Wall clock time and date at job start Tue Mar 31 2020 14:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 H 1.09004 * 109.99988 * 305.03066 * 3 2 1 5 5 C 1.54334 * 109.99095 * 183.99643 * 3 2 1 6 6 H 1.09003 * 110.51446 * 336.97533 * 5 3 2 7 7 N 1.46503 * 111.00462 * 100.12280 * 5 3 2 8 8 C 1.34774 * 119.99565 * 200.23363 * 7 5 3 9 9 O 1.21562 * 120.00691 * 0.02562 * 8 7 5 10 10 C 1.47729 * 119.99576 * 179.97438 * 8 7 5 11 11 C 1.39657 * 120.11119 * 359.72713 * 10 8 7 12 12 C 1.37848 * 119.92618 * 179.71997 * 11 10 8 13 13 C 1.38601 * 120.14591 * 0.57654 * 12 11 10 14 14 F 1.35101 * 119.88817 * 179.71454 * 13 12 11 15 15 C 1.38838 * 120.22400 * 359.70155 * 13 12 11 16 16 F 1.35092 * 119.96627 * 180.02562 * 15 13 12 17 17 C 1.38058 * 120.06858 * 359.97438 * 15 13 12 18 18 C 1.55153 * 103.02023 * 218.66505 * 5 3 2 19 19 C 1.54912 * 101.58360 * 35.30104 * 18 5 3 20 20 N 1.47015 * 109.88624 * 66.12381 * 3 2 1 21 21 C 1.36933 * 125.64947 * 298.39962 * 20 3 2 22 22 H 1.08001 * 120.00046 * 332.38152 * 21 20 3 23 23 C 1.38816 * 120.00403 * 152.38038 * 21 20 3 24 24 N 1.31613 * 120.00274 * 170.70025 * 23 21 20 25 25 Si 1.86804 * 119.99842 * 350.71034 * 23 21 20 26 26 H 1.48495 * 109.47208 * 185.76343 * 25 23 21 27 27 H 1.48500 * 109.46689 * 305.76579 * 25 23 21 28 28 H 1.48506 * 109.47238 * 65.76003 * 25 23 21 29 29 H 1.08997 * 109.47298 * 172.49588 * 1 2 3 30 30 H 1.09002 * 109.47248 * 292.50042 * 1 2 3 31 31 H 1.09001 * 109.47258 * 52.49654 * 1 2 3 32 32 H 1.09002 * 109.47037 * 239.99793 * 2 1 3 33 33 H 1.08993 * 109.46731 * 119.99702 * 2 1 3 34 34 H 0.96995 * 119.99578 * 20.23605 * 7 5 3 35 35 H 1.08009 * 120.03113 * 0.02562 * 11 10 8 36 36 H 1.07998 * 119.92296 * 180.29262 * 12 11 10 37 37 H 1.08002 * 120.07290 * 180.02562 * 17 15 13 38 38 H 1.09002 * 111.00582 * 277.23180 * 18 5 3 39 39 H 1.09000 * 111.04021 * 153.39424 * 18 5 3 40 40 H 1.08999 * 110.37030 * 204.15360 * 19 18 5 41 41 H 1.09001 * 110.36222 * 81.83137 * 19 18 5 42 42 H 0.97006 * 120.00278 * 5.62658 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6099 1.9900 -0.8387 5 6 3.5799 1.4577 -0.1011 6 1 3.9951 0.5129 0.2498 7 7 4.0134 1.7345 -1.4729 8 6 5.2576 1.3983 -1.8671 9 8 6.0199 0.8650 -1.0847 10 6 5.6945 1.6768 -3.2505 11 6 4.8184 2.2833 -4.1533 12 6 5.2320 2.5467 -5.4416 13 6 6.5115 2.2002 -5.8465 14 9 6.9095 2.4556 -7.1120 15 6 7.3856 1.5918 -4.9558 16 9 8.6317 1.2568 -5.3557 17 6 6.9831 1.3299 -3.6614 18 6 3.9809 2.6192 0.8463 19 6 2.9165 2.4902 1.9644 20 7 1.6790 2.1005 1.2642 21 6 0.4047 2.3111 1.7189 22 1 -0.4094 2.4126 1.0165 23 6 0.1591 2.3941 3.0826 24 7 -1.0233 2.7763 3.5163 25 14 1.5069 1.9635 4.3022 26 1 0.9562 1.9971 5.6809 27 1 2.0238 0.6027 4.0086 28 1 2.6124 2.9485 4.1866 29 1 -0.3634 -1.0188 -0.1342 30 1 -0.3634 0.3933 0.9494 31 1 -0.3634 0.6257 -0.8153 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.4050 2.1597 -2.0972 35 1 3.8195 2.5500 -3.8409 36 1 4.5560 3.0199 -6.1383 37 1 7.6632 0.8570 -2.9684 38 1 3.9013 3.5813 0.3403 39 1 4.9850 2.4710 1.2437 40 1 2.7808 3.4457 2.4710 41 1 3.2075 1.7194 2.6780 42 1 -1.7472 2.9213 2.8871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087601963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:06 Heat of formation + Delta-G solvation = -73.945683 kcal Electronic energy + Delta-G solvation = -27298.393222 eV Core-core repulsion = 23108.152925 eV Total energy + Delta-G solvation = -4190.240297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.91899 -48.98605 -40.53877 -38.87435 -37.79011 -34.48160 -32.60870 -32.42182 -31.53656 -31.03614 -29.13203 -27.24765 -24.83281 -23.71005 -23.55367 -22.14470 -21.41029 -20.51433 -19.66750 -18.60376 -17.93939 -17.58515 -17.48105 -16.76613 -16.57376 -16.21423 -15.39330 -15.11317 -15.00523 -14.92696 -14.88339 -14.54173 -13.98567 -13.54251 -13.46162 -13.31315 -13.18124 -13.07895 -12.56254 -12.48346 -12.18884 -11.84554 -11.80202 -11.51550 -11.32880 -10.94442 -10.58168 -10.41047 -10.17660 -10.15791 -10.01411 -9.65183 -9.52402 -9.29860 -9.07048 -8.95963 -8.58352 -7.12258 -6.29811 -3.40523 0.05136 0.47234 2.31217 2.87171 3.24353 3.26239 3.39562 3.49161 3.66763 3.84880 4.01795 4.25909 4.35840 4.55356 4.55694 4.87019 5.05721 5.14185 5.17095 5.25767 5.30167 5.31311 5.41998 5.53683 5.58673 5.72353 5.81422 5.86101 6.01486 6.08136 6.14683 6.21795 6.32070 6.45898 6.53428 6.55675 6.65726 6.68217 6.94251 7.25898 7.37586 7.77810 8.03635 8.29051 8.96181 9.47126 10.19399 11.11303 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002786 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.886952 B =10047.877353 C =10485.933554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.158 3.842 4 H 0.041 0.959 5 C 0.132 3.868 6 H 0.098 0.902 7 N -0.706 5.706 8 C 0.558 3.442 9 O -0.530 6.530 10 C -0.110 4.110 11 C -0.067 4.067 12 C -0.130 4.130 13 C 0.089 3.911 14 F -0.124 7.124 15 C 0.062 3.938 16 F -0.124 7.124 17 C -0.068 4.068 18 C -0.140 4.140 19 C 0.109 3.891 20 N -0.600 5.600 21 C -0.313 4.313 22 H 0.075 0.925 23 C -0.015 4.015 24 N -0.926 5.926 25 Si 1.066 2.934 26 H -0.300 1.300 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.399 0.601 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.929 -1.209 -17.920 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.058 0.942 5 C 0.028 3.972 6 H 0.116 0.884 7 N -0.357 5.357 8 C 0.344 3.656 9 O -0.407 6.407 10 C -0.113 4.113 11 C -0.086 4.086 12 C -0.149 4.149 13 C 0.068 3.932 14 F -0.103 7.103 15 C 0.041 3.959 16 F -0.103 7.103 17 C -0.088 4.088 18 C -0.180 4.180 19 C -0.016 4.016 20 N -0.327 5.327 21 C -0.441 4.441 22 H 0.092 0.908 23 C -0.216 4.216 24 N -0.566 5.566 25 Si 0.898 3.102 26 H -0.228 1.228 27 H -0.219 1.219 28 H -0.212 1.212 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.178 0.822 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.774 -1.605 -15.752 20.986 hybrid contribution -0.366 0.155 -2.405 2.437 sum 13.407 -1.450 -18.157 22.617 Atomic orbital electron populations 1.21906 0.95454 0.99113 1.04320 1.21888 0.97211 0.97254 0.99976 1.21189 0.89488 0.92651 0.91657 0.94177 1.22197 0.95828 0.99389 0.79788 0.88431 1.45943 1.13874 1.61577 1.14314 1.17938 0.82287 0.78950 0.86420 1.90807 1.53106 1.42559 1.54267 1.19932 0.94358 1.02154 0.94900 1.21320 0.99876 0.95411 0.91962 1.21042 0.94080 1.02097 0.97688 1.17942 0.94039 1.01285 0.79894 1.91558 1.90956 1.91791 1.35969 1.17502 0.81303 1.03529 0.93526 1.91560 1.37519 1.90348 1.90862 1.21189 0.96449 0.97557 0.93576 1.23147 0.99227 0.98095 0.97509 1.22203 0.86499 0.98761 0.94137 1.44745 1.01803 1.66047 1.20113 1.19981 0.83173 1.48495 0.92461 0.90783 1.26103 1.01562 0.97847 0.96078 1.70929 1.02301 1.45956 1.37376 0.83860 0.74220 0.76624 0.75528 1.22751 1.21853 1.21153 0.95016 0.88883 0.94306 0.93965 0.92333 0.76510 0.83552 0.82816 0.82177 0.91041 0.91080 0.91580 0.95532 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.05 37.16 0.34 -2.44 16 2 C -0.12 -2.16 5.46 -26.73 -0.15 -2.30 16 3 C 0.16 2.80 3.00 -66.95 -0.20 2.60 16 4 H 0.04 0.69 7.70 -51.93 -0.40 0.29 16 5 C 0.13 2.05 2.76 -66.09 -0.18 1.87 16 6 H 0.10 1.63 7.39 -51.93 -0.38 1.25 16 7 N -0.71 -8.48 5.16 -53.00 -0.27 -8.76 16 8 C 0.56 7.01 7.77 -12.38 -0.10 6.91 16 9 O -0.53 -8.54 16.07 5.31 0.09 -8.45 16 10 C -0.11 -1.06 5.87 -104.97 -0.62 -1.67 16 11 C -0.07 -0.46 9.53 -39.19 -0.37 -0.84 16 12 C -0.13 -0.86 10.01 -39.59 -0.40 -1.25 16 13 C 0.09 0.77 7.31 -39.23 -0.29 0.48 16 14 F -0.12 -1.18 17.17 2.25 0.04 -1.14 16 15 C 0.06 0.59 7.30 -39.43 -0.29 0.30 16 16 F -0.12 -1.32 17.17 2.25 0.04 -1.28 16 17 C -0.07 -0.66 9.57 -39.13 -0.37 -1.03 16 18 C -0.14 -2.30 6.77 -24.58 -0.17 -2.47 16 19 C 0.11 2.22 4.50 -2.53 -0.01 2.21 16 20 N -0.60 -13.22 2.89 -162.57 -0.47 -13.69 16 21 C -0.31 -8.10 7.70 -15.06 -0.12 -8.22 16 22 H 0.07 2.04 7.42 -52.49 -0.39 1.65 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.65 13.70 55.49 0.76 -26.89 16 25 Si 1.07 25.67 24.68 -169.99 -4.19 21.47 16 26 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.29 -6.83 7.03 56.52 0.40 -6.43 16 28 H -0.28 -6.28 5.55 56.52 0.31 -5.97 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.07 5.49 -51.93 -0.28 1.79 16 31 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.40 3.70 6.36 -40.82 -0.26 3.44 16 35 H 0.15 0.68 6.40 -52.48 -0.34 0.35 16 36 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.16 1.56 7.65 -52.49 -0.40 1.16 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.42 6.48 -51.93 -0.34 1.08 16 41 H 0.03 0.57 5.48 -51.93 -0.28 0.28 16 42 H 0.26 7.74 8.73 -40.82 -0.36 7.38 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -30.80 344.61 -7.11 -37.92 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.28 Total: 1.99 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.01 Total: -6.36 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.02 Total: -49.34 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -4.19 Total: 21.47 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.80 -7.11 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087601963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.030 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds