854 1.21934 0.79031 0.99379 1.01313 1.22468 1.02217 0.99430 0.94955 1.20226 0.89686 0.90423 0.92884 0.92769 1.42483 1.19067 1.64064 1.10485 1.19249 0.93470 1.27193 0.97159 0.91154 1.24694 0.98514 1.01320 0.95999 1.69647 1.38002 1.47968 1.02286 0.86186 0.84241 0.78958 0.77173 1.20629 1.21941 1.21940 0.92760 0.93332 0.93067 0.91866 0.90363 0.90027 0.89113 0.89157 0.89765 0.89661 0.92449 0.88511 0.90282 0.93193 0.78085 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 37.16 0.36 -1.53 16 2 C -0.11 -1.59 5.19 -26.73 -0.14 -1.73 16 3 C -0.10 -1.52 2.14 -90.50 -0.19 -1.72 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 5 C 0.12 1.83 5.02 -3.71 -0.02 1.81 16 6 N -0.59 -8.76 2.98 -174.39 -0.52 -9.28 16 7 C 0.60 9.04 7.25 -12.63 -0.09 8.95 16 8 O -0.53 -9.00 16.30 5.25 0.09 -8.91 16 9 C -0.28 -3.83 5.76 -35.95 -0.21 -4.04 16 10 S 0.44 5.37 20.81 -107.50 -2.24 3.13 16 11 N -0.27 -3.76 12.51 60.35 0.75 -3.00 16 12 N -0.25 -3.50 11.54 33.42 0.39 -3.11 16 13 C 0.09 1.10 7.00 -82.85 -0.58 0.52 16 14 C -0.07 -0.68 10.02 36.00 0.36 -0.32 16 15 C 0.11 1.58 5.77 -3.93 -0.02 1.55 16 16 C -0.15 -2.27 5.76 -26.83 -0.15 -2.43 16 17 C 0.18 3.04 2.53 -67.88 -0.17 2.86 16 18 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 19 N -0.72 -15.32 3.73 -53.38 -0.20 -15.51 16 20 C -0.24 -5.91 9.93 -15.06 -0.15 -6.06 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.93 -25.88 13.06 55.49 0.72 -25.15 16 24 Si 0.90 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.05 0.66 6.70 -51.93 -0.35 0.32 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 33 H 0.08 1.38 6.64 -51.93 -0.34 1.04 16 34 H 0.09 1.35 5.74 -51.93 -0.30 1.06 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 38 H 0.06 0.75 4.10 -34.38 -0.14 0.61 16 39 H 0.10 1.65 7.74 -51.93 -0.40 1.25 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.38 8.78 5.94 -40.82 -0.24 8.54 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -28.53 355.16 -7.71 -36.24 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.93 Total: 6.72 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.10 Total: -2.47 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 1.15 Total: -56.06 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -2.24 Total: 3.13 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.53 -7.71 -36.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037776136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.737 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds