Wall clock time and date at job start Tue Mar 31 2020 13:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46937 * 2 1 4 4 C 1.50696 * 109.47443 * 240.00180 * 2 1 3 5 5 N 1.31239 * 124.05533 * 59.69645 * 4 2 1 6 6 N 1.27332 * 120.03684 * 179.73136 * 5 4 2 7 7 S 1.56634 * 109.74288 * 0.52748 * 6 5 4 8 8 C 1.38243 * 124.05554 * 240.00373 * 4 2 1 9 9 C 1.47170 * 128.47651 * 359.97348 * 8 4 2 10 10 O 1.21626 * 119.99887 * 351.91627 * 9 8 4 11 11 N 1.34773 * 120.00105 * 171.91322 * 9 8 4 12 12 C 1.46507 * 119.99960 * 1.61712 * 11 9 8 13 13 C 1.46503 * 120.00295 * 181.61637 * 11 9 8 14 14 C 1.52993 * 109.47227 * 84.68543 * 13 11 9 15 15 H 1.09005 * 112.96797 * 293.97462 * 14 13 11 16 16 C 1.53946 * 113.77130 * 65.65358 * 14 13 11 17 17 C 1.53943 * 86.29469 * 137.90697 * 16 14 13 18 18 N 1.47584 * 113.76919 * 162.29510 * 14 13 11 19 19 C 1.36937 * 134.49171 * 41.07218 * 18 14 13 20 20 H 1.07994 * 119.99972 * 4.90102 * 19 18 14 21 21 C 1.38811 * 119.99491 * 184.90164 * 19 18 14 22 22 N 1.31619 * 120.00584 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99433 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47426 * 60.00072 * 23 21 19 25 25 H 1.48501 * 109.46875 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47343 * 299.99908 * 23 21 19 27 27 H 1.09002 * 109.47496 * 299.99998 * 1 2 3 28 28 H 1.09007 * 109.47412 * 60.00211 * 1 2 3 29 29 H 1.09004 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46796 * 119.99834 * 2 1 3 31 31 H 1.09004 * 109.46844 * 60.00224 * 3 2 1 32 32 H 1.08995 * 109.47211 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47668 * 299.99887 * 3 2 1 34 34 H 1.08993 * 109.47166 * 83.69318 * 12 11 9 35 35 H 1.09006 * 109.46671 * 203.69099 * 12 11 9 36 36 H 1.08997 * 109.46911 * 323.69163 * 12 11 9 37 37 H 1.08994 * 109.47404 * 204.69079 * 13 11 9 38 38 H 1.09006 * 109.46634 * 324.69035 * 13 11 9 39 39 H 1.09004 * 113.74386 * 252.25859 * 16 14 13 40 40 H 1.09006 * 113.74024 * 23.45175 * 16 14 13 41 41 H 1.08996 * 113.76422 * 90.69613 * 17 16 14 42 42 H 1.08997 * 113.76935 * 221.98439 * 17 16 14 43 43 H 0.96999 * 120.00090 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 7 1.7601 -0.3352 -2.4582 6 7 2.2303 -0.9901 -3.4438 7 16 3.0825 -2.1954 -2.9200 8 6 2.8303 -1.8389 -1.2013 9 6 3.3452 -2.5663 -0.0301 10 8 3.1999 -2.1035 1.0853 11 7 3.9775 -3.7451 -0.1934 12 6 4.1838 -4.2854 -1.5395 13 6 4.4588 -4.4864 0.9750 14 6 3.3205 -5.3353 1.5447 15 1 2.5076 -4.7363 1.9553 16 6 2.8496 -6.4561 0.6003 17 6 2.7949 -7.3509 1.8518 18 7 3.7754 -6.4152 2.4419 19 6 4.7244 -6.5107 3.4244 20 1 5.2763 -5.6339 3.7291 21 6 4.9768 -7.7346 4.0288 22 7 4.3038 -8.8031 3.6579 23 14 6.2719 -7.8650 5.3687 24 1 5.9055 -6.9752 6.4997 25 1 6.3483 -9.2683 5.8483 26 1 7.5911 -7.4551 4.8237 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 5.0781 -3.8411 -1.9763 35 1 4.3064 -5.3670 -1.4820 36 1 3.3203 -4.0502 -2.1616 37 1 5.2831 -5.1353 0.6794 38 1 4.8033 -3.7841 1.7341 39 1 1.8742 -6.2703 0.1507 40 1 3.6015 -6.7617 -0.1273 41 1 1.8276 -7.3452 2.3540 42 1 3.1846 -8.3560 1.6906 43 1 4.4805 -9.6584 4.0800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085889445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:07 Heat of formation + Delta-G solvation = 96.512774 kcal Electronic energy + Delta-G solvation = -25685.407383 eV Core-core repulsion = 22088.691857 eV Total energy + Delta-G solvation = -3596.715526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20531 -39.86095 -37.86506 -35.80216 -35.38060 -32.23256 -31.48709 -28.97334 -27.93485 -27.70420 -27.28233 -26.28206 -23.80790 -23.33998 -22.35891 -21.44633 -19.54336 -19.06595 -18.26795 -17.27025 -16.72753 -16.28671 -16.11191 -15.42721 -15.27410 -14.78813 -14.46551 -14.25984 -13.86280 -13.67312 -13.50890 -13.31596 -13.16269 -12.74542 -12.56878 -12.35669 -12.30081 -12.21727 -11.48793 -11.40967 -11.37146 -11.14037 -11.09255 -10.93723 -10.74032 -10.53158 -10.21668 -9.96283 -9.90776 -9.88552 -9.82385 -9.77897 -9.61949 -8.79794 -8.57755 -6.89933 -5.77447 -3.11373 -0.40986 0.61850 1.33790 1.81482 2.75537 2.92436 3.38597 3.43543 3.44082 3.71949 4.22177 4.36135 4.44748 4.73993 4.86365 4.98780 5.00194 5.05947 5.15655 5.34381 5.45821 5.51214 5.52703 5.54582 5.70351 5.70538 5.74906 5.84889 5.91107 6.08561 6.08942 6.14107 6.23805 6.31189 6.44832 6.63945 6.72120 7.18616 7.24493 7.40574 7.53809 7.56952 7.96074 7.98387 9.02880 9.69748 10.58320 11.38490 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003197 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.307899 B = 8755.436584 C = 9337.919259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.140 4.140 4 C 0.104 3.896 5 N -0.245 5.245 6 N -0.282 5.282 7 S 0.423 5.577 8 C -0.286 4.286 9 C 0.595 3.405 10 O -0.510 6.510 11 N -0.594 5.594 12 C 0.064 3.936 13 C 0.120 3.880 14 C 0.129 3.871 15 H 0.049 0.951 16 C -0.160 4.160 17 C 0.156 3.844 18 N -0.600 5.600 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 13.361 -14.432 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.043 4.043 5 N -0.111 5.111 6 N -0.261 5.261 7 S 0.561 5.439 8 C -0.426 4.426 9 C 0.380 3.620 10 O -0.387 6.387 11 N -0.326 5.326 12 C -0.081 4.081 13 C -0.003 4.003 14 C 0.021 3.979 15 H 0.066 0.934 16 C -0.198 4.198 17 C 0.031 3.969 18 N -0.327 5.327 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.210 1.210 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.097 0.903 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.073 13.409 -15.603 20.801 hybrid contribution 0.444 -0.010 2.058 2.105 sum -2.629 13.399 -13.545 19.233 Atomic orbital electron populations 1.21810 0.93232 1.02293 1.02620 1.20147 0.96563 0.96160 0.92182 1.21782 1.01156 0.94244 1.02566 1.22916 0.94373 0.92593 0.94392 1.70656 1.20040 1.24371 0.96008 1.78668 1.14518 1.07932 1.25005 1.82927 1.40582 1.25664 0.94680 1.27835 1.10617 1.04271 0.99900 1.16514 0.78630 0.80657 0.86194 1.90795 1.56984 1.67030 1.23850 1.47690 1.56735 1.19880 1.08329 1.22178 1.00658 1.02355 0.82946 1.21960 0.97800 0.94761 0.85759 1.22537 0.93988 0.90992 0.90351 0.93352 1.23781 0.99113 0.98966 0.97953 1.22301 0.91298 0.96066 0.87247 1.46039 1.38262 1.07124 1.41248 1.18970 1.10654 0.94275 1.11311 0.90404 1.24763 0.99777 0.95450 1.00188 1.69805 1.43133 0.99158 1.44593 0.86233 0.81274 0.76731 0.81709 1.21179 1.21593 1.21050 0.91387 0.91916 0.92598 0.86003 0.91425 0.92664 0.91966 0.91315 0.88082 0.92085 0.89087 0.90036 0.93417 0.90887 0.95895 0.90335 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.16 37.16 0.34 -1.10 16 2 C -0.03 -0.33 3.25 -91.78 -0.30 -0.63 16 3 C -0.14 -1.39 9.16 37.16 0.34 -1.05 16 4 C 0.10 1.32 5.53 -82.85 -0.46 0.86 16 5 N -0.25 -3.20 11.51 33.42 0.38 -2.81 16 6 N -0.28 -3.45 12.51 60.35 0.75 -2.69 16 7 S 0.42 4.03 19.06 -107.50 -2.05 1.98 16 8 C -0.29 -3.55 6.49 -35.95 -0.23 -3.78 16 9 C 0.60 8.64 7.62 -12.64 -0.10 8.54 16 10 O -0.51 -8.93 14.25 5.25 0.07 -8.86 16 11 N -0.59 -7.92 2.78 -182.95 -0.51 -8.43 16 12 C 0.06 0.59 8.79 59.85 0.53 1.12 16 13 C 0.12 1.99 5.25 -4.04 -0.02 1.96 16 14 C 0.13 2.54 4.54 -66.86 -0.30 2.24 16 15 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 16 C -0.16 -2.82 7.31 -25.79 -0.19 -3.01 16 17 C 0.16 3.57 7.65 -2.84 -0.02 3.54 16 18 N -0.60 -14.77 3.58 -169.73 -0.61 -15.38 16 19 C -0.22 -6.09 10.51 -15.06 -0.16 -6.25 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 22 N -0.92 -26.66 11.32 55.49 0.63 -26.03 16 23 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.12 1.63 5.54 -51.93 -0.29 1.35 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.48 7.99 -51.93 -0.42 0.07 16 35 H 0.10 0.88 6.66 -51.93 -0.35 0.53 16 36 H 0.06 0.49 4.58 -25.38 -0.12 0.38 16 37 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 38 H 0.08 1.49 7.56 -51.93 -0.39 1.09 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.18 6.94 -51.93 -0.36 0.82 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.97 6.97 -51.93 -0.36 1.61 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -32.00 360.32 -7.63 -39.63 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.05 Total: -1.79 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.67 Total: 2.20 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.65 Total: -55.35 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.07 Total: -8.86 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.05 Total: 1.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.00 -7.63 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085889445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.147 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds