Wall clock time and date at job start Tue Mar 31 2020 14:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 H 1.09005 * 109.99867 * 302.38487 * 3 2 1 5 5 C 1.54318 * 109.88457 * 181.28977 * 3 2 1 6 6 H 1.09005 * 110.71971 * 336.92670 * 5 3 2 7 7 N 1.46504 * 110.72369 * 100.02280 * 5 3 2 8 8 C 1.34772 * 120.00068 * 202.56159 * 7 5 3 9 9 O 1.21572 * 120.00431 * 359.97438 * 8 7 5 10 10 C 1.47696 * 119.99960 * 179.97438 * 8 7 5 11 11 C 1.39659 * 120.15579 * 0.27536 * 10 8 7 12 12 C 1.38065 * 119.85504 * 180.31894 * 11 10 8 13 13 F 1.35094 * 119.92118 * 179.68096 * 12 11 10 14 14 C 1.38660 * 120.16484 * 359.65851 * 12 11 10 15 15 C 1.38185 * 120.31267 * 0.04519 * 14 12 11 16 16 C 1.38311 * 120.14792 * 359.97438 * 15 14 12 17 17 F 1.35100 * 120.08888 * 179.97438 * 16 15 14 18 18 C 1.55154 * 103.10337 * 218.47612 * 5 3 2 19 19 C 1.54910 * 101.58242 * 35.41376 * 18 5 3 20 20 N 1.47315 * 110.06762 * 63.55220 * 3 2 1 21 21 C 1.36943 * 125.61822 * 298.25168 * 20 3 2 22 22 H 1.07998 * 119.99414 * 326.21577 * 21 20 3 23 23 C 1.38809 * 120.00116 * 146.21772 * 21 20 3 24 24 N 1.31617 * 120.00230 * 162.09343 * 23 21 20 25 25 Si 1.86804 * 120.00047 * 342.09145 * 23 21 20 26 26 H 1.48496 * 109.47103 * 88.97591 * 25 23 21 27 27 H 1.48504 * 109.47195 * 208.97708 * 25 23 21 28 28 H 1.48498 * 109.47047 * 328.97625 * 25 23 21 29 29 H 1.09005 * 109.47006 * 292.18290 * 1 2 3 30 30 H 1.09001 * 109.46849 * 52.18214 * 1 2 3 31 31 H 1.09000 * 109.47281 * 172.18319 * 1 2 3 32 32 H 1.08995 * 109.47283 * 239.99187 * 2 1 3 33 33 H 1.09002 * 109.46705 * 119.99429 * 2 1 3 34 34 H 0.96999 * 119.99678 * 22.55704 * 7 5 3 35 35 H 1.08001 * 120.07375 * 0.02562 * 11 10 8 36 36 H 1.08000 * 119.84703 * 180.02562 * 14 12 11 37 37 H 1.08000 * 119.92832 * 179.97438 * 15 14 12 38 38 H 1.09005 * 111.00338 * 153.48776 * 18 5 3 39 39 H 1.09004 * 111.00522 * 277.29555 * 18 5 3 40 40 H 1.08991 * 110.36609 * 81.82716 * 19 18 5 41 41 H 1.09000 * 110.36369 * 204.15700 * 19 18 5 42 42 H 0.96996 * 120.00192 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6471 1.9768 -0.8650 5 6 3.5828 1.4537 -0.0327 6 1 3.9835 0.5155 0.3515 7 7 4.0708 1.7060 -1.3908 8 6 5.3130 1.3198 -1.7432 9 8 6.0289 0.7625 -0.9339 10 6 5.8047 1.5738 -3.1125 11 6 4.9873 2.2189 -4.0431 12 6 5.4508 2.4472 -5.3235 13 9 4.6588 3.0654 -6.2266 14 6 6.7274 2.0440 -5.6845 15 6 7.5443 1.4106 -4.7675 16 6 7.0929 1.1750 -3.4815 17 9 7.8924 0.5552 -2.5860 18 6 3.9461 2.6321 0.9089 19 6 2.8352 2.5255 1.9834 20 7 1.6275 2.1245 1.2389 21 6 0.3355 2.3466 1.6347 22 1 -0.4299 2.5377 0.8971 23 6 0.0097 2.3263 2.9839 24 7 -1.1138 2.8726 3.3979 25 14 1.1659 1.5234 4.2120 26 1 2.1476 2.5267 4.6965 27 1 0.3831 1.0018 5.3610 28 1 1.8862 0.4035 3.5546 29 1 -0.3633 0.3880 0.9516 30 1 -0.3633 0.6301 -0.8118 31 1 -0.3634 -1.0181 -0.1398 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.4998 2.1510 -2.0364 35 1 3.9930 2.5343 -3.7633 36 1 7.0849 2.2256 -6.6874 37 1 8.5373 1.0988 -5.0555 38 1 4.9322 2.4894 1.3510 39 1 3.8907 3.5847 0.3819 40 1 3.0942 1.7678 2.7228 41 1 2.6804 3.4906 2.4659 42 1 -1.3417 2.8580 4.3406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087603555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:09 Heat of formation + Delta-G solvation = -72.732746 kcal Electronic energy + Delta-G solvation = -27661.184512 eV Core-core repulsion = 23470.996812 eV Total energy + Delta-G solvation = -4190.187700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.35292 -49.15480 -40.33303 -38.81877 -37.78916 -34.39224 -32.56066 -32.48740 -31.69583 -30.43789 -29.31890 -27.15906 -25.09631 -24.12503 -23.05891 -22.13019 -21.31020 -20.47296 -19.67275 -18.43033 -17.80975 -17.58215 -16.99813 -16.47436 -16.31976 -15.96393 -15.68900 -15.13905 -15.01013 -14.75430 -14.71707 -14.46445 -13.81591 -13.62555 -13.47839 -13.19912 -12.94304 -12.86865 -12.46179 -12.32308 -12.17479 -11.92591 -11.88733 -11.41652 -11.09026 -10.86695 -10.68816 -10.49363 -10.28473 -10.20607 -9.97917 -9.89902 -9.82798 -9.48637 -9.07137 -8.88599 -8.57505 -6.93174 -6.02664 -3.43330 0.12217 0.47373 2.41095 2.93939 3.23232 3.33809 3.46204 3.50889 3.62789 3.69393 4.02088 4.19891 4.48575 4.50544 4.60187 4.90411 5.01735 5.13418 5.17384 5.27258 5.28105 5.39092 5.46658 5.53516 5.56365 5.78382 5.87020 5.92493 6.08746 6.14339 6.20741 6.27601 6.37421 6.53535 6.60693 6.62577 6.72475 6.74211 7.01107 7.39077 7.42117 7.81973 8.09007 8.28031 8.78403 9.61025 10.15804 11.12688 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.003255 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.043812 B = 8601.332376 C = 9260.283862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.155 3.845 4 H 0.046 0.954 5 C 0.133 3.867 6 H 0.098 0.902 7 N -0.706 5.706 8 C 0.556 3.444 9 O -0.520 6.520 10 C -0.139 4.139 11 C -0.093 4.093 12 C 0.083 3.917 13 F -0.131 7.131 14 C -0.101 4.101 15 C -0.135 4.135 16 C 0.150 3.850 17 F -0.109 7.109 18 C -0.141 4.141 19 C 0.117 3.883 20 N -0.598 5.598 21 C -0.236 4.236 22 H 0.088 0.912 23 C 0.033 3.967 24 N -0.905 5.905 25 Si 0.880 3.120 26 H -0.285 1.285 27 H -0.301 1.301 28 H -0.270 1.270 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.399 0.601 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.234 -1.682 -18.684 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.049 3.951 4 H 0.063 0.937 5 C 0.028 3.972 6 H 0.116 0.884 7 N -0.357 5.357 8 C 0.341 3.659 9 O -0.397 6.397 10 C -0.143 4.143 11 C -0.113 4.113 12 C 0.064 3.936 13 F -0.109 7.109 14 C -0.120 4.120 15 C -0.154 4.154 16 C 0.129 3.871 17 F -0.087 7.087 18 C -0.180 4.180 19 C -0.008 4.008 20 N -0.324 5.324 21 C -0.363 4.363 22 H 0.105 0.895 23 C -0.168 4.168 24 N -0.547 5.547 25 Si 0.710 3.290 26 H -0.212 1.212 27 H -0.229 1.229 28 H -0.195 1.195 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.235 0.765 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.510 -2.029 -17.896 23.769 hybrid contribution 0.273 -0.233 0.448 0.574 sum 15.782 -2.262 -17.448 23.636 Atomic orbital electron populations 1.21908 0.95074 0.99022 1.04801 1.21887 0.97522 0.97082 0.99905 1.21301 0.89245 0.92529 0.92073 0.93656 1.22205 0.95267 0.99453 0.80232 0.88388 1.45942 1.14800 1.60256 1.14751 1.17822 0.82333 0.79486 0.86231 1.90861 1.55701 1.41488 1.51608 1.20003 0.94327 1.04208 0.95805 1.21247 1.00836 0.97819 0.91371 1.17466 0.89947 0.98897 0.87304 1.91557 1.73167 1.80187 1.66008 1.21187 0.92046 0.97641 1.01151 1.21022 1.01892 1.01363 0.91144 1.17702 0.87818 0.94214 0.87364 1.91631 1.71667 1.78853 1.66522 1.23137 0.99052 0.98054 0.97781 1.21923 0.86495 0.98653 0.93763 1.44774 1.01782 1.64369 1.21518 1.18446 0.83164 1.42661 0.92073 0.89451 1.25370 0.95658 0.98467 0.97260 1.69787 1.24515 1.44801 1.15572 0.86885 0.80271 0.80916 0.80961 1.21190 1.22887 1.19532 0.88607 0.93968 0.95171 0.93941 0.92568 0.76529 0.83128 0.83168 0.82907 0.91238 0.90945 0.95725 0.92181 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.03 37.16 0.34 -2.52 16 2 C -0.12 -2.25 5.49 -26.73 -0.15 -2.40 16 3 C 0.16 2.85 3.03 -66.80 -0.20 2.65 16 4 H 0.05 0.80 7.70 -51.93 -0.40 0.40 16 5 C 0.13 2.18 2.79 -66.10 -0.18 2.00 16 6 H 0.10 1.76 7.33 -51.93 -0.38 1.38 16 7 N -0.71 -9.35 5.14 -53.02 -0.27 -9.62 16 8 C 0.56 7.85 7.77 -12.40 -0.10 7.75 16 9 O -0.52 -9.31 15.02 5.30 0.08 -9.23 16 10 C -0.14 -1.53 5.88 -104.92 -0.62 -2.15 16 11 C -0.09 -0.80 9.51 -39.11 -0.37 -1.17 16 12 C 0.08 0.66 7.29 -39.49 -0.29 0.37 16 13 F -0.13 -1.12 17.26 2.25 0.04 -1.08 16 14 C -0.10 -0.63 10.01 -39.45 -0.39 -1.02 16 15 C -0.14 -0.94 10.01 -39.57 -0.40 -1.34 16 16 C 0.15 1.58 7.28 -38.97 -0.28 1.29 16 17 F -0.11 -1.42 15.55 2.25 0.04 -1.39 16 18 C -0.14 -2.41 6.77 -24.58 -0.17 -2.57 16 19 C 0.12 2.45 4.97 -2.53 -0.01 2.44 16 20 N -0.60 -13.41 2.73 -162.35 -0.44 -13.86 16 21 C -0.24 -6.17 7.36 -15.06 -0.11 -6.29 16 22 H 0.09 2.45 7.81 -52.49 -0.41 2.04 16 23 C 0.03 0.91 5.45 -17.43 -0.10 0.81 16 24 N -0.90 -26.77 13.97 55.49 0.78 -26.00 16 25 Si 0.88 22.07 24.71 -169.99 -4.20 17.87 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.27 -6.70 6.76 56.52 0.38 -6.31 16 29 H 0.10 2.17 5.60 -51.93 -0.29 1.88 16 30 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.40 4.20 6.37 -40.82 -0.26 3.94 16 35 H 0.15 1.04 6.41 -52.49 -0.34 0.70 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.55 5.29 -51.93 -0.27 0.28 16 41 H 0.06 1.31 7.99 -51.93 -0.41 0.90 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -31.54 345.79 -7.11 -38.65 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.30 Total: 1.59 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -3.03 Total: -2.15 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.06 Total: -49.48 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.07 Total: -2.47 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.20 Total: 17.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.54 -7.11 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087603555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.078 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds