Wall clock time and date at job start Tue Mar 31 2020 14:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 H 1.09000 * 109.49703 * 304.93523 * 3 2 1 5 5 C 1.53191 * 109.49671 * 64.99924 * 3 2 1 6 6 N 1.46927 * 108.77310 * 174.61430 * 5 3 2 7 7 C 1.34772 * 120.62918 * 126.36697 * 6 5 3 8 8 O 1.21629 * 120.00170 * 4.19302 * 7 6 5 9 9 C 1.47174 * 120.00329 * 184.18617 * 7 6 5 10 10 S 1.77330 * 128.47673 * 314.58459 * 9 7 6 11 11 N 1.56632 * 95.28569 * 180.25728 * 10 9 7 12 12 N 1.27338 * 109.73922 * 359.97438 * 11 10 9 13 13 C 1.31235 * 120.03880 * 359.97438 * 12 11 10 14 14 C 1.50697 * 124.05736 * 179.97438 * 13 12 11 15 15 C 1.46929 * 118.74015 * 306.64504 * 6 5 3 16 16 C 1.52762 * 109.00837 * 53.31144 * 15 6 5 17 17 C 1.53042 * 109.38345 * 305.58562 * 16 15 6 18 18 H 1.08992 * 109.46158 * 181.26089 * 17 16 15 19 19 N 1.46500 * 109.44648 * 301.23238 * 17 16 15 20 20 C 1.36933 * 119.99633 * 275.05446 * 19 17 16 21 21 H 1.08002 * 119.99986 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00231 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99934 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00157 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47020 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46958 * 120.00135 * 24 22 20 27 27 H 1.48497 * 109.47476 * 240.00228 * 24 22 20 28 28 H 1.08999 * 109.46796 * 300.00012 * 1 2 3 29 29 H 1.09003 * 109.47232 * 60.00228 * 1 2 3 30 30 H 1.09001 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46796 * 239.99988 * 2 1 3 32 32 H 1.08995 * 109.46822 * 120.00242 * 2 1 3 33 33 H 1.09001 * 109.58513 * 54.83546 * 5 3 2 34 34 H 1.08995 * 109.58766 * 294.40131 * 5 3 2 35 35 H 1.08996 * 109.47247 * 270.02668 * 14 13 12 36 36 H 1.08997 * 109.46952 * 30.02313 * 14 13 12 37 37 H 1.09002 * 109.47601 * 150.02490 * 14 13 12 38 38 H 1.09005 * 109.58400 * 173.14091 * 15 6 5 39 39 H 1.08995 * 109.58555 * 293.56685 * 15 6 5 40 40 H 1.08993 * 109.56394 * 185.55195 * 16 15 6 41 41 H 1.08997 * 109.35990 * 65.49633 * 16 15 6 42 42 H 0.96994 * 120.00453 * 95.06382 * 19 17 16 43 43 H 0.96997 * 120.00402 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2409 3.4659 1.3490 7 6 1.4804 4.5579 1.5624 8 8 0.2938 4.4357 1.7998 9 6 2.0858 5.8983 1.5086 10 16 3.6046 6.4531 2.2366 11 7 3.4826 7.9266 1.7198 12 7 2.4097 8.0588 1.0467 13 6 1.6071 7.0337 0.8818 14 6 0.3172 7.0883 0.1046 15 6 3.6907 3.5913 1.1459 16 6 4.0734 2.8889 -0.1555 17 6 3.5656 1.4456 -0.1221 18 1 3.8574 0.9366 -1.0407 19 7 4.1486 0.7500 1.0278 20 6 5.3869 0.1747 0.9242 21 1 5.9339 0.2342 -0.0052 22 6 5.9392 -0.4849 2.0136 23 7 5.2724 -0.5579 3.1460 24 14 7.6282 -1.2703 1.8719 25 1 8.1636 -1.0495 0.5046 26 1 8.5443 -0.6569 2.8668 27 1 7.5196 -2.7283 2.1320 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.9913 1.5400 2.1546 34 1 0.5496 2.2169 1.3540 35 1 -0.4991 7.3598 0.7739 36 1 0.4011 7.8332 -0.6867 37 1 0.1165 6.1116 -0.3357 38 1 3.9611 4.6455 1.0838 39 1 4.2179 3.1251 1.9782 40 1 5.1577 2.8906 -0.2660 41 1 3.6208 3.4145 -0.9964 42 1 3.6575 0.6967 1.8625 43 1 5.6581 -1.0191 3.9071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037776136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:32 Heat of formation + Delta-G solvation = 28.613549 kcal Electronic energy + Delta-G solvation = -26315.662934 eV Core-core repulsion = 22716.003077 eV Total energy + Delta-G solvation = -3599.659857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13534 -41.30674 -39.25365 -36.01656 -35.38450 -34.38643 -33.44186 -31.10286 -30.59434 -29.19090 -28.07147 -26.50700 -25.42208 -25.15469 -23.33591 -22.16101 -20.86740 -19.80321 -19.75679 -19.21067 -18.36874 -17.53333 -16.98829 -16.66414 -16.12474 -16.06449 -15.64976 -15.49970 -15.13370 -14.81333 -14.64724 -14.45380 -14.11835 -14.01707 -13.86327 -13.67528 -13.57226 -13.16336 -12.95736 -12.87098 -12.65055 -12.61992 -12.41041 -12.29425 -12.03607 -11.83807 -11.61334 -11.44704 -11.40518 -11.20391 -11.12944 -10.91630 -10.81860 -10.58683 -9.75376 -8.90004 -7.86345 -5.11986 -1.33715 -0.36712 0.35844 0.84914 1.50482 1.52299 1.53427 1.60405 1.82318 2.61941 2.77425 3.21329 3.47664 3.52178 3.74156 3.85538 3.94229 4.04769 4.17398 4.22543 4.31290 4.45147 4.48853 4.55562 4.64445 4.69077 4.71894 4.78598 4.84838 5.01614 5.02372 5.10351 5.16816 5.20841 5.24530 5.27673 5.42031 5.51363 5.62215 5.66635 6.15557 6.35829 6.52498 6.79831 7.44304 8.19445 8.43050 9.36852 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.004366 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.888702 B = 6412.352749 C = 7859.872511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.090 0.910 5 C 0.126 3.874 6 N -0.587 5.587 7 C 0.604 3.396 8 O -0.546 6.546 9 C -0.305 4.305 10 S 0.478 5.522 11 N -0.287 5.287 12 N -0.265 5.265 13 C 0.093 3.907 14 C -0.070 4.070 15 C 0.113 3.887 16 C -0.143 4.143 17 C 0.172 3.828 18 H 0.052 0.948 19 N -0.724 5.724 20 C -0.223 4.223 21 H 0.075 0.925 22 C -0.068 4.068 23 N -0.966 5.966 24 Si 0.957 3.043 25 H -0.268 1.268 26 H -0.300 1.300 27 H -0.302 1.302 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.375 0.625 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 11.585 -7.271 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.108 0.892 5 C 0.004 3.996 6 N -0.318 5.318 7 C 0.389 3.611 8 O -0.425 6.425 9 C -0.446 4.446 10 S 0.614 5.386 11 N -0.267 5.267 12 N -0.131 5.131 13 C -0.054 4.054 14 C -0.130 4.130 15 C -0.010 4.010 16 C -0.184 4.184 17 C 0.064 3.936 18 H 0.070 0.930 19 N -0.365 5.365 20 C -0.356 4.356 21 H 0.093 0.907 22 C -0.261 4.261 23 N -0.618 5.618 24 Si 0.789 3.211 25 H -0.192 1.192 26 H -0.227 1.227 27 H -0.230 1.230 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.209 0.791 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.393 12.517 -6.613 15.971 hybrid contribution 0.032 -1.258 0.259 1.285 sum -7.362 11.259 -6.354 14.877 Atomic orbital electron populations 1.21799 0.94652 1.01942 1.02050 1.21336 0.96125 0.94958 1.01912 1.21690 0.95678 0.96672 0.97192 0.89185 1.21711 0.99133 0.80463 0.98312 1.48004 1.08799 1.06359 1.68633 1.16586 0.85400 0.81916 0.77195 1.90800 1.15542 1.86019 1.50153 1.27659 1.03947 1.00693 1.12267 1.82832 1.13524 1.02515 1.39689 1.78623 1.16120 1.17037 1.14873 1.70651 0.99419 1.28347 1.14681 1.23235 0.99283 0.85139 0.97781 1.20496 0.88248 1.04953 0.99272 1.21817 0.78781 1.00262 1.00172 1.22350 1.01895 0.98103 0.96021 1.20446 0.91199 0.90994 0.90998 0.93039 1.42585 1.18184 1.64279 1.11430 1.19574 0.94196 1.25101 0.96695 0.90673 1.25293 1.01402 1.03180 0.96176 1.69783 1.39339 1.49808 1.02840 0.85304 0.81134 0.77373 0.77327 1.19247 1.22737 1.22992 0.92928 0.91673 0.92376 0.91894 0.93569 0.92367 0.88514 0.88290 0.87826 0.89585 0.90546 0.91024 0.90970 0.90645 0.79140 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.67 71.98 0.70 -2.65 16 2 C -0.11 -2.97 5.19 30.60 0.16 -2.81 16 3 C -0.09 -2.58 2.14 -10.71 -0.02 -2.61 16 4 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 5 C 0.13 3.73 5.02 86.36 0.43 4.16 16 6 N -0.59 -16.84 2.98 -823.90 -2.45 -19.29 16 7 C 0.60 17.36 7.25 86.59 0.63 17.99 16 8 O -0.55 -17.94 16.30 -4.12 -0.07 -18.01 16 9 C -0.31 -7.73 5.76 24.62 0.14 -7.59 16 10 S 0.48 10.90 20.81 -56.49 -1.18 9.73 16 11 N -0.29 -7.43 12.51 37.02 0.46 -6.97 16 12 N -0.27 -6.90 11.54 -48.19 -0.56 -7.45 16 13 C 0.09 2.19 7.00 42.65 0.30 2.49 16 14 C -0.07 -1.22 10.02 71.24 0.71 -0.50 16 15 C 0.11 3.21 5.77 86.22 0.50 3.71 16 16 C -0.14 -4.08 5.76 30.53 0.18 -3.91 16 17 C 0.17 5.67 2.53 45.02 0.11 5.79 16 18 H 0.05 1.74 8.08 -2.39 -0.02 1.73 16 19 N -0.72 -30.98 3.73 -322.80 -1.20 -32.19 16 20 C -0.22 -11.00 9.93 84.03 0.83 -10.16 16 21 H 0.08 3.58 7.83 -2.91 -0.02 3.56 16 22 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 23 N -0.97 -55.13 13.06 21.65 0.28 -54.84 16 24 Si 0.96 43.62 29.55 68.60 2.03 45.65 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 28 H 0.05 1.21 6.70 -2.39 -0.02 1.20 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.60 7.70 -2.39 -0.02 1.59 16 33 H 0.06 2.02 6.64 -2.39 -0.02 2.01 16 34 H 0.10 2.78 5.74 -2.39 -0.01 2.77 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.51 7.91 -2.39 -0.02 1.49 16 38 H 0.08 1.87 4.10 -13.54 -0.06 1.81 16 39 H 0.07 2.44 7.74 -2.39 -0.02 2.42 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.37 17.59 5.94 -92.71 -0.55 17.04 16 43 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -60.77 355.16 2.90 -57.87 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.44 Total: 24.73 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.14 Total: 0.78 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -3.47 Total: -120.74 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.07 Total: -18.01 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 10.90 SS G_CDS: -1.18 Total: 9.73 kcal Total: -60.77 2.90 -57.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037776136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.481 kcal (2) G-P(sol) polarization free energy of solvation -60.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds