Wall clock time and date at job start Tue Mar 31 2020 14:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46950 * 2 1 4 4 C 1.52996 * 109.46951 * 119.99586 * 2 1 3 5 5 H 1.09000 * 109.47145 * 60.00120 * 4 2 1 6 6 C 1.53006 * 109.47102 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46883 * 175.00371 * 6 4 2 8 8 C 1.34775 * 119.99531 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00300 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99773 * 179.97438 * 8 7 6 11 11 S 1.80999 * 109.47016 * 180.02562 * 10 8 7 12 12 C 1.76204 * 100.00065 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99828 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99910 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00067 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99868 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46942 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46977 * 120.00263 * 16 14 12 19 19 H 1.48496 * 109.47125 * 240.00477 * 16 14 12 20 20 N 1.46498 * 109.47308 * 299.99975 * 4 2 1 21 21 C 1.38416 * 119.99790 * 85.00213 * 20 4 2 22 22 N 1.32489 * 119.21483 * 359.72847 * 21 20 4 23 23 C 1.32284 * 120.73723 * 179.71859 * 22 21 20 24 24 C 1.38603 * 119.19639 * 0.54677 * 23 22 21 25 25 C 1.38611 * 118.55771 * 359.72816 * 24 23 22 26 26 N 1.32274 * 119.19726 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47312 * 300.00537 * 1 2 3 28 28 H 1.09007 * 109.46984 * 60.00178 * 1 2 3 29 29 H 1.08993 * 109.47243 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47293 * 240.00017 * 2 1 3 31 31 H 1.09002 * 109.47044 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47376 * 299.99272 * 3 2 1 33 33 H 1.08996 * 109.47552 * 59.99609 * 3 2 1 34 34 H 1.09001 * 109.47002 * 294.99868 * 6 4 2 35 35 H 1.08993 * 109.46955 * 55.00306 * 6 4 2 36 36 H 0.96992 * 119.99966 * 359.97438 * 7 6 4 37 37 H 1.08998 * 109.47224 * 299.99707 * 10 8 7 38 38 H 1.08993 * 109.47046 * 60.00641 * 10 8 7 39 39 H 0.97001 * 119.99673 * 179.97438 * 15 14 12 40 40 H 0.96995 * 120.00562 * 265.00143 * 20 4 2 41 41 H 1.07998 * 120.39875 * 180.29948 * 23 22 21 42 42 H 1.07996 * 120.72213 * 179.70922 * 24 23 22 43 43 H 1.07995 * 120.39475 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6766 -1.7488 1.2493 6 6 3.5700 -0.7206 1.2496 7 7 4.0582 -1.3044 2.5015 8 6 5.3832 -1.4085 2.7247 9 8 6.1714 -1.0185 1.8895 10 6 5.8855 -2.0084 4.0127 11 16 7.6955 -2.0079 4.0131 12 6 8.0014 -2.7414 5.5857 13 1 7.1740 -3.0347 6.2148 14 6 9.3056 -2.9422 6.0159 15 7 10.3140 -2.5842 5.2493 16 14 9.6300 -3.7192 7.6834 17 1 8.3370 -4.0279 8.3455 18 1 10.4050 -4.9729 7.5030 19 1 10.4055 -2.7748 8.5271 20 7 1.5516 -0.0305 2.4454 21 6 0.2966 -0.3240 2.9501 22 7 -0.4521 -1.2283 2.3361 23 6 -1.6537 -1.5361 2.7957 24 6 -2.1306 -0.8918 3.9263 25 6 -1.3235 0.0529 4.5407 26 7 -0.1297 0.3102 4.0325 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.9337 -1.3099 0.4079 35 1 3.9329 0.3032 1.1603 36 1 3.4278 -1.6159 3.1696 37 1 5.5222 -1.4185 4.8543 38 1 5.5221 -3.0321 4.1027 39 1 11.2255 -2.7242 5.5501 40 1 2.1076 0.6325 2.8837 41 1 -2.2574 -2.2776 2.2936 42 1 -3.1099 -1.1205 4.3200 43 1 -1.6653 0.5725 5.4235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105133857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:53 Heat of formation + Delta-G solvation = 20.035213 kcal Electronic energy + Delta-G solvation = -24674.298446 eV Core-core repulsion = 21074.266605 eV Total energy + Delta-G solvation = -3600.031842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29324 -39.47895 -38.10930 -34.21069 -34.14795 -33.74746 -32.42686 -30.97231 -29.76067 -27.78827 -27.30934 -25.48656 -24.80457 -23.66360 -23.02582 -20.53938 -19.84994 -18.58894 -17.91636 -17.44322 -16.49873 -16.23445 -16.04023 -15.80215 -15.37352 -14.85138 -14.80230 -14.66572 -14.42815 -14.16360 -13.83972 -13.65514 -13.37424 -12.91181 -12.81622 -12.54829 -12.33979 -11.96762 -11.84503 -11.72867 -11.25925 -11.10644 -11.06816 -11.01716 -10.93058 -10.81452 -10.74796 -10.58644 -9.80457 -9.42580 -9.31849 -9.07738 -8.91680 -8.34677 -8.23320 -6.49738 -6.21690 -3.92032 0.92925 0.95442 2.56377 3.02341 3.08537 3.21823 3.28314 3.33103 3.66056 3.71641 3.93385 4.20527 4.35744 4.39369 4.53271 4.62109 4.74166 4.91973 4.97849 4.99145 5.13536 5.13963 5.20302 5.37314 5.44660 5.49305 5.54351 5.60771 5.68281 5.74889 5.81317 5.86242 5.89414 5.97158 6.10385 6.14478 6.17290 6.53164 6.58852 6.82739 7.19841 7.60197 7.66766 8.08369 8.35763 8.58717 9.23918 10.85817 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.002620 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.167491 B =10683.055596 C =12035.003103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.153 4.153 4 C 0.156 3.844 5 H 0.099 0.901 6 C 0.109 3.891 7 N -0.738 5.738 8 C 0.533 3.467 9 O -0.516 6.516 10 C -0.153 4.153 11 S -0.060 6.060 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.689 5.689 21 C 0.568 3.432 22 N -0.559 5.559 23 C 0.188 3.812 24 C -0.297 4.297 25 C 0.191 3.809 26 N -0.572 5.572 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.415 0.585 41 H 0.164 0.836 42 H 0.140 0.860 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.779 4.559 -7.059 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 C -0.210 4.210 4 C 0.050 3.950 5 H 0.117 0.883 6 C -0.016 4.016 7 N -0.393 5.393 8 C 0.319 3.681 9 O -0.391 6.391 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.326 5.326 21 C 0.211 3.789 22 N -0.282 5.282 23 C 0.020 3.980 24 C -0.323 4.323 25 C 0.024 3.976 26 N -0.294 5.294 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.181 0.819 42 H 0.158 0.842 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -25.247 5.350 -9.031 27.343 hybrid contribution -1.750 -1.001 2.939 3.564 sum -26.997 4.349 -6.093 28.016 Atomic orbital electron populations 1.21828 0.94267 1.02472 1.00329 1.21478 0.96877 0.96737 0.97268 1.21921 1.01402 0.95794 1.01866 1.21309 0.92258 0.97476 0.83981 0.88276 1.21703 0.91524 1.00146 0.88178 1.45984 1.07394 1.65550 1.20416 1.20304 0.81402 0.77990 0.88439 1.90705 1.54856 1.47192 1.46306 1.23527 1.06897 1.03143 0.96831 1.85377 0.91379 1.81187 1.25357 1.22909 0.95054 1.46773 1.03553 0.90908 1.24994 0.95047 0.95347 0.98224 1.70028 0.99002 1.44709 1.36560 0.86114 0.78404 0.78819 0.82144 1.19625 1.20560 1.20552 1.44256 1.13329 1.45006 1.29999 1.19284 0.87279 0.86564 0.85751 1.68111 1.07672 1.18748 1.33660 1.22921 0.90195 0.93860 0.91071 1.22501 1.03981 1.04149 1.01648 1.22899 0.87274 0.91283 0.96177 1.67925 1.17816 1.30081 1.13554 0.93512 0.93751 0.91340 0.89921 0.91964 0.92649 0.92680 0.89858 0.90540 0.76739 0.89277 0.89303 0.92238 0.74659 0.81884 0.84167 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 7.65 37.16 0.28 -0.80 16 2 C -0.10 -0.82 2.80 -90.62 -0.25 -1.07 16 3 C -0.15 -1.24 8.69 37.16 0.32 -0.91 16 4 C 0.16 1.36 2.16 -67.93 -0.15 1.22 16 5 H 0.10 0.93 7.51 -51.93 -0.39 0.54 16 6 C 0.11 1.19 5.02 -4.04 -0.02 1.17 16 7 N -0.74 -9.74 5.39 -60.29 -0.32 -10.06 16 8 C 0.53 9.87 7.85 -10.98 -0.09 9.78 16 9 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 12 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 13 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 16 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 N -0.69 -6.40 3.77 -55.79 -0.21 -6.61 16 21 C 0.57 5.78 6.79 -322.80 -2.19 3.59 16 22 N -0.56 -5.15 6.34 -13.93 -0.09 -5.24 16 23 C 0.19 1.32 11.30 -17.22 -0.19 1.13 16 24 C -0.30 -1.87 10.16 -39.31 -0.40 -2.27 16 25 C 0.19 1.49 11.30 -17.22 -0.19 1.29 16 26 N -0.57 -5.98 10.46 -13.93 -0.15 -6.12 16 27 H 0.05 0.46 5.74 -51.93 -0.30 0.16 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.58 7.29 -51.93 -0.38 0.20 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.52 6.32 -51.93 -0.33 0.20 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.48 7.60 -51.93 -0.39 0.09 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.87 6.17 -51.93 -0.32 0.55 16 36 H 0.40 4.62 8.14 -40.82 -0.33 4.28 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.42 3.99 8.72 -40.82 -0.36 3.63 16 41 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -35.02 367.98 -10.25 -45.27 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.15 Total: 4.40 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.46 Total: -2.85 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.04 Total: -53.60 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.02 -10.25 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105133857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.302 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds