Wall clock time and date at job start Tue Mar 31 2020 14:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47083 * 2 1 4 4 H 1.09002 * 109.99765 * 55.88907 * 3 2 1 5 5 C 1.54326 * 109.88521 * 294.79388 * 3 2 1 6 6 H 1.08991 * 110.71836 * 336.75507 * 5 3 2 7 7 N 1.46498 * 110.71982 * 100.02840 * 5 3 2 8 8 C 1.34778 * 120.00202 * 205.00324 * 7 5 3 9 9 O 1.21587 * 119.99806 * 359.97438 * 8 7 5 10 10 C 1.47538 * 120.00085 * 179.97438 * 8 7 5 11 11 C 1.39909 * 120.18568 * 89.72047 * 10 8 7 12 12 F 1.35100 * 120.09535 * 0.02562 * 11 10 8 13 13 C 1.38222 * 119.80509 * 179.74398 * 11 10 8 14 14 C 1.38310 * 120.18953 * 0.53198 * 13 11 10 15 15 C 1.38310 * 120.38094 * 359.74631 * 14 13 11 16 16 C 1.38216 * 120.18983 * 359.97288 * 15 14 13 17 17 F 1.35108 * 120.09710 * 180.02562 * 16 15 14 18 18 C 1.55157 * 102.94243 * 218.39086 * 5 3 2 19 19 C 1.54908 * 101.58236 * 35.49849 * 18 5 3 20 20 N 1.47026 * 109.88259 * 176.98405 * 3 2 1 21 21 C 1.36940 * 125.64792 * 298.32798 * 20 3 2 22 22 H 1.07997 * 119.99516 * 345.36760 * 21 20 3 23 23 C 1.38808 * 119.99845 * 165.36568 * 21 20 3 24 24 N 1.31620 * 120.00222 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99981 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46912 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46810 * 120.00001 * 25 23 21 28 28 H 1.48492 * 109.47437 * 240.00453 * 25 23 21 29 29 H 1.09004 * 109.46889 * 305.58180 * 1 2 3 30 30 H 1.08995 * 109.47155 * 65.58305 * 1 2 3 31 31 H 1.09001 * 109.47203 * 185.58932 * 1 2 3 32 32 H 1.08995 * 109.46794 * 240.00304 * 2 1 3 33 33 H 1.09000 * 109.47118 * 120.00626 * 2 1 3 34 34 H 0.97001 * 120.00316 * 24.99535 * 7 5 3 35 35 H 1.08002 * 119.90822 * 180.30250 * 13 11 10 36 36 H 1.07999 * 119.80597 * 179.76439 * 14 13 11 37 37 H 1.07995 * 119.90083 * 179.97438 * 15 14 13 38 38 H 1.08993 * 111.00706 * 153.57704 * 18 5 3 39 39 H 1.09006 * 111.00315 * 277.42718 * 18 5 3 40 40 H 1.09004 * 110.36911 * 204.15131 * 19 18 5 41 41 H 1.09008 * 110.45474 * 81.87826 * 19 18 5 42 42 H 0.96993 * 120.00283 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6227 1.9854 0.8481 5 6 1.6412 2.1402 -1.3175 6 1 1.4663 1.4069 -2.1046 7 7 0.4593 2.9831 -1.1204 8 6 -0.3450 3.2703 -2.1631 9 8 -0.0894 2.8303 -3.2673 10 6 -1.5357 4.1187 -1.9645 11 6 -1.4408 5.5076 -2.1031 12 9 -0.2576 6.0776 -2.4201 13 6 -2.5624 6.2945 -1.9205 14 6 -3.7735 5.7135 -1.5909 15 6 -3.8748 4.3417 -1.4463 16 6 -2.7646 3.5394 -1.6309 17 9 -2.8658 2.1996 -1.4896 18 6 2.8860 3.0076 -1.6420 19 6 4.0370 2.0989 -1.1428 20 7 3.5084 1.4537 0.0727 21 6 4.2605 0.9490 1.0999 22 1 3.7942 0.7122 2.0448 23 6 5.6220 0.7417 0.9264 24 7 6.1903 1.0307 -0.2251 25 14 6.6481 0.0539 2.3277 26 1 5.7780 -0.1851 3.5072 27 1 7.2696 -1.2265 1.9040 28 1 7.7120 1.0260 2.6857 29 1 -0.3633 0.5980 0.8358 30 1 -0.3633 0.4248 -0.9357 31 1 -0.3634 -1.0228 0.1001 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.2554 3.3343 -0.2395 35 1 -2.4922 7.3665 -2.0319 36 1 -4.6451 6.3345 -1.4459 37 1 -4.8242 3.8962 -1.1883 38 1 2.9677 3.1884 -2.7137 39 1 2.8624 3.9471 -1.0896 40 1 4.9161 2.6972 -0.9030 41 1 4.2831 1.3485 -1.8942 42 1 7.1417 0.8863 -0.3462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087808531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:15 Heat of formation + Delta-G solvation = -96.892413 kcal Electronic energy + Delta-G solvation = -28075.115086 eV Core-core repulsion = 23883.879745 eV Total energy + Delta-G solvation = -4191.235342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.17845 -50.14695 -41.34522 -39.81350 -38.98656 -35.74184 -34.40132 -33.62076 -32.41526 -31.42259 -30.77078 -28.23160 -26.57468 -25.18735 -23.91443 -23.65309 -22.34598 -21.80912 -21.31608 -19.42477 -18.83246 -18.67058 -18.41388 -17.74434 -17.03828 -16.76234 -16.71910 -16.45877 -16.34369 -15.89469 -15.69129 -15.60794 -15.38349 -15.22526 -14.75346 -14.39700 -13.88721 -13.79218 -13.61232 -13.29787 -13.09495 -12.98385 -12.94340 -12.89477 -12.73923 -12.69192 -12.28622 -12.08778 -12.03044 -11.95132 -11.62158 -11.46370 -11.23519 -10.70859 -10.19851 -10.18007 -9.86148 -8.86521 -7.87223 -5.26044 -0.32061 -0.10329 1.22945 1.46526 1.47611 1.57793 1.87469 2.27950 2.49495 2.66651 3.28931 3.29473 3.34783 3.57680 3.72918 3.76626 3.78569 3.84437 4.10747 4.14788 4.30269 4.34731 4.53157 4.57309 4.61025 4.65538 4.67279 4.77563 4.92169 4.94145 5.00206 5.05963 5.13535 5.14100 5.20714 5.38928 5.45009 5.51104 5.58015 5.65868 5.67646 6.20346 6.28173 6.93691 7.06445 7.73360 8.40980 9.24431 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.003353 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.106155 B = 8348.002596 C = 8968.575425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 C 0.161 3.839 4 H 0.052 0.948 5 C 0.153 3.847 6 H 0.079 0.921 7 N -0.687 5.687 8 C 0.565 3.435 9 O -0.569 6.569 10 C -0.222 4.222 11 C 0.139 3.861 12 F -0.139 7.139 13 C -0.152 4.152 14 C -0.024 4.024 15 C -0.151 4.151 16 C 0.142 3.858 17 F -0.136 7.136 18 C -0.142 4.142 19 C 0.184 3.816 20 N -0.612 5.612 21 C -0.233 4.233 22 H 0.084 0.916 23 C -0.062 4.062 24 N -0.949 5.949 25 Si 0.977 3.023 26 H -0.263 1.263 27 H -0.295 1.295 28 H -0.292 1.292 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.413 0.587 35 H 0.178 0.822 36 H 0.198 0.802 37 H 0.180 0.820 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.044 0.956 41 H -0.004 1.004 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.293 11.830 0.174 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.054 3.946 4 H 0.070 0.930 5 C 0.047 3.953 6 H 0.097 0.903 7 N -0.337 5.337 8 C 0.351 3.649 9 O -0.448 6.448 10 C -0.227 4.227 11 C 0.119 3.881 12 F -0.117 7.117 13 C -0.170 4.170 14 C -0.042 4.042 15 C -0.169 4.169 16 C 0.122 3.878 17 F -0.114 7.114 18 C -0.182 4.182 19 C 0.058 3.942 20 N -0.337 5.337 21 C -0.362 4.362 22 H 0.101 0.899 23 C -0.256 4.256 24 N -0.598 5.598 25 Si 0.805 3.195 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.219 1.219 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.250 0.750 35 H 0.195 0.805 36 H 0.215 0.785 37 H 0.197 0.803 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.014 0.986 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -24.837 11.420 -0.546 27.342 hybrid contribution 1.769 -0.856 0.499 2.028 sum -23.068 10.565 -0.047 25.372 Atomic orbital electron populations 1.21635 0.94016 1.02013 1.01366 1.21898 0.96242 0.97542 1.00827 1.21226 0.84664 0.94582 0.94147 0.93018 1.21763 0.83723 0.92000 0.97771 0.90337 1.45856 1.25361 1.50674 1.11841 1.18268 0.82617 0.79793 0.84265 1.90797 1.74138 1.54030 1.25816 1.19877 0.94717 0.94043 1.14087 1.17730 0.82766 0.88493 0.99145 1.91551 1.45679 1.84555 1.89965 1.21619 0.90570 1.02428 1.02403 1.21599 0.98007 0.93450 0.91116 1.21623 0.97998 0.94519 1.02761 1.17672 0.93035 0.77607 0.99454 1.91555 1.96587 1.30396 1.92866 1.23245 0.95581 0.98782 1.00547 1.21120 0.93645 0.92270 0.87148 1.44685 1.00356 1.68486 1.20178 1.19349 0.90379 1.34856 0.91615 0.89862 1.25738 0.98559 1.01882 0.99381 1.70145 1.10356 1.54385 1.24870 0.85035 0.78512 0.77125 0.78805 1.18674 1.22238 1.21944 0.91645 0.93970 0.91946 0.94505 0.92708 0.74990 0.80454 0.78492 0.80254 0.91622 0.90789 0.93804 0.98635 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.58 71.98 0.69 -3.27 16 2 C -0.13 -4.80 5.41 30.59 0.17 -4.64 16 3 C 0.16 6.54 2.94 45.34 0.13 6.67 16 4 H 0.05 1.97 7.72 -2.39 -0.02 1.95 16 5 C 0.15 5.85 2.01 46.18 0.09 5.95 16 6 H 0.08 3.34 7.19 -2.39 -0.02 3.33 16 7 N -0.69 -21.54 4.91 -440.08 -2.16 -23.70 16 8 C 0.56 18.73 6.54 86.70 0.57 19.29 16 9 O -0.57 -23.81 16.75 -3.99 -0.07 -23.88 16 10 C -0.22 -5.50 5.64 -20.02 -0.11 -5.61 16 11 C 0.14 2.86 7.29 22.67 0.17 3.03 16 12 F -0.14 -3.59 16.83 44.97 0.76 -2.83 16 13 C -0.15 -1.57 10.01 22.28 0.22 -1.35 16 14 C -0.02 -0.13 10.03 22.30 0.22 0.10 16 15 C -0.15 -1.47 10.01 22.28 0.22 -1.24 16 16 C 0.14 2.81 7.29 22.67 0.17 2.98 16 17 F -0.14 -3.25 16.83 44.97 0.76 -2.49 16 18 C -0.14 -5.91 6.77 31.99 0.22 -5.70 16 19 C 0.18 9.48 5.41 86.86 0.47 9.95 16 20 N -0.61 -31.33 3.13 -668.25 -2.09 -33.42 16 21 C -0.23 -12.84 9.75 84.03 0.82 -12.02 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 23 C -0.06 -3.53 5.47 84.86 0.46 -3.07 16 24 N -0.95 -57.59 10.57 21.65 0.23 -57.37 16 25 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 26 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.32 7.41 -2.39 -0.02 1.30 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.54 8.07 -2.39 -0.02 1.53 16 33 H 0.05 2.20 7.90 -2.39 -0.02 2.18 16 34 H 0.41 10.71 8.35 -92.71 -0.77 9.93 16 35 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.20 -0.77 8.06 -2.91 -0.02 -0.79 16 37 H 0.18 0.66 8.06 -2.91 -0.02 0.63 16 38 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 40 H 0.04 2.50 6.93 -2.38 -0.02 2.48 16 41 H 0.00 -0.25 8.06 -2.38 -0.02 -0.27 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -75.92 358.56 4.23 -71.69 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.28 Total: 13.25 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.51 Total: 11.06 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -4.02 Total: -114.48 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 1.51 Total: -5.32 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.92 4.23 -71.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087808531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.206 kcal (2) G-P(sol) polarization free energy of solvation -75.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds