Wall clock time and date at job start Tue Mar 31 2020 14:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47083 * 2 1 4 4 H 1.09002 * 109.99765 * 55.88907 * 3 2 1 5 5 C 1.54326 * 109.88521 * 294.79388 * 3 2 1 6 6 H 1.08991 * 110.71836 * 336.75507 * 5 3 2 7 7 N 1.46498 * 110.71982 * 100.02840 * 5 3 2 8 8 C 1.34778 * 120.00202 * 205.00324 * 7 5 3 9 9 O 1.21587 * 119.99806 * 359.97438 * 8 7 5 10 10 C 1.47538 * 120.00085 * 179.97438 * 8 7 5 11 11 C 1.39909 * 120.18568 * 89.72047 * 10 8 7 12 12 F 1.35100 * 120.09535 * 0.02562 * 11 10 8 13 13 C 1.38222 * 119.80509 * 179.74398 * 11 10 8 14 14 C 1.38310 * 120.18953 * 0.53198 * 13 11 10 15 15 C 1.38310 * 120.38094 * 359.74631 * 14 13 11 16 16 C 1.38216 * 120.18983 * 359.97288 * 15 14 13 17 17 F 1.35108 * 120.09710 * 180.02562 * 16 15 14 18 18 C 1.55157 * 102.94243 * 218.39086 * 5 3 2 19 19 C 1.54908 * 101.58236 * 35.49849 * 18 5 3 20 20 N 1.47026 * 109.88259 * 176.98405 * 3 2 1 21 21 C 1.36940 * 125.64792 * 298.32798 * 20 3 2 22 22 H 1.07997 * 119.99516 * 345.36760 * 21 20 3 23 23 C 1.38808 * 119.99845 * 165.36568 * 21 20 3 24 24 N 1.31620 * 120.00222 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99981 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46912 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46810 * 120.00001 * 25 23 21 28 28 H 1.48492 * 109.47437 * 240.00453 * 25 23 21 29 29 H 1.09004 * 109.46889 * 305.58180 * 1 2 3 30 30 H 1.08995 * 109.47155 * 65.58305 * 1 2 3 31 31 H 1.09001 * 109.47203 * 185.58932 * 1 2 3 32 32 H 1.08995 * 109.46794 * 240.00304 * 2 1 3 33 33 H 1.09000 * 109.47118 * 120.00626 * 2 1 3 34 34 H 0.97001 * 120.00316 * 24.99535 * 7 5 3 35 35 H 1.08002 * 119.90822 * 180.30250 * 13 11 10 36 36 H 1.07999 * 119.80597 * 179.76439 * 14 13 11 37 37 H 1.07995 * 119.90083 * 179.97438 * 15 14 13 38 38 H 1.08993 * 111.00706 * 153.57704 * 18 5 3 39 39 H 1.09006 * 111.00315 * 277.42718 * 18 5 3 40 40 H 1.09004 * 110.36911 * 204.15131 * 19 18 5 41 41 H 1.09008 * 110.45474 * 81.87826 * 19 18 5 42 42 H 0.96993 * 120.00283 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6227 1.9854 0.8481 5 6 1.6412 2.1402 -1.3175 6 1 1.4663 1.4069 -2.1046 7 7 0.4593 2.9831 -1.1204 8 6 -0.3450 3.2703 -2.1631 9 8 -0.0894 2.8303 -3.2673 10 6 -1.5357 4.1187 -1.9645 11 6 -1.4408 5.5076 -2.1031 12 9 -0.2576 6.0776 -2.4201 13 6 -2.5624 6.2945 -1.9205 14 6 -3.7735 5.7135 -1.5909 15 6 -3.8748 4.3417 -1.4463 16 6 -2.7646 3.5394 -1.6309 17 9 -2.8658 2.1996 -1.4896 18 6 2.8860 3.0076 -1.6420 19 6 4.0370 2.0989 -1.1428 20 7 3.5084 1.4537 0.0727 21 6 4.2605 0.9490 1.0999 22 1 3.7942 0.7122 2.0448 23 6 5.6220 0.7417 0.9264 24 7 6.1903 1.0307 -0.2251 25 14 6.6481 0.0539 2.3277 26 1 5.7780 -0.1851 3.5072 27 1 7.2696 -1.2265 1.9040 28 1 7.7120 1.0260 2.6857 29 1 -0.3633 0.5980 0.8358 30 1 -0.3633 0.4248 -0.9357 31 1 -0.3634 -1.0228 0.1001 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.2554 3.3343 -0.2395 35 1 -2.4922 7.3665 -2.0319 36 1 -4.6451 6.3345 -1.4459 37 1 -4.8242 3.8962 -1.1883 38 1 2.9677 3.1884 -2.7137 39 1 2.8624 3.9471 -1.0896 40 1 4.9161 2.6972 -0.9030 41 1 4.2831 1.3485 -1.8942 42 1 7.1417 0.8863 -0.3462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087808531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:15 Heat of formation + Delta-G solvation = -76.770699 kcal Electronic energy + Delta-G solvation = -28074.242543 eV Core-core repulsion = 23883.879745 eV Total energy + Delta-G solvation = -4190.362799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.33227 -49.30785 -40.06217 -38.76681 -37.57608 -34.07801 -32.78928 -32.02281 -31.30343 -30.78667 -28.94911 -26.65327 -24.90556 -23.93693 -23.22676 -22.19921 -20.81917 -20.22805 -19.74419 -18.54439 -17.63399 -17.60852 -16.91166 -16.45886 -15.98921 -15.87780 -15.59906 -15.53858 -14.77790 -14.73550 -14.39097 -14.11122 -13.98304 -13.71161 -13.24716 -13.14725 -12.71188 -12.41066 -12.30843 -12.27189 -11.98648 -11.92559 -11.64447 -11.15325 -10.91274 -10.84677 -10.62054 -10.46550 -10.36611 -10.05898 -9.89834 -9.71416 -9.65852 -9.44527 -9.19896 -8.71115 -8.58393 -6.81097 -5.75644 -3.12201 0.38041 0.53806 2.47464 2.83331 3.14584 3.38424 3.41400 3.44574 3.46676 3.95941 4.20941 4.42325 4.44808 4.53188 4.66283 5.19465 5.29252 5.33702 5.36141 5.45666 5.49849 5.54776 5.55115 5.67384 5.77045 5.80577 5.86423 6.07826 6.22752 6.25178 6.25875 6.42437 6.47592 6.55145 6.67375 6.71995 6.94831 7.12396 7.50552 7.55556 7.62903 7.78824 8.19239 8.26795 9.17655 9.78561 10.46445 11.36386 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.003353 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.106155 B = 8348.002596 C = 8968.575425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.136 3.864 6 H 0.097 0.903 7 N -0.698 5.698 8 C 0.563 3.437 9 O -0.521 6.521 10 C -0.195 4.195 11 C 0.164 3.836 12 F -0.119 7.119 13 C -0.167 4.167 14 C -0.048 4.048 15 C -0.167 4.167 16 C 0.164 3.836 17 F -0.119 7.119 18 C -0.156 4.156 19 C 0.174 3.826 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.003 4.003 24 N -0.916 5.916 25 Si 0.910 3.090 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.402 10.145 -1.542 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.032 3.968 6 H 0.115 0.885 7 N -0.347 5.347 8 C 0.347 3.653 9 O -0.397 6.397 10 C -0.201 4.201 11 C 0.144 3.856 12 F -0.097 7.097 13 C -0.186 4.186 14 C -0.066 4.066 15 C -0.186 4.186 16 C 0.143 3.857 17 F -0.097 7.097 18 C -0.196 4.196 19 C 0.049 3.951 20 N -0.319 5.319 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.562 5.562 25 Si 0.740 3.260 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.888 9.719 -2.301 23.153 hybrid contribution 0.687 -0.400 1.044 1.312 sum -20.202 9.318 -1.257 22.283 Atomic orbital electron populations 1.21767 0.97164 1.00537 1.00947 1.22013 0.93606 0.99044 1.02467 1.21072 0.87143 0.93410 0.93025 0.94721 1.22218 0.83067 0.92428 0.99130 0.88516 1.46052 1.26447 1.51254 1.10950 1.17673 0.81981 0.80421 0.85267 1.90834 1.72728 1.52117 1.24048 1.20089 0.95678 0.93716 1.10568 1.17353 0.82134 0.88758 0.97386 1.91605 1.44218 1.84400 1.89449 1.21192 0.91539 1.01293 1.04547 1.20986 0.97348 0.93818 0.94457 1.21181 0.98310 0.94096 1.05010 1.17336 0.92516 0.77877 0.97940 1.91600 1.96522 1.29077 1.92513 1.23437 0.96576 0.99106 1.00491 1.21436 0.93066 0.92895 0.87683 1.44455 0.98300 1.68412 1.20699 1.18984 0.89926 1.35891 0.90795 0.90645 1.24914 0.97236 1.00907 0.96975 1.69936 1.10589 1.52851 1.22826 0.86081 0.80243 0.78488 0.81153 1.20443 1.21689 1.21750 0.93517 0.93335 0.93620 0.92309 0.91636 0.76591 0.83340 0.83436 0.83360 0.91810 0.91911 0.90730 0.95312 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.58 37.16 0.36 -1.92 16 2 C -0.13 -2.50 5.41 -26.73 -0.14 -2.65 16 3 C 0.16 3.26 2.94 -66.95 -0.20 3.06 16 4 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 5 C 0.14 2.53 2.01 -66.10 -0.13 2.40 16 6 H 0.10 1.96 7.19 -51.93 -0.37 1.59 16 7 N -0.70 -10.90 4.91 -53.07 -0.26 -11.16 16 8 C 0.56 9.18 6.54 -12.47 -0.08 9.10 16 9 O -0.52 -10.48 16.75 5.29 0.09 -10.39 16 10 C -0.20 -2.49 5.64 -104.86 -0.59 -3.08 16 11 C 0.16 1.82 7.29 -38.96 -0.28 1.53 16 12 F -0.12 -1.54 16.83 2.25 0.04 -1.51 16 13 C -0.17 -1.21 10.01 -39.56 -0.40 -1.61 16 14 C -0.05 -0.27 10.03 -39.53 -0.40 -0.66 16 15 C -0.17 -1.19 10.01 -39.56 -0.40 -1.59 16 16 C 0.16 1.78 7.29 -38.97 -0.28 1.49 16 17 F -0.12 -1.49 16.83 2.25 0.04 -1.45 16 18 C -0.16 -3.14 6.77 -24.58 -0.17 -3.30 16 19 C 0.17 4.25 5.41 -2.53 -0.01 4.24 16 20 N -0.59 -14.76 3.13 -162.57 -0.51 -15.26 16 21 C -0.23 -6.17 9.75 -15.06 -0.15 -6.32 16 22 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 23 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 24 N -0.92 -26.61 10.57 55.49 0.59 -26.02 16 25 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.77 7.41 -51.93 -0.38 0.39 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.19 8.07 -51.93 -0.42 0.78 16 33 H 0.06 1.32 7.90 -51.93 -0.41 0.91 16 34 H 0.40 5.34 8.35 -40.82 -0.34 5.00 16 35 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 2.01 6.93 -51.93 -0.36 1.65 16 41 H 0.03 0.76 8.06 -51.92 -0.42 0.35 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -32.34 358.56 -8.22 -40.56 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.61 Total: 2.51 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.97 Total: 0.51 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.18 Total: -52.45 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.34 -8.22 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087808531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.209 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds