Wall clock time and date at job start Tue Mar 31 2020 14:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 N 1.46493 * 109.47377 * 180.02562 * 3 2 1 5 5 C 1.46505 * 119.99899 * 90.00269 * 4 3 2 6 6 C 1.52997 * 109.47212 * 270.00188 * 5 4 3 7 7 N 1.46500 * 109.47473 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00376 * 180.02562 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00115 * 180.02562 * 8 7 6 11 11 S 1.80994 * 109.46976 * 180.02562 * 10 8 7 12 12 C 1.76200 * 100.00100 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99679 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00069 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99948 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47370 * 60.00273 * 16 14 12 18 18 H 1.48506 * 109.47364 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47040 * 299.99764 * 16 14 12 20 20 C 1.38411 * 120.00423 * 270.00484 * 4 3 2 21 21 N 1.32489 * 119.21242 * 359.72974 * 20 4 3 22 22 C 1.32280 * 120.73893 * 179.72115 * 21 20 4 23 23 C 1.38609 * 119.19527 * 0.54045 * 22 21 20 24 24 C 1.38609 * 118.55636 * 359.73031 * 23 22 21 25 25 N 1.32275 * 119.19903 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47772 * 59.99447 * 1 2 3 27 27 H 1.09002 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46906 * 299.99555 * 1 2 3 29 29 H 1.09006 * 109.46906 * 240.00445 * 2 1 3 30 30 H 1.08996 * 109.47330 * 120.00837 * 2 1 3 31 31 H 1.09006 * 109.46817 * 60.00390 * 3 2 1 32 32 H 1.08996 * 109.47652 * 300.00640 * 3 2 1 33 33 H 1.09002 * 109.47068 * 30.00248 * 5 4 3 34 34 H 1.09001 * 109.47372 * 150.00336 * 5 4 3 35 35 H 1.09002 * 109.47153 * 300.00008 * 6 5 4 36 36 H 1.08998 * 109.47533 * 59.99637 * 6 5 4 37 37 H 0.97004 * 119.99396 * 0.02562 * 7 6 5 38 38 H 1.09002 * 109.46793 * 299.99519 * 10 8 7 39 39 H 1.08992 * 109.46831 * 59.99969 * 10 8 7 40 40 H 0.96999 * 119.99948 * 180.02562 * 15 14 12 41 41 H 1.07999 * 120.40546 * 180.30151 * 22 21 20 42 42 H 1.08002 * 120.72249 * 179.75306 * 23 22 21 43 43 H 1.08002 * 120.39987 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2369 1.4428 -1.2697 6 6 4.4917 0.0004 -1.7118 7 7 5.2231 0.0006 -2.9812 8 6 5.5593 -1.1665 -3.5655 9 8 5.2558 -2.2169 -3.0406 10 6 6.3121 -1.1662 -4.8710 11 16 6.6121 -2.8725 -5.3947 12 6 7.4813 -2.5823 -6.8997 13 1 7.6713 -1.5709 -7.2271 14 6 7.9209 -3.6536 -7.6649 15 7 7.6880 -4.8864 -7.2666 16 14 8.8417 -3.3459 -9.2608 17 1 10.0794 -2.5756 -8.9776 18 1 9.1988 -4.6453 -9.8848 19 1 7.9786 -2.5722 -10.1890 20 6 4.1976 1.4422 1.1977 21 7 3.5200 1.4474 2.3362 22 6 4.1512 1.4418 3.4987 23 6 5.5372 1.4418 3.5155 24 6 6.2145 1.4420 2.3062 25 7 5.5224 1.4427 1.1790 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.6475 1.9568 -2.0290 34 1 5.1894 1.9565 -1.1397 35 1 5.0811 -0.5136 -0.9525 36 1 3.5393 -0.5135 -1.8418 37 1 5.4655 0.8408 -3.4011 38 1 5.7229 -0.6518 -5.6301 39 1 7.2648 -0.6529 -4.7408 40 1 7.9956 -5.6351 -7.8012 41 1 3.5934 1.4411 4.4235 42 1 6.0776 1.4413 4.4506 43 1 7.2943 1.4415 2.2845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101084881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:48 Heat of formation + Delta-G solvation = 19.047806 kcal Electronic energy + Delta-G solvation = -24151.453589 eV Core-core repulsion = 20551.378930 eV Total energy + Delta-G solvation = -3600.074659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19233 -39.19033 -37.80324 -34.79392 -33.90148 -33.48212 -32.41363 -31.42525 -29.98686 -28.13548 -26.27123 -25.46612 -24.62626 -23.77868 -21.98960 -21.45529 -20.34865 -18.18015 -17.86965 -17.62330 -16.25884 -16.14810 -15.98675 -15.44285 -15.30503 -15.15414 -14.84126 -14.78855 -14.37952 -13.88769 -13.83934 -13.78924 -13.61100 -13.15871 -12.60423 -12.53678 -12.30938 -12.26759 -11.97046 -11.48963 -11.36179 -11.18196 -11.05641 -11.03110 -11.02667 -10.80623 -10.76049 -10.50123 -9.81196 -9.41423 -9.29371 -9.04904 -8.85265 -8.22519 -8.20476 -6.48297 -6.19973 -3.90551 0.94854 0.95606 2.26561 3.10080 3.13446 3.24546 3.28858 3.34111 3.67784 3.77503 3.95167 4.22008 4.27529 4.47010 4.68689 4.69554 4.80579 4.87517 4.98134 4.98889 5.06700 5.14159 5.14964 5.21682 5.26937 5.42785 5.51031 5.55782 5.63473 5.68982 5.82886 5.86792 5.92677 5.98398 6.07172 6.13101 6.16029 6.49075 6.63880 6.67562 7.16324 7.60679 7.72393 8.04195 8.36558 8.64420 9.25048 10.87422 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002261 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.624798 B =12379.619484 C =13188.596945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.132 3.868 4 N -0.579 5.579 5 C 0.122 3.878 6 C 0.107 3.893 7 N -0.736 5.736 8 C 0.533 3.467 9 O -0.517 6.517 10 C -0.152 4.152 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.565 3.435 21 N -0.567 5.567 22 C 0.190 3.810 23 C -0.296 4.296 24 C 0.193 3.807 25 N -0.565 5.565 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.165 0.835 42 H 0.142 0.858 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 18.236 20.210 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.009 3.991 4 N -0.294 5.294 5 C -0.002 4.002 6 C -0.018 4.018 7 N -0.391 5.391 8 C 0.319 3.681 9 O -0.391 6.391 10 C -0.303 4.303 11 S 0.166 5.834 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.210 3.790 21 N -0.289 5.289 22 C 0.022 3.978 23 C -0.321 4.321 24 C 0.025 3.975 25 N -0.287 5.287 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.182 0.818 42 H 0.160 0.840 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.824 16.297 20.002 27.979 hybrid contribution 1.616 1.676 -0.919 2.503 sum -9.208 17.973 19.082 27.784 Atomic orbital electron populations 1.21668 0.95014 1.02097 1.01718 1.22011 0.96230 0.97126 1.02920 1.21590 0.76957 0.97292 1.03232 1.46028 1.05473 1.76652 1.01296 1.21594 0.98319 0.96462 0.83828 1.21688 0.97078 0.96885 0.86175 1.45839 1.60252 1.08961 1.24071 1.20304 0.78731 0.83132 0.85983 1.90708 1.53018 1.31019 1.64381 1.23521 1.02080 1.08450 0.96241 1.85412 1.73542 0.97332 1.27124 1.22828 1.42058 0.95461 1.08025 0.90966 1.24995 0.95826 0.94433 0.98361 1.70012 1.43959 0.98060 1.38299 0.86222 0.79800 0.77659 0.81797 1.19934 1.20828 1.19946 1.19274 0.85338 0.88109 0.86307 1.67907 1.41011 1.22105 0.97920 1.22914 0.91941 0.87758 0.95201 1.22534 0.96751 1.12166 1.00684 1.22966 1.00444 0.87266 0.86791 1.67946 1.06864 1.21700 1.32173 0.92646 0.92398 0.92590 0.91486 0.91600 0.89342 0.90481 0.89845 0.88746 0.91459 0.91593 0.76848 0.89196 0.89161 0.92140 0.81811 0.84016 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.32 6.26 -26.73 -0.17 -1.49 16 3 C 0.13 1.11 5.46 -4.05 -0.02 1.09 16 4 N -0.58 -5.87 2.57 -176.04 -0.45 -6.33 16 5 C 0.12 1.16 5.57 -4.04 -0.02 1.14 16 6 C 0.11 1.37 6.00 -4.04 -0.02 1.35 16 7 N -0.74 -10.08 5.56 -60.29 -0.33 -10.41 16 8 C 0.53 10.21 7.85 -10.98 -0.09 10.12 16 9 O -0.52 -12.19 15.86 5.55 0.09 -12.11 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 12 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 16 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.56 6.49 8.17 -322.81 -2.64 3.85 16 21 N -0.57 -6.00 9.11 -13.93 -0.13 -6.13 16 22 C 0.19 1.50 11.30 -17.22 -0.19 1.31 16 23 C -0.30 -2.11 10.16 -39.31 -0.40 -2.51 16 24 C 0.19 1.69 11.30 -17.22 -0.19 1.50 16 25 N -0.57 -6.49 9.11 -13.93 -0.13 -6.62 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.71 6.26 -51.93 -0.33 0.38 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.76 7.33 -51.93 -0.38 0.38 16 32 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 33 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 34 H 0.09 0.92 7.33 -51.93 -0.38 0.54 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.91 6.26 -51.93 -0.33 0.58 16 37 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -36.82 378.74 -11.06 -47.88 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.35 Total: 1.37 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.96 Total: -0.30 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.31 Total: -55.15 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.82 -11.06 -47.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101084881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.923 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds