Wall clock time and date at job start Tue Mar 31 2020 14:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47251 * 2 1 4 4 H 1.08993 * 109.47086 * 54.99840 * 3 2 1 5 5 C 1.53000 * 109.47080 * 174.99861 * 3 2 1 6 6 N 1.46503 * 109.47418 * 175.00037 * 5 3 2 7 7 C 1.34767 * 120.00432 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00319 * 180.02562 * 7 6 5 10 10 S 1.81002 * 109.47225 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99771 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99960 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99940 * 180.02562 * 11 10 9 14 14 N 1.31627 * 119.99468 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99990 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47110 * 90.00081 * 15 13 11 17 17 H 1.48502 * 109.46974 * 209.99830 * 15 13 11 18 18 H 1.48499 * 109.47374 * 329.99959 * 15 13 11 19 19 N 1.46501 * 109.46967 * 294.99577 * 3 2 1 20 20 C 1.38536 * 119.99607 * 85.00235 * 19 3 2 21 21 C 1.39664 * 120.53605 * 0.02562 * 20 19 3 22 22 C 1.38073 * 118.33366 * 179.97438 * 21 20 19 23 23 N 1.32577 * 119.20012 * 0.02562 * 22 21 20 24 24 C 1.31762 * 121.01539 * 359.97438 * 23 22 21 25 25 C 1.50702 * 119.08352 * 180.02562 * 24 23 22 26 26 N 1.31781 * 121.82913 * 0.02562 * 24 23 22 27 27 H 1.08992 * 109.47313 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47387 * 300.00695 * 1 2 3 29 29 H 1.09010 * 109.46799 * 59.99877 * 1 2 3 30 30 H 1.08998 * 109.47159 * 239.99761 * 2 1 3 31 31 H 1.09000 * 109.47031 * 119.99623 * 2 1 3 32 32 H 1.09006 * 109.47166 * 295.00023 * 5 3 2 33 33 H 1.09003 * 109.47354 * 54.99730 * 5 3 2 34 34 H 0.97002 * 119.99014 * 359.97438 * 6 5 3 35 35 H 1.09007 * 109.46961 * 299.99458 * 9 7 6 36 36 H 1.08995 * 109.47490 * 59.99769 * 9 7 6 37 37 H 0.97008 * 119.99380 * 180.02562 * 14 13 11 38 38 H 0.97001 * 119.99869 * 265.00030 * 19 3 2 39 39 H 1.07999 * 120.83225 * 359.95575 * 21 20 19 40 40 H 1.07998 * 120.40141 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47182 * 269.97787 * 25 24 23 42 42 H 1.09000 * 109.46757 * 29.98258 * 25 24 23 43 43 H 1.09003 * 109.46747 * 149.98147 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0632 2.8168 0.0060 7 6 5.3857 3.0630 0.0869 8 8 6.1633 2.1484 0.2593 9 6 5.8982 4.4748 -0.0357 10 16 7.7021 4.4769 0.1129 11 6 8.0216 6.2008 -0.0628 12 1 7.2029 6.8893 -0.2116 13 6 9.3255 6.6738 -0.0112 14 7 10.3232 5.8345 0.1695 15 14 9.6642 8.5012 -0.1983 16 1 9.6400 9.1485 1.1380 17 1 10.9993 8.6962 -0.8186 18 1 8.6227 9.1118 -1.0630 19 7 1.6525 2.0975 -1.2519 20 6 0.4013 2.6802 -1.3702 21 6 -0.4993 2.6503 -0.3031 22 6 -1.7337 3.2456 -0.4705 23 7 -2.0224 3.8213 -1.6294 24 6 -1.1508 3.8327 -2.6175 25 6 -1.5244 4.4999 -3.9161 26 7 0.0385 3.2770 -2.5017 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8499 1.0377 1.0961 33 1 3.9954 0.8310 -0.6658 34 1 3.4411 3.5482 -0.1315 35 1 5.6136 4.8817 -1.0061 36 1 5.4674 5.0879 0.7559 37 1 11.2345 6.1652 0.2059 38 1 2.2721 2.1231 -1.9978 39 1 -0.2367 2.1733 0.6296 40 1 -2.4558 3.2417 0.3326 41 1 -1.9957 3.7718 -4.5762 42 1 -2.2202 5.3153 -3.7186 43 1 -0.6273 4.8952 -4.3927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102986813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:32 Heat of formation + Delta-G solvation = 11.360176 kcal Electronic energy + Delta-G solvation = -24320.482846 eV Core-core repulsion = 20720.074827 eV Total energy + Delta-G solvation = -3600.408019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35174 -39.51631 -38.11009 -34.64531 -33.96379 -33.13399 -32.45080 -31.52156 -30.01318 -28.69398 -27.75766 -25.51278 -24.04101 -23.66033 -23.16057 -20.98628 -20.33346 -18.51074 -17.85578 -17.74885 -16.44554 -16.23213 -16.00850 -15.77795 -15.52100 -14.99143 -14.82229 -14.51075 -14.44186 -13.95215 -13.90487 -13.49497 -13.35725 -13.06311 -12.99693 -12.68998 -12.60858 -12.54676 -12.10179 -11.84995 -11.60475 -11.51385 -11.34871 -11.08015 -11.04548 -10.77803 -10.70634 -9.99224 -9.84271 -9.50619 -9.42011 -9.10300 -9.03001 -8.44279 -8.27542 -6.53113 -6.24001 -3.94858 0.80330 1.13962 2.53029 2.95402 3.00857 3.21159 3.26085 3.30079 3.60456 3.64319 3.87300 4.09472 4.18217 4.20191 4.41052 4.46181 4.52629 4.82603 4.95535 4.99605 5.11329 5.11883 5.13243 5.18360 5.25828 5.30416 5.33482 5.47623 5.50764 5.54318 5.62088 5.66221 5.70355 5.82776 5.84145 6.05001 6.09896 6.42267 6.47809 6.92573 7.23572 7.56208 7.58250 8.06634 8.33116 8.50417 9.21537 10.83448 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.002538 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.650047 B =11028.110097 C =12534.427092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.141 3.859 4 H 0.092 0.908 5 C 0.114 3.886 6 N -0.740 5.740 7 C 0.533 3.467 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.704 5.704 20 C 0.445 3.555 21 C -0.301 4.301 22 C 0.172 3.828 23 N -0.564 5.564 24 C 0.357 3.643 25 C -0.085 4.085 26 N -0.578 5.578 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.411 0.589 39 H 0.148 0.852 40 H 0.163 0.837 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.976 -8.950 -1.684 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.035 3.965 4 H 0.110 0.890 5 C -0.011 4.011 6 N -0.395 5.395 7 C 0.319 3.681 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.337 5.337 20 C 0.200 3.800 21 C -0.328 4.328 22 C 0.010 3.990 23 N -0.283 5.283 24 C 0.089 3.911 25 C -0.144 4.144 26 N -0.302 5.302 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.165 0.835 40 H 0.180 0.820 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.660 -10.177 -2.014 26.753 hybrid contribution -0.442 2.061 0.225 2.120 sum -25.101 -8.116 -1.789 26.442 Atomic orbital electron populations 1.22124 0.95205 1.01948 1.02016 1.21994 0.96755 0.95337 1.03610 1.21441 0.94518 0.94025 0.86488 0.89015 1.21562 0.90835 0.85057 1.03625 1.45982 1.07948 1.08702 1.76891 1.20323 0.81266 0.91187 0.75281 1.90712 1.55401 1.46145 1.46677 1.23531 1.06906 0.95069 1.04933 1.85377 0.91864 1.11056 1.94962 1.22864 0.95460 0.92374 1.57709 0.90933 1.24994 0.95051 0.99003 0.94528 1.70018 0.99508 1.34558 1.46207 0.86161 0.77847 0.82985 0.78478 1.20252 1.20718 1.19672 1.44640 1.13317 1.58907 1.16860 1.18492 0.86095 0.86410 0.89007 1.22443 0.97421 1.11257 1.01706 1.22846 0.93905 0.88072 0.94162 1.68262 1.35770 1.22702 1.01600 1.22919 0.83867 0.89391 0.94945 1.20562 1.02925 1.00332 0.90575 1.67789 1.20597 1.16944 1.24919 0.92574 0.92130 0.92302 0.90867 0.90043 0.89628 0.90716 0.76648 0.89220 0.89248 0.92160 0.75184 0.83459 0.82013 0.89771 0.89625 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 8.22 37.15 0.31 -0.59 16 2 C -0.14 -0.79 5.61 -26.73 -0.15 -0.94 16 3 C 0.14 0.95 2.37 -67.93 -0.16 0.79 16 4 H 0.09 0.56 6.51 -51.93 -0.34 0.22 16 5 C 0.11 1.08 5.23 -4.04 -0.02 1.06 16 6 N -0.74 -9.00 5.39 -60.29 -0.32 -9.32 16 7 C 0.53 9.50 7.85 -10.99 -0.09 9.42 16 8 O -0.52 -11.20 15.86 5.55 0.09 -11.12 16 9 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 15 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 N -0.70 -5.69 4.61 -53.78 -0.25 -5.94 16 20 C 0.44 4.26 6.53 -154.79 -1.01 3.25 16 21 C -0.30 -2.39 6.80 -39.11 -0.27 -2.66 16 22 C 0.17 1.44 11.29 -17.29 -0.20 1.25 16 23 N -0.56 -5.95 10.33 -10.81 -0.11 -6.06 16 24 C 0.36 3.81 7.64 -157.23 -1.20 2.61 16 25 C -0.09 -0.65 10.32 36.01 0.37 -0.28 16 26 N -0.58 -6.50 10.37 -9.96 -0.10 -6.60 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 6.34 -51.93 -0.33 -0.04 16 29 H 0.06 0.45 5.39 -51.92 -0.28 0.17 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.40 4.19 8.14 -40.82 -0.33 3.86 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.41 3.61 8.73 -40.82 -0.36 3.25 16 39 H 0.15 0.87 4.13 -52.49 -0.22 0.65 16 40 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -35.37 369.06 -9.68 -45.05 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.05 Total: 3.12 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.00 Total: -1.90 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.05 Total: -53.30 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.37 -9.68 -45.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102986813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.408 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds